Clone BS14818 Report

Search the DGRC for BS14818

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:148
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG5554-RA
Protein status:BS14818.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14818.3prime Sequence

811 bp (759 high quality bases) assembled on 2006-10-13

> BS14818.3prime
ATGGTCTAGAAAGCTTCTAATCGCCTTTGCGAGGCTTGCGCTTGCGCACC
TGTTCCGTCTTCTCGGGCGCAGCATCGCCGGCCTGCTTGGGCTCCGGCTT
CTCTTCCTTTTCCGGCTCGCTGTCGGCCTCCTTCTCTTTAGTGGCCAGAT
CGCCCACCTGCTCCTCGCTGTCCTCTTCCTCTTCGTCGTCGTCCTCCTGT
TCTTCCTCGTCGCTATCGCGTTGCTCGTCATCGTTCTCCTCGGCGTCGCC
ATCATCCTCGATCTCCTCGGTTGCCAAATCCTCCAGGCCCTCGGTCAGAT
TGTCCTGGGACTCGGAGAAGCTCTGGCGCTGCGACTTCTTGGGTGGGTAG
ACAAAGTCCACAAGGCACACGAGCAGCAGCCCCAGGGCAGCGCCCACGAA
GATGGTGGCGATGGCGAAGAGGGCGTAGGAGCCCCACGTGGGCAGTCCGT
ATTCCTCCTGCAGGCGCCCGTTGAAGTCCTTCAGAGTGTGCGAAAGCTTG
AAGAAGTAGGACAGCACGGACATGTGGGTGGTGTCGGGCTTCTTCCAGGC
GGACAGCGGTTCGATGCTCTGCCACTGCTGCTTCTTCACGAAGTAGAGGA
GGGCGTCGCCATCACGGGCCCCACGATACTGCCGGAACTCGCCATCTTTT
ACGTGGTAGATGGTGGGGAGGGCGGTGACAAAGAAGCGTCCACTCAGCGA
GGGCGAGGTTGTCACGTCGATTTTGGCCACCTGCACCTGGACATCCTTGG
CCACGCGGGCAAACCGCTCCCAGGTGGGAGCCAGGTTCTTGCAGGCCGGG
CACCATGGAAC

BS14818.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5554-PA 972 CG5554-RA 180..972 809..17 3965 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:21:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5554-RA 1565 CG5554-RA 338..1130 809..17 3965 100 Minus
CG5554-RB 1586 CG5554-RB 338..1151 809..17 3745 97.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23846125..23846589 481..17 2325 100 Minus
2R 25286936 2R 23845766..23845941 653..478 880 100 Minus
2R 25286936 2R 23845541..23845696 809..654 780 100 Minus
Blast to na_te.dros performed 2015-02-12 11:21:25
Subject Length Description Subject Range Query Range Score Percent Strand
aurora-element 4263 aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). 2298..2405 265..159 114 60 Minus

BS14818.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:46 Download gff for BS14818.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5554-PA 178..972 17..811 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:00 Download gff for BS14818.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5554-RA 336..1134 13..811 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:41:50 Download gff for BS14818.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5554-RA 336..1134 13..811 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:41:50 Download gff for BS14818.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23845766..23845940 479..653 100 -> Minus
2R 23845539..23845696 654..811 99 -> Minus
2R 23846128..23846593 13..478 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:00 Download gff for BS14818.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19733289..19733463 479..653 100 -> Minus
arm_2R 19733062..19733219 654..811 99 -> Minus
arm_2R 19733651..19734116 13..478 99   Minus

BS14818.5prime Sequence

795 bp (712 high quality bases) assembled on 2006-10-13

> BS14818.5prime
GAAGTTATCAGTCGACATGCATAGCACATCGTACTTTGTGGCCGCGACAT
GCGCGGCGCTGCTTCTGCTGGCGGCGACGGCGCAGTCGACGGCAGCAGCG
CAGTCAGGACTGCAGCCAGGTGGCAAGTTAATCGAGTTGGACGAGGACAA
CTGGCACCTGATGCTCCAGGGCGAATGGATGATCGAGTTCTTTGCTCCAT
GGTGCCCGGCCTGCAAGAACCTGGCTCCCACCTGGGAGCGGTTTGCCCGC
GTGGCCAAGGATGTCCAGGTGCAGGTGGCCAAAATCGACGTGACAACCTC
GCCCTCGCTGAGTGGACGCTTCTTTGTCACCGCCCTCCCCACCATCTACC
ACGTAAAAGATGGCGAGTTCCGGCAGTATCGTGGGGCCCGTGATGGCGAC
GCCCTCCTCTACTTCGTGAAGAAGCAGCAGTGGCAGAGCATCGAACCGCT
GTCCGCCTGGAAGAAGCCCGACACCACCCACATGTCCGTGCTGTCCTACT
TCTTCAAGCTTTCGCACACTCTGAAGGACTTCAACGGGCGCCTGCAGGAG
GAATACGGACTGCCCACGTGGGGCTCCTACGCCCTCTTCGCCATCGCCAC
CATCTTCGTGGGCGCTGCCCTGGGGCTGCTGCTCGTGTGCCTTGTGGACT
TTGTCTACCCACCCAAGAAGTCGCAGCGCCAGAGCTTCTCCGAGTCCCAG
GACAATCTGACCGAGGGCCTGGAGGATTTGGCAACCGAGGAGATCGAGGA
TGATGGCGACGCCGAGGAGAACGATGACGAGCAACGCGATAGCGA

BS14818.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG5554-PA 972 CG5554-RA 1..779 17..795 3895 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5554-RA 1565 CG5554-RA 157..937 15..795 3905 100 Plus
CG5554-RB 1586 CG5554-RB 157..958 15..795 3685 97.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23846125..23846396 524..795 1360 100 Plus
2R 25286936 2R 23845766..23845941 352..527 880 100 Plus
2R 25286936 2R 23845157..23845331 15..189 875 100 Plus
2R 25286936 2R 23845535..23845696 190..351 810 100 Plus
Blast to na_te.dros performed 2015-02-10 21:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
blood 7410 blood BLOOD 7410bp 198..239 47..88 120 76.2 Plus
blood 7410 blood BLOOD 7410bp 7209..7250 47..88 120 76.2 Plus
aurora-element 4263 aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). 2298..2340 740..782 107 72.1 Plus

BS14818.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:46 Download gff for BS14818.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5554-PA 1..778 17..794 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:28:54 Download gff for BS14818.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5554-RA 151..936 7..794 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:47 Download gff for BS14818.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5554-RA 151..936 7..794 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:47 Download gff for BS14818.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23845151..23845331 7..189 98 -> Plus
2R 23845535..23845696 190..351 100 -> Plus
2R 23845766..23845940 352..526 100 -> Plus
2R 23846128..23846395 527..794 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:28:54 Download gff for BS14818.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19732674..19732854 7..189 98 -> Plus
arm_2R 19733058..19733219 190..351 100 -> Plus
arm_2R 19733289..19733463 352..526 100 -> Plus
arm_2R 19733651..19733918 527..794 100   Plus

BS14818.complete Sequence

1004 bp assembled on 2006-11-01

GenBank Submission: FJ637793

> BS14818.complete
GAAGTTATCAGTCGACATGCATAGCACATCGTACTTTGTGGCCGCGACAT
GCGCGGCGCTGCTTCTGCTGGCGGCGACGGCGCAGTCGACGGCAGCAGCG
CAGTCAGGACTGCAGCCAGGTGGCAAGTTAATCGAGTTGGACGAGGACAA
CTGGCACCTGATGCTCCAGGGCGAATGGATGATCGAGTTCTTTGCTCCAT
GGTGCCCGGCCTGCAAGAACCTGGCTCCCACCTGGGAGCGGTTTGCCCGC
GTGGCCAAGGATGTCCAGGTGCAGGTGGCCAAAATCGACGTGACAACCTC
GCCCTCGCTGAGTGGACGCTTCTTTGTCACCGCCCTCCCCACCATCTACC
ACGTAAAAGATGGCGAGTTCCGGCAGTATCGTGGGGCCCGTGATGGCGAC
GCCCTCCTCTACTTCGTGAAGAAGCAGCAGTGGCAGAGCATCGAACCGCT
GTCCGCCTGGAAGAAGCCCGACACCACCCACATGTCCGTGCTGTCCTACT
TCTTCAAGCTTTCGCACACTCTGAAGGACTTCAACGGGCGCCTGCAGGAG
GAATACGGACTGCCCACGTGGGGCTCCTACGCCCTCTTCGCCATCGCCAC
CATCTTCGTGGGCGCTGCCCTGGGGCTGCTGCTCGTGTGCCTTGTGGACT
TTGTCTACCCACCCAAGAAGTCGCAGCGCCAGAGCTTCTCCGAGTCCCAG
GACAATCTGACCGAGGGCCTGGAGGATTTGGCAACCGAGGAGATCGAGGA
TGATGGCGACGCCGAGGAGAACGATGACGAGCAACGCGATAGCGACGAGG
AAGAACAGGAGGACGACGACGAAGAGGAAGAGGACAGCGAGGAGCAGGTG
GGCGATCTGGCCACTAAAGAGAAGGAGGCCGACAGCGAGCCGGAAAAGGA
AGAGAAGCCGGAGCCCAAGCAGGCCGGCGATGCTGCGCCCGAGAAGACGG
AACAGGTGCGCAAGCGCAAGCCTCGCAAAGGCGATTAGAAGCTTTCTAGA
CCAT

BS14818.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5554-RA 972 CG5554-PA 1..972 17..988 4860 100 Plus
CG5554-RB 993 CG5554-PB 1..993 17..988 4615 97.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5554-RA 1565 CG5554-RA 157..1130 15..988 4870 100 Plus
CG5554-RB 1586 CG5554-RB 157..1151 15..988 4625 97.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23846125..23846589 524..988 2325 100 Plus
2R 25286936 2R 23845766..23845941 352..527 880 100 Plus
2R 25286936 2R 23845157..23845331 15..189 875 100 Plus
2R 25286936 2R 23845535..23845696 190..351 810 100 Plus
Blast to na_te.dros performed 2014-11-27 15:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
blood 7410 blood BLOOD 7410bp 198..239 47..88 120 76.2 Plus
blood 7410 blood BLOOD 7410bp 7209..7250 47..88 120 76.2 Plus
aurora-element 4263 aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). 2298..2405 740..846 114 60 Plus

BS14818.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:10 Download gff for BS14818.complete
Subject Subject Range Query Range Percent Splice Strand
CG5554-RA 1..972 17..988 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:02 Download gff for BS14818.complete
Subject Subject Range Query Range Percent Splice Strand
CG5554-RA 260..1243 7..992 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:12 Download gff for BS14818.complete
Subject Subject Range Query Range Percent Splice Strand
CG5554-RA 159..1130 17..988 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:10 Download gff for BS14818.complete
Subject Subject Range Query Range Percent Splice Strand
CG5554-RA 260..1243 7..992 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:20 Download gff for BS14818.complete
Subject Subject Range Query Range Percent Splice Strand
CG5554-RA 159..1130 17..988 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:20 Download gff for BS14818.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23845159..23845331 17..189 100 -> Plus
2R 23845535..23845696 190..351 100 -> Plus
2R 23845766..23845940 352..526 100 -> Plus
2R 23846128..23846589 527..988 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:12 Download gff for BS14818.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19733289..19733463 352..526 100 -> Plus
arm_2R 19732682..19732854 17..189 100 -> Plus
arm_2R 19733058..19733219 190..351 100 -> Plus
arm_2R 19733651..19734112 527..988 100   Plus

BS14818.pep Sequence

Translation from 16 to 987

> BS14818.pep
MHSTSYFVAATCAALLLLAATAQSTAAAQSGLQPGGKLIELDEDNWHLML
QGEWMIEFFAPWCPACKNLAPTWERFARVAKDVQVQVAKIDVTTSPSLSG
RFFVTALPTIYHVKDGEFRQYRGARDGDALLYFVKKQQWQSIEPLSAWKK
PDTTHMSVLSYFFKLSHTLKDFNGRLQEEYGLPTWGSYALFAIATIFVGA
ALGLLLVCLVDFVYPPKKSQRQSFSESQDNLTEGLEDLATEEIEDDGDAE
ENDDEQRDSDEEEQEDDDEEEEDSEEQVGDLATKEKEADSEPEKEEKPEP
KQAGDAAPEKTEQVRKRKPRKGD*

BS14818.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5554-PA 323 CG5554-PA 1..323 1..323 1695 100 Plus
CG5554-PB 330 CG5554-PB 1..330 1..323 1677 97.9 Plus
prtp-PD 353 CG1837-PD 103..206 36..136 185 39.4 Plus
prtp-PC 416 CG1837-PC 166..269 36..136 185 39.4 Plus
prtp-PB 416 CG1837-PB 166..269 36..136 185 39.4 Plus
prtp-PC 416 CG1837-PC 1..208 1..189 166 27.4 Plus