Clone Sequence Records
BS14818.3prime Sequence
811 bp (759 high quality bases) assembled on 2006-10-13
> BS14818.3prime
ATGGTCTAGAAAGCTTCTAATCGCCTTTGCGAGGCTTGCGCTTGCGCACC
TGTTCCGTCTTCTCGGGCGCAGCATCGCCGGCCTGCTTGGGCTCCGGCTT
CTCTTCCTTTTCCGGCTCGCTGTCGGCCTCCTTCTCTTTAGTGGCCAGAT
CGCCCACCTGCTCCTCGCTGTCCTCTTCCTCTTCGTCGTCGTCCTCCTGT
TCTTCCTCGTCGCTATCGCGTTGCTCGTCATCGTTCTCCTCGGCGTCGCC
ATCATCCTCGATCTCCTCGGTTGCCAAATCCTCCAGGCCCTCGGTCAGAT
TGTCCTGGGACTCGGAGAAGCTCTGGCGCTGCGACTTCTTGGGTGGGTAG
ACAAAGTCCACAAGGCACACGAGCAGCAGCCCCAGGGCAGCGCCCACGAA
GATGGTGGCGATGGCGAAGAGGGCGTAGGAGCCCCACGTGGGCAGTCCGT
ATTCCTCCTGCAGGCGCCCGTTGAAGTCCTTCAGAGTGTGCGAAAGCTTG
AAGAAGTAGGACAGCACGGACATGTGGGTGGTGTCGGGCTTCTTCCAGGC
GGACAGCGGTTCGATGCTCTGCCACTGCTGCTTCTTCACGAAGTAGAGGA
GGGCGTCGCCATCACGGGCCCCACGATACTGCCGGAACTCGCCATCTTTT
ACGTGGTAGATGGTGGGGAGGGCGGTGACAAAGAAGCGTCCACTCAGCGA
GGGCGAGGTTGTCACGTCGATTTTGGCCACCTGCACCTGGACATCCTTGG
CCACGCGGGCAAACCGCTCCCAGGTGGGAGCCAGGTTCTTGCAGGCCGGG
CACCATGGAAC
BS14818.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5554-PA | 972 | CG5554-RA | 180..972 | 809..17 | 3965 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:21:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5554-RA | 1565 | CG5554-RA | 338..1130 | 809..17 | 3965 | 100 | Minus |
CG5554-RB | 1586 | CG5554-RB | 338..1151 | 809..17 | 3745 | 97.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:21:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23846125..23846589 | 481..17 | 2325 | 100 | Minus |
2R | 25286936 | 2R | 23845766..23845941 | 653..478 | 880 | 100 | Minus |
2R | 25286936 | 2R | 23845541..23845696 | 809..654 | 780 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 11:21:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 2298..2405 | 265..159 | 114 | 60 | Minus |
BS14818.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:46 Download gff for
BS14818.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5554-PA | 178..972 | 17..811 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:00 Download gff for
BS14818.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5554-RA | 336..1134 | 13..811 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:41:50 Download gff for
BS14818.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5554-RA | 336..1134 | 13..811 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:41:50 Download gff for
BS14818.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23845766..23845940 | 479..653 | 100 | -> | Minus |
2R | 23845539..23845696 | 654..811 | 99 | -> | Minus |
2R | 23846128..23846593 | 13..478 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:00 Download gff for
BS14818.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19733289..19733463 | 479..653 | 100 | -> | Minus |
arm_2R | 19733062..19733219 | 654..811 | 99 | -> | Minus |
arm_2R | 19733651..19734116 | 13..478 | 99 | | Minus |
BS14818.5prime Sequence
795 bp (712 high quality bases) assembled on 2006-10-13
> BS14818.5prime
GAAGTTATCAGTCGACATGCATAGCACATCGTACTTTGTGGCCGCGACAT
GCGCGGCGCTGCTTCTGCTGGCGGCGACGGCGCAGTCGACGGCAGCAGCG
CAGTCAGGACTGCAGCCAGGTGGCAAGTTAATCGAGTTGGACGAGGACAA
CTGGCACCTGATGCTCCAGGGCGAATGGATGATCGAGTTCTTTGCTCCAT
GGTGCCCGGCCTGCAAGAACCTGGCTCCCACCTGGGAGCGGTTTGCCCGC
GTGGCCAAGGATGTCCAGGTGCAGGTGGCCAAAATCGACGTGACAACCTC
GCCCTCGCTGAGTGGACGCTTCTTTGTCACCGCCCTCCCCACCATCTACC
ACGTAAAAGATGGCGAGTTCCGGCAGTATCGTGGGGCCCGTGATGGCGAC
GCCCTCCTCTACTTCGTGAAGAAGCAGCAGTGGCAGAGCATCGAACCGCT
GTCCGCCTGGAAGAAGCCCGACACCACCCACATGTCCGTGCTGTCCTACT
TCTTCAAGCTTTCGCACACTCTGAAGGACTTCAACGGGCGCCTGCAGGAG
GAATACGGACTGCCCACGTGGGGCTCCTACGCCCTCTTCGCCATCGCCAC
CATCTTCGTGGGCGCTGCCCTGGGGCTGCTGCTCGTGTGCCTTGTGGACT
TTGTCTACCCACCCAAGAAGTCGCAGCGCCAGAGCTTCTCCGAGTCCCAG
GACAATCTGACCGAGGGCCTGGAGGATTTGGCAACCGAGGAGATCGAGGA
TGATGGCGACGCCGAGGAGAACGATGACGAGCAACGCGATAGCGA
BS14818.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5554-PA | 972 | CG5554-RA | 1..779 | 17..795 | 3895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:23:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5554-RA | 1565 | CG5554-RA | 157..937 | 15..795 | 3905 | 100 | Plus |
CG5554-RB | 1586 | CG5554-RB | 157..958 | 15..795 | 3685 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23846125..23846396 | 524..795 | 1360 | 100 | Plus |
2R | 25286936 | 2R | 23845766..23845941 | 352..527 | 880 | 100 | Plus |
2R | 25286936 | 2R | 23845157..23845331 | 15..189 | 875 | 100 | Plus |
2R | 25286936 | 2R | 23845535..23845696 | 190..351 | 810 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 21:23:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blood | 7410 | blood BLOOD 7410bp | 198..239 | 47..88 | 120 | 76.2 | Plus |
blood | 7410 | blood BLOOD 7410bp | 7209..7250 | 47..88 | 120 | 76.2 | Plus |
aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 2298..2340 | 740..782 | 107 | 72.1 | Plus |
BS14818.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:46 Download gff for
BS14818.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5554-PA | 1..778 | 17..794 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:28:54 Download gff for
BS14818.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5554-RA | 151..936 | 7..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:47 Download gff for
BS14818.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5554-RA | 151..936 | 7..794 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:47 Download gff for
BS14818.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23845151..23845331 | 7..189 | 98 | -> | Plus |
2R | 23845535..23845696 | 190..351 | 100 | -> | Plus |
2R | 23845766..23845940 | 352..526 | 100 | -> | Plus |
2R | 23846128..23846395 | 527..794 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:28:54 Download gff for
BS14818.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19732674..19732854 | 7..189 | 98 | -> | Plus |
arm_2R | 19733058..19733219 | 190..351 | 100 | -> | Plus |
arm_2R | 19733289..19733463 | 352..526 | 100 | -> | Plus |
arm_2R | 19733651..19733918 | 527..794 | 100 | | Plus |
BS14818.complete Sequence
1004 bp assembled on 2006-11-01
GenBank Submission: FJ637793
> BS14818.complete
GAAGTTATCAGTCGACATGCATAGCACATCGTACTTTGTGGCCGCGACAT
GCGCGGCGCTGCTTCTGCTGGCGGCGACGGCGCAGTCGACGGCAGCAGCG
CAGTCAGGACTGCAGCCAGGTGGCAAGTTAATCGAGTTGGACGAGGACAA
CTGGCACCTGATGCTCCAGGGCGAATGGATGATCGAGTTCTTTGCTCCAT
GGTGCCCGGCCTGCAAGAACCTGGCTCCCACCTGGGAGCGGTTTGCCCGC
GTGGCCAAGGATGTCCAGGTGCAGGTGGCCAAAATCGACGTGACAACCTC
GCCCTCGCTGAGTGGACGCTTCTTTGTCACCGCCCTCCCCACCATCTACC
ACGTAAAAGATGGCGAGTTCCGGCAGTATCGTGGGGCCCGTGATGGCGAC
GCCCTCCTCTACTTCGTGAAGAAGCAGCAGTGGCAGAGCATCGAACCGCT
GTCCGCCTGGAAGAAGCCCGACACCACCCACATGTCCGTGCTGTCCTACT
TCTTCAAGCTTTCGCACACTCTGAAGGACTTCAACGGGCGCCTGCAGGAG
GAATACGGACTGCCCACGTGGGGCTCCTACGCCCTCTTCGCCATCGCCAC
CATCTTCGTGGGCGCTGCCCTGGGGCTGCTGCTCGTGTGCCTTGTGGACT
TTGTCTACCCACCCAAGAAGTCGCAGCGCCAGAGCTTCTCCGAGTCCCAG
GACAATCTGACCGAGGGCCTGGAGGATTTGGCAACCGAGGAGATCGAGGA
TGATGGCGACGCCGAGGAGAACGATGACGAGCAACGCGATAGCGACGAGG
AAGAACAGGAGGACGACGACGAAGAGGAAGAGGACAGCGAGGAGCAGGTG
GGCGATCTGGCCACTAAAGAGAAGGAGGCCGACAGCGAGCCGGAAAAGGA
AGAGAAGCCGGAGCCCAAGCAGGCCGGCGATGCTGCGCCCGAGAAGACGG
AACAGGTGCGCAAGCGCAAGCCTCGCAAAGGCGATTAGAAGCTTTCTAGA
CCAT
BS14818.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:34:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5554-RA | 972 | CG5554-PA | 1..972 | 17..988 | 4860 | 100 | Plus |
CG5554-RB | 993 | CG5554-PB | 1..993 | 17..988 | 4615 | 97.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:34:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5554-RA | 1565 | CG5554-RA | 157..1130 | 15..988 | 4870 | 100 | Plus |
CG5554-RB | 1586 | CG5554-RB | 157..1151 | 15..988 | 4625 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:34:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23846125..23846589 | 524..988 | 2325 | 100 | Plus |
2R | 25286936 | 2R | 23845766..23845941 | 352..527 | 880 | 100 | Plus |
2R | 25286936 | 2R | 23845157..23845331 | 15..189 | 875 | 100 | Plus |
2R | 25286936 | 2R | 23845535..23845696 | 190..351 | 810 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 15:34:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blood | 7410 | blood BLOOD 7410bp | 198..239 | 47..88 | 120 | 76.2 | Plus |
blood | 7410 | blood BLOOD 7410bp | 7209..7250 | 47..88 | 120 | 76.2 | Plus |
aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 2298..2405 | 740..846 | 114 | 60 | Plus |
BS14818.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:35:10 Download gff for
BS14818.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5554-RA | 1..972 | 17..988 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:08:02 Download gff for
BS14818.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5554-RA | 260..1243 | 7..992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:12 Download gff for
BS14818.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5554-RA | 159..1130 | 17..988 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:35:10 Download gff for
BS14818.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5554-RA | 260..1243 | 7..992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:20 Download gff for
BS14818.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5554-RA | 159..1130 | 17..988 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:20 Download gff for
BS14818.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23845159..23845331 | 17..189 | 100 | -> | Plus |
2R | 23845535..23845696 | 190..351 | 100 | -> | Plus |
2R | 23845766..23845940 | 352..526 | 100 | -> | Plus |
2R | 23846128..23846589 | 527..988 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:12 Download gff for
BS14818.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19733289..19733463 | 352..526 | 100 | -> | Plus |
arm_2R | 19732682..19732854 | 17..189 | 100 | -> | Plus |
arm_2R | 19733058..19733219 | 190..351 | 100 | -> | Plus |
arm_2R | 19733651..19734112 | 527..988 | 100 | | Plus |
BS14818.pep Sequence
Translation from 16 to 987
> BS14818.pep
MHSTSYFVAATCAALLLLAATAQSTAAAQSGLQPGGKLIELDEDNWHLML
QGEWMIEFFAPWCPACKNLAPTWERFARVAKDVQVQVAKIDVTTSPSLSG
RFFVTALPTIYHVKDGEFRQYRGARDGDALLYFVKKQQWQSIEPLSAWKK
PDTTHMSVLSYFFKLSHTLKDFNGRLQEEYGLPTWGSYALFAIATIFVGA
ALGLLLVCLVDFVYPPKKSQRQSFSESQDNLTEGLEDLATEEIEDDGDAE
ENDDEQRDSDEEEQEDDDEEEEDSEEQVGDLATKEKEADSEPEKEEKPEP
KQAGDAAPEKTEQVRKRKPRKGD*
BS14818.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5554-PA | 323 | CG5554-PA | 1..323 | 1..323 | 1695 | 100 | Plus |
CG5554-PB | 330 | CG5554-PB | 1..330 | 1..323 | 1677 | 97.9 | Plus |
prtp-PD | 353 | CG1837-PD | 103..206 | 36..136 | 185 | 39.4 | Plus |
prtp-PC | 416 | CG1837-PC | 166..269 | 36..136 | 185 | 39.4 | Plus |
prtp-PB | 416 | CG1837-PB | 166..269 | 36..136 | 185 | 39.4 | Plus |
prtp-PC | 416 | CG1837-PC | 1..208 | 1..189 | 166 | 27.4 | Plus |