Clone Sequence Records
BS14819.3prime Sequence
808 bp (720 high quality bases) assembled on 2006-10-13
> BS14819.3prime
ATGGTCTAGAAAGCTTTTAATCATTTACTTCGAACTCTTTGGAAATCGGT
AAGAACATGTCATCGTATGGGACCTTTTTGAAAATATCCTCGAAAACGGA
GCGAAACACACCGGCGAATATTTTCAGGTTTGTGGGCTCCAGCTCGTTCC
AAAACTCAACCCAGTGCAGATTGAACACCTGATTAATGGCTATCGTCATA
TCCGTGTTGGATTCGAAAAAGTTGTCTAGCCAGAATACCCATCGGTCCAT
GGTCACGAAGGGGGTTAGCTCGTATATCTTCAAGTAGCGCTTATTATTGC
GATACTCCATTATGACCTTCAATTTGAGAACAAAGCGAAAGTTCTGAAAA
TCCGAAAGGGATTCCCCCGTGGAATTCATCTGTACAATCCACACCCTTCC
CATACTGAAGTAATCGCCCTTATGGATTAGACTGGGTATCCGGCCGTGTA
TTTCAATCAAGCTGGATGTGGGATTCTCATCAAACCCACTGACCTTCGTG
ATCGTCGTGTTCTCGAAGCCGTAGTTCACTTGATTGAACAGATCGAAGTT
CAACCAGAAGGCGCCTACCATTGCATCATTCCAGAACTTTGAGTCCCTAA
TGTCCACCACATCAATGGGCTTCAATCCGATCGCCGGTATGCCTTTGGGA
TAATTCTTTATTATAGCATTCATGGAATTAACAATGCACTTAGAATCTCC
AAAGCGGCACTTCTTAATTTCCTTTGGGAGAATTTGGCCTTGCAACGATC
CGATGATCTGCAGGAGCACCAGAACGATTATTGGATCTTTCATGTCGACT
TGATAACT
BS14819.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31207-PA | 777 | CG31207-RA | 1..777 | 793..17 | 3860 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:07:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31207-RA | 835 | CG31207-RA | 45..822 | 793..16 | 3875 | 99.9 | Minus |
| CG7079-RB | 1237 | CG7079-RB | 348..454 | 549..443 | 205 | 79.4 | Minus |
| CG7079-RA | 934 | CG7079-RA | 348..454 | 549..443 | 205 | 79.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:07:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21046336..21046819 | 243..726 | 2420 | 100 | Plus |
| 3R | 32079331 | 3R | 21046045..21046272 | 16..243 | 1140 | 100 | Plus |
| 3R | 32079331 | 3R | 21046917..21046983 | 727..793 | 320 | 98.5 | Plus |
| 3R | 32079331 | 3R | 21048315..21048421 | 443..549 | 205 | 79.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:07:24 has no hits.
BS14819.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:47 Download gff for
BS14819.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31207-PA | 1..777 | 17..793 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:16:55 Download gff for
BS14819.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31207-RA | 36..822 | 16..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:52:58 Download gff for
BS14819.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31207-RA | 36..822 | 16..805 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:52:58 Download gff for
BS14819.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21046045..21046271 | 16..242 | 100 | <- | Plus |
| 3R | 21046336..21046819 | 243..726 | 100 | <- | Plus |
| 3R | 21046917..21046990 | 727..805 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:16:55 Download gff for
BS14819.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16871767..16871993 | 16..242 | 100 | <- | Plus |
| arm_3R | 16872058..16872541 | 243..726 | 100 | <- | Plus |
| arm_3R | 16872639..16872712 | 727..805 | 92 | | Plus |
BS14819.5prime Sequence
807 bp (744 high quality bases) assembled on 2006-10-13
> BS14819.5prime
GAAGTTATCAGTCGACATGAAAGATACAATAATCGTTCTGGTGCTCCTGC
AGATCATCGGATCGTTGCAAGGCCAAATTCTCCCAAAGGAAATTAAGAAG
TGCCGCTTTGGAGATTCTAAGTGCATTGTTAATTCCATGAATGCTATAAT
AAAGAATTATCCCAAAGGCATACCGGCGATCGGATTGAAGCCCATTGATG
TGGTGGACATTAGGGACTCAAAGTTCTGGAATGATGCAATGGTAGGCGCC
TTCTGGTTGAACTTCGATCTGTTCAATCAAGTGAACTACGGCTTCGAGAA
CACGACGATCACGAAGGTCAGTGGGTTTGATGAGAATCCCACATCCAGCT
TGATTGAAATACACGGCCGGATACCCAGTCTAATCCATAAGGGCGATTAC
TTCAGTATGGGAAGGGTGTGGATTGTACAGATGAATTCCACGGGGGAATC
CCTTTCGGATTTTCAGAACTTTCGCTTTGTTCTCAAATTGAAGGTCATAA
TGGAGTATCGCAATAATAAGCGCTACTTGAAGATATACGAGCTAACCCCC
TTCGTGACCATGGACCGATGGGTATTCTGGCTAGACAACTTTTTCGAATC
CAACACGGATATGACGATAGCCATTAATCAGGTGTTCAATCTGCACTGGG
TTGAGTTTTGGAACGAGCTGGAGCCCACAAACCTGAAAATATTCGCCGGT
GTGTTTCGCTCCGTTTTCGAGGATATTTTCAAAAAGGTCCCATACGATGA
CATGTTCTTACCGATTTCCAAAGAGTTCGAAGTAAATGATTAAAAGCTTT
CTAGACC
BS14819.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31207-PA | 777 | CG31207-RA | 1..777 | 17..793 | 3885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31207-RA | 835 | CG31207-RA | 45..822 | 17..794 | 3890 | 100 | Plus |
| CG7079-RB | 1237 | CG7079-RB | 348..454 | 261..367 | 205 | 79.4 | Plus |
| CG7079-RA | 934 | CG7079-RA | 348..454 | 261..367 | 205 | 79.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21046336..21046819 | 567..84 | 2420 | 100 | Minus |
| 3R | 32079331 | 3R | 21046045..21046272 | 794..567 | 1140 | 100 | Minus |
| 3R | 32079331 | 3R | 21046917..21046983 | 83..17 | 335 | 100 | Minus |
| 3R | 32079331 | 3R | 21048315..21048421 | 367..261 | 205 | 79.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:06:34 has no hits.
BS14819.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:47 Download gff for
BS14819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31207-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:45 Download gff for
BS14819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31207-RA | 36..822 | 6..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:24:01 Download gff for
BS14819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31207-RA | 36..822 | 6..794 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:24:01 Download gff for
BS14819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21046045..21046271 | 568..794 | 100 | <- | Minus |
| 3R | 21046336..21046819 | 84..567 | 100 | <- | Minus |
| 3R | 21046917..21046992 | 6..83 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:45 Download gff for
BS14819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16871767..16871993 | 568..794 | 100 | <- | Minus |
| arm_3R | 16872058..16872541 | 84..567 | 100 | <- | Minus |
| arm_3R | 16872639..16872714 | 6..83 | 94 | | Minus |
BS14819.complete Sequence
809 bp assembled on 2006-11-01
GenBank Submission: FJ637794
> BS14819.complete
GAAGTTATCAGTCGACATGAAAGATACAATAATCGTTCTGGTGCTCCTGC
AGATCATCGGATCGTTGCAAGGCCAAATTCTCCCAAAGGAAATTAAGAAG
TGCCGCTTTGGAGATTCTAAGTGCATTGTTAATTCCATGAATGCTATAAT
AAAGAATTATCCCAAAGGCATACCGGCGATCGGATTGAAGCCCATTGATG
TGGTGGACATTAGGGACTCAAAGTTCTGGAATGATGCAATGGTAGGCGCC
TTCTGGTTGAACTTCGATCTGTTCAATCAAGTGAACTACGGCTTCGAGAA
CACGACGATCACGAAGGTCAGTGGGTTTGATGAGAATCCCACATCCAGCT
TGATTGAAATACACGGCCGGATACCCAGTCTAATCCATAAGGGCGATTAC
TTCAGTATGGGAAGGGTGTGGATTGTACAGATGAATTCCACGGGGGAATC
CCTTTCGGATTTTCAGAACTTTCGCTTTGTTCTCAAATTGAAGGTCATAA
TGGAGTATCGCAATAATAAGCGCTACTTGAAGATATACGAGCTAACCCCC
TTCGTGACCATGGACCGATGGGTATTCTGGCTAGACAACTTTTTCGAATC
CAACACGGATATGACGATAGCCATTAATCAGGTGTTCAATCTGCACTGGG
TTGAGTTTTGGAACGAGCTGGAGCCCACAAACCTGAAAATATTCGCCGGT
GTGTTTCGCTCCGTTTTCGAGGATATTTTCAAAAAGGTCCCATACGATGA
CATGTTCTTACCGATTTCCAAAGAGTTCGAAGTAAATGATTAAAAGCTTT
CTAGACCAT
BS14819.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:43:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31207-RA | 777 | CG31207-PA | 1..777 | 17..793 | 3885 | 100 | Plus |
| CG7079-RB | 768 | CG7079-PB | 245..351 | 261..367 | 205 | 79.4 | Plus |
| CG7079-RA | 768 | CG7079-PA | 245..351 | 261..367 | 205 | 79.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:43:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31207-RA | 835 | CG31207-RA | 45..822 | 17..794 | 3890 | 100 | Plus |
| CG7079-RB | 1237 | CG7079-RB | 348..454 | 261..367 | 205 | 79.4 | Plus |
| CG7079-RA | 934 | CG7079-RA | 348..454 | 261..367 | 205 | 79.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:43:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21046336..21046819 | 567..84 | 2420 | 100 | Minus |
| 3R | 32079331 | 3R | 21046045..21046272 | 794..567 | 1140 | 100 | Minus |
| 3R | 32079331 | 3R | 21046917..21046983 | 83..17 | 335 | 100 | Minus |
| 3R | 32079331 | 3R | 21048315..21048421 | 367..261 | 205 | 79.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:43:47 has no hits.
BS14819.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:03 Download gff for
BS14819.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31207-RA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:58 Download gff for
BS14819.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31207-RA | 39..825 | 6..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:20:34 Download gff for
BS14819.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31207-RA | 45..819 | 17..791 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:03 Download gff for
BS14819.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31207-RA | 39..825 | 6..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:21 Download gff for
BS14819.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31207-RA | 45..819 | 17..791 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:21 Download gff for
BS14819.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21046048..21046271 | 568..791 | 100 | <- | Minus |
| 3R | 21046336..21046819 | 84..567 | 100 | <- | Minus |
| 3R | 21046917..21046983 | 17..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:20:34 Download gff for
BS14819.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16872639..16872705 | 17..83 | 100 | | Minus |
| arm_3R | 16871770..16871993 | 568..791 | 100 | <- | Minus |
| arm_3R | 16872058..16872541 | 84..567 | 100 | <- | Minus |
BS14819.pep Sequence
Translation from 16 to 792
> BS14819.pep
MKDTIIVLVLLQIIGSLQGQILPKEIKKCRFGDSKCIVNSMNAIIKNYPK
GIPAIGLKPIDVVDIRDSKFWNDAMVGAFWLNFDLFNQVNYGFENTTITK
VSGFDENPTSSLIEIHGRIPSLIHKGDYFSMGRVWIVQMNSTGESLSDFQ
NFRFVLKLKVIMEYRNNKRYLKIYELTPFVTMDRWVFWLDNFFESNTDMT
IAINQVFNLHWVEFWNELEPTNLKIFAGVFRSVFEDIFKKVPYDDMFLPI
SKEFEVND*
BS14819.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31207-PA | 258 | CG31207-PA | 1..258 | 1..258 | 1369 | 100 | Plus |
| CG7079-PB | 255 | CG7079-PB | 7..249 | 7..248 | 824 | 59.3 | Plus |
| CG7079-PA | 255 | CG7079-PA | 7..249 | 7..248 | 824 | 59.3 | Plus |
| CG31189-PB | 258 | CG31189-PB | 18..250 | 17..249 | 634 | 48.1 | Plus |
| CG11852-PA | 250 | CG11852-PA | 23..248 | 23..248 | 298 | 28.9 | Plus |
