Clone Sequence Records
BS14826.3prime Sequence
848 bp (786 high quality bases) assembled on 2006-10-13
> BS14826.3prime
ATGGTCTAGAAAGCTTCTAATCAATTTCGAGGGAACGTAGACCTTCTGTG
ACTCCGGAATCACTTGACTTTCGTTGGCCATTCTTTTTGATTTTGTTTAT
TTGCCAGTTTTCCGTATCCATCAGATAATCCCTCTGCTCCTTGAGCAACT
GCATCCACTGGAGCTTCAGGTCGGACATCTTGCCCGCCTCCCCGCCGTAT
TCCTCCGGCAACATGGATCGCGGGAAGTGCCGATATGGAGTGTCCGCATT
TGGCAAATGGAAATGGATTAGCTTGAACACCTCTCCCTTGATGAACGGCT
TGACCACGGCCATCACCTTGTCCACATACGACGGGCAGTTGAGCACGTGG
ATCTCCTTGAGCCGTACGGGATGTGCCTCCTGGACGAACTTCATGTAGAC
ACGCAGGGCGCCCAGTGCGGTTTTGGTCAGGTGGCGCAGCGTATAGCCAG
CCATGTCGAAAACTGGTATCTCGCCGTCCGACAAACGCTCCTCGTTCTCC
GTCGCAAATCGACAGTCGGCCACCATGAAAAAGACCTTGATGGCAGCCGT
AAAGTTGAACTTGTCCGCATCGAAGTCGATGAGGCGGTAAAAGAGCAGCT
TGTTGTTCTCCGGGGTCAAGCCGGGCAACGGCACCAGATCTGCGACTTGC
AGTAGCTGCTGGGAACTGGCATCCAACGGATCGCGATCGATGAAGATGTG
TGCATGTTTGTTACGCAGTCCGTAATTCAGTTCCAAGAGTCGCTGGGCGG
CGGATAGATCACCCCGCGTCGTGTGCAGAAAGCGGCGCAGAAGCAATCGG
GATATATTTTGCGGCAACTGTGGCTGCGCCTGCACCCAATCCTGCAAA
BS14826.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3823-PA | 888 | CG3823-RA | 57..888 | 848..17 | 4135 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:51:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3823-RA | 1282 | CG3823-RA | 203..1034 | 848..17 | 4145 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:51:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6305864..6306294 | 561..131 | 2155 | 100 | Minus |
X | 23542271 | X | 6304717..6304876 | 801..642 | 800 | 100 | Minus |
X | 23542271 | X | 6306381..6306497 | 133..17 | 585 | 100 | Minus |
X | 23542271 | X | 6305684..6305765 | 641..560 | 410 | 100 | Minus |
X | 23542271 | X | 6304177..6304223 | 848..802 | 220 | 97.9 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:51:14 has no hits.
BS14826.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:50 Download gff for
BS14826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3823-PA | 60..888 | 17..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:27 Download gff for
BS14826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3823-RA | 206..1038 | 13..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:02 Download gff for
BS14826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3823-RA | 206..1038 | 13..845 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:02 Download gff for
BS14826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6304180..6304223 | 802..845 | 97 | -> | Minus |
X | 6304717..6304876 | 642..801 | 100 | -> | Minus |
X | 6305684..6305765 | 560..641 | 100 | -> | Minus |
X | 6305866..6306293 | 132..559 | 100 | -> | Minus |
X | 6306383..6306501 | 13..131 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:27 Download gff for
BS14826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6198213..6198256 | 802..845 | 97 | -> | Minus |
arm_X | 6198750..6198909 | 642..801 | 100 | -> | Minus |
arm_X | 6199717..6199798 | 560..641 | 100 | -> | Minus |
arm_X | 6199899..6200326 | 132..559 | 100 | -> | Minus |
arm_X | 6200416..6200534 | 13..131 | 98 | | Minus |
BS14826.5prime Sequence
889 bp (817 high quality bases) assembled on 2006-10-13
> BS14826.5prime
GAAGTTATCAGTCGACATGGTCCACCTAAATGAGAAAGCGGAGGATCAGC
TGATGACCACAAGGATTTCGGATTTGCAGGATTGGCTGCAGGCGCAGCCA
CAGTTGCCGCAAAATATATCCCGATTGCTTCTGCGCCGCTTTCTGCACAC
GACGCGGGGTGATCTATCCGCCGCCCAGCGACTCTTGGAACTGAATTACG
GACTGCGTAACAAACATGCACACATCTTCATCGATCGCGATCCGTTGGAT
GCCAGTTCCCAGCAGCTACTGCAAGTCGCAGATCTGGTGCCGTTGCCCGG
CTTGACCCCGGAGAACAACAAGCTGCTCTTTTACCGCCTCATCGACTTCG
ATGCGGACAAGTTCAACTTTACGGCTGCCATCAAGGTCTTTTTCATGGTG
GCCGACTGTCGATTTGCGACGGAGAACGAGGAGCGTTTGTCGGACGGCGA
GATACCAGTTTTCGACATGGCTGGCTATACGCTGCGCCACCTGACCAAAA
CCGCACTGGGCGCCCTGCGTGTCTACATGAAGTTCGTCCAGGAGGCACAT
CCCGTACGGCTCAAGGAGATCCACGTGCTCAACTGCCCGTCGTATGTGGA
CAAGGTGATGGCCGTGGTCAAGCCGTTCATCAAGGGAGAGGTGTTCAAGC
TAATCCATTTCCATTTGCCAAATGCGGACACTCCATATCGGCACTTCCCG
CGATCCATGTTGCCGGAGGAATACGGCGGGGAGGCGGGCAAGATGTCCGA
CCTGAAGCTCCAGTGGATGCAGTTGCTCAAGGAGCAGAGGGATTATCTGA
TGGATACGGAAAACTGGCAAATAAACAAAATCAAAAAGAATGGCCAACGA
AAGTCAAGTGATTCCCGAGTCACAGAAGGTCTACGTTCC
BS14826.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3823-PA | 888 | CG3823-RA | 1..873 | 17..889 | 4340 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:37:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3823-RA | 1282 | CG3823-RA | 142..1019 | 12..889 | 4360 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:37:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6305864..6306294 | 360..790 | 2155 | 100 | Plus |
X | 23542271 | X | 6304717..6304876 | 120..279 | 800 | 100 | Plus |
X | 23542271 | X | 6304116..6304223 | 12..119 | 525 | 99.1 | Plus |
X | 23542271 | X | 6306381..6306482 | 788..889 | 495 | 99 | Plus |
X | 23542271 | X | 6305684..6305765 | 280..361 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:37:14 has no hits.
BS14826.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:51 Download gff for
BS14826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3823-PA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:32 Download gff for
BS14826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3823-RA | 142..1019 | 12..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:48 Download gff for
BS14826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3823-RA | 142..1019 | 12..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:48 Download gff for
BS14826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6306383..6306482 | 790..889 | 99 | | Plus |
X | 6305866..6306293 | 362..789 | 100 | -> | Plus |
X | 6304116..6304223 | 12..119 | 99 | -> | Plus |
X | 6304717..6304876 | 120..279 | 100 | -> | Plus |
X | 6305684..6305765 | 280..361 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:32 Download gff for
BS14826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6198149..6198256 | 12..119 | 99 | -> | Plus |
arm_X | 6198750..6198909 | 120..279 | 100 | -> | Plus |
arm_X | 6199717..6199798 | 280..361 | 100 | -> | Plus |
arm_X | 6199899..6200326 | 362..789 | 100 | -> | Plus |
arm_X | 6200416..6200515 | 790..889 | 99 | | Plus |
BS14826.complete Sequence
920 bp assembled on 2006-11-01
GenBank Submission: FJ637795
> BS14826.complete
GAAGTTATCAGTCGACATGGTCCACCTAAATGAGAAAGCGGAGGATCAGC
TGATGACCACAAGGATTTCGGATTTGCAGGATTGGCTGCAGGCGCAGCCA
CAGTTGCCGCAAAATATATCCCGATTGCTTCTGCGCCGCTTTCTGCACAC
GACGCGGGGTGATCTATCCGCCGCCCAGCGACTCTTGGAACTGAATTACG
GACTGCGTAACAAACATGCACACATCTTCATCGATCGCGATCCGTTGGAT
GCCAGTTCCCAGCAGCTACTGCAAGTCGCAGATCTGGTGCCGTTGCCCGG
CTTGACCCCGGAGAACAACAAGCTGCTCTTTTACCGCCTCATCGACTTCG
ATGCGGACAAGTTCAACTTTACGGCTGCCATCAAGGTCTTTTTCATGGTG
GCCGACTGTCGATTTGCGACGGAGAACGAGGAGCGTTTGTCGGACGGCGA
GATACCAGTTTTCGACATGGCTGGCTATACGCTGCGCCACCTGACCAAAA
CCGCACTGGGCGCCCTGCGTGTCTACATGAAGTTCGTCCAGGAGGCACAT
CCCGTACGGCTCAAGGAGATCCACGTGCTCAACTGCCCGTCGTATGTGGA
CAAGGTGATGGCCGTGGTCAAGCCGTTCATCAAGGGAGAGGTGTTCAAGC
TAATCCATTTCCATTTGCCAAATGCGGACACTCCATATCGGCACTTCCCG
CGATCCATGTTGCCGGAGGAATACGGCGGGGAGGCGGGCAAGATGTCCGA
CCTGAAGCTCCAGTGGATGCAGTTGCTCAAGGAGCAGAGGGATTATCTGA
TGGATACGGAAAACTGGCAAATAAACAAAATCAAAAAGAATGGCCAACGA
AAGTCAAGTGATTCCGGAGTCACAGAAGGTCTACGTTCCCTCGAAATTGA
TTAGAAGCTTTCTAGACCAT
BS14826.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:54:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3823-RA | 888 | CG3823-PA | 1..888 | 17..904 | 4440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:54:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3823-RA | 1282 | CG3823-RA | 142..1034 | 12..904 | 4450 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:54:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6305864..6306294 | 360..790 | 2155 | 100 | Plus |
X | 23542271 | X | 6304717..6304876 | 120..279 | 800 | 100 | Plus |
X | 23542271 | X | 6306381..6306497 | 788..904 | 585 | 100 | Plus |
X | 23542271 | X | 6304116..6304223 | 12..119 | 525 | 99.1 | Plus |
X | 23542271 | X | 6305684..6305765 | 280..361 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:54:20 has no hits.
BS14826.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:49 Download gff for
BS14826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3823-RA | 1..888 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:38 Download gff for
BS14826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3823-RA | 127..1023 | 12..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:57 Download gff for
BS14826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3823-RA | 147..1034 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:49 Download gff for
BS14826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3823-RA | 127..1023 | 12..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:13 Download gff for
BS14826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3823-RA | 147..1034 | 17..904 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:13 Download gff for
BS14826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6304121..6304223 | 17..119 | 100 | -> | Plus |
X | 6304717..6304876 | 120..279 | 100 | -> | Plus |
X | 6305684..6305765 | 280..361 | 100 | -> | Plus |
X | 6305866..6306293 | 362..789 | 100 | -> | Plus |
X | 6306383..6306497 | 790..904 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:57 Download gff for
BS14826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6198154..6198256 | 17..119 | 100 | -> | Plus |
arm_X | 6198750..6198909 | 120..279 | 100 | -> | Plus |
arm_X | 6199717..6199798 | 280..361 | 100 | -> | Plus |
arm_X | 6199899..6200326 | 362..789 | 100 | -> | Plus |
arm_X | 6200416..6200530 | 790..904 | 100 | | Plus |
BS14826.pep Sequence
Translation from 16 to 903
> BS14826.pep
MVHLNEKAEDQLMTTRISDLQDWLQAQPQLPQNISRLLLRRFLHTTRGDL
SAAQRLLELNYGLRNKHAHIFIDRDPLDASSQQLLQVADLVPLPGLTPEN
NKLLFYRLIDFDADKFNFTAAIKVFFMVADCRFATENEERLSDGEIPVFD
MAGYTLRHLTKTALGALRVYMKFVQEAHPVRLKEIHVLNCPSYVDKVMAV
VKPFIKGEVFKLIHFHLPNADTPYRHFPRSMLPEEYGGEAGKMSDLKLQW
MQLLKEQRDYLMDTENWQINKIKKNGQRKSSDSGVTEGLRSLEID*
BS14826.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3823-PA | 295 | CG3823-PA | 1..295 | 1..295 | 1536 | 100 | Plus |
CG3191-PC | 309 | CG3191-PC | 38..302 | 17..277 | 684 | 46.8 | Plus |
CG3191-PA | 309 | CG3191-PA | 38..302 | 17..277 | 684 | 46.8 | Plus |
CG3091-PC | 303 | CG3091-PC | 25..292 | 16..269 | 589 | 39.9 | Plus |
CG3091-PA | 303 | CG3091-PA | 25..292 | 16..269 | 589 | 39.9 | Plus |