Clone Sequence Records
BS14829.3prime Sequence
813 bp (761 high quality bases) assembled on 2006-10-13
> BS14829.3prime
ATGGTCTAGAAAGCTTTCAGTTCTGGCTGGGATCGCTGGAGGTGCTGGAG
TCCAGGTGCAATGCCTTCTCCAAGGACTTATAATCGTTCGAGATCTCGAC
GGCGTTGTTGAGATCGTTCATCATGGTAGCGATGAGACCCTGGTGCTCCT
GTTGCATTTTGTCTTGGATACGCCTGTTTTCCTCCGCCTGGCGAAGAATC
AAGGACTTGAAGCGATTCTTTTGAATTTGCTCTTCGTCCTGCACATATCC
TGGTCTTTTATAGACCGGCACTGGAGTCCTGATGCTTTTCGGCACATTCA
AGTGGCTGGTATCAGGCAGAGGTTTCTGTTTGACTGAGGAAATCTGGCCC
CTGCTCACCAGAATTTTTCGCTTGGCAGCCACTTTGGCGTCATAGGTGCG
TCGGGCCTGGTAGGCACTCTGGGTTTTGGTGACACTGGCACTGTTGGCCA
CATGGCTGGTAATCAGTTTCGGGATTCGACTGGGACTCCTGATTGTCGTA
AGCTTATTGGGTTGCTGCTGCTCGATACCTTGTACACTTTGTGGCTCACA
TTTTATAGGCAAAGTAAACTGTGACTTGGGAATCTGCATCAGATCTCTTC
GCCACAGTTGGTGATGAAGCTTCGAAAGATCAGGACTGGTAGAGCTCCGA
TGAAGTGGTTCCAGGACATTCTCCGTTGGCTTGGGTTTCTCCGCCTTCGG
TGGATCCAACTTGGTCACCCAAACACTCTCTGCTGTGGCCAACTTCACGG
GTGTCAGCGTGACAACAACTCTTTGCGGCGGAGTCAGAGAAGCATCCTCC
ATTACCAGCTGAA
BS14829.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2267-PA | 1173 | CG2267-RA | 378..1173 | 812..17 | 3980 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:15:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2267-RB | 1731 | CG2267-RB | 572..1367 | 812..17 | 3980 | 100 | Minus |
| CG2267-RA | 1734 | CG2267-RA | 575..1370 | 812..17 | 3980 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:14:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30627605..30628400 | 17..812 | 3980 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:15:00 has no hits.
BS14829.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:51 Download gff for
BS14829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2267-PA | 379..1173 | 17..811 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:11 Download gff for
BS14829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2267-RA | 573..1370 | 17..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:46 Download gff for
BS14829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2267-RA | 573..1370 | 17..813 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:46 Download gff for
BS14829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30627605..30628400 | 17..813 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:11 Download gff for
BS14829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26453327..26454122 | 17..813 | 99 | | Plus |
BS14829.5prime Sequence
861 bp (742 high quality bases) assembled on 2006-10-13
> BS14829.5prime
GAAGTTATCAGTCGACATGGCCGGAGAAACAGAGCAGCTAACGTTGCTTA
GTGAACTGAACAATATTGGAGGTGGCGAGTTCGAGTCGGGATACTGCCTG
AATGAGAAACCTATTCTGCCGCCAGTGATGACTGACTGGAAGAGACTGGA
AATGATGCGACTGCGCTTGTGCGCCTTAACCAAGGAGGTGGTCCAGAAGA
GGAACCAGATTACAAATCCTGAACGGAGGGATGCATCTACCAATACAAAA
TCGCAACAAGGATTTGGTTGTCCGGTCATAATGGGACGCTTCCGCCAGAG
ATTACAGCAATCGGAGACAATGATCTATGATCACACAGCCGAGATGACCA
TGCAGATTTCTGCTCCGCCTAGCATGCCAATTGGGATGACTTCTCAGCTG
GTAATGGAGGATGCTTCTCTGACTCCGCCGCAAAGAGTTGTTGTCACGCT
GACACCCGTGAAGTTGGCCACAGCAGAGAGTGTTTGGGTGACCAAGTTGG
ATCCACCGAAGGCGGAGAAACCCAAGCCAACGGAGAATGTCCTGGAACCA
CTTCATCGGAGCTCTACCAGTCCTGATCTTTCGAAGCTTCATCACCAACT
GTGGCGAAGAGATCTGATGCAGATTCCCAAGTCACAGTTTACTTTGCCTA
TAAAATGTGAGCCACAAAGTGTACAAGGTATCGAGCAGCAGCAACCCAAT
AAGCTTACGACAATCAGGAGTCCCAGTCGAATCCCGAAACTGATTACCAG
CCATGTGGCCAACAGTGCCAGTGTCACCAAAACCCAAAGTGCCTACCAGG
CCCGACGCACCTATGACGCCAAAGTGGCTGCCCAGCGAAAAATTTCTGGT
GAGCAGGGGCC
BS14829.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2267-PA | 1173 | CG2267-RA | 1..828 | 17..844 | 4090 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:05:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2267-RA | 1734 | CG2267-RA | 196..1041 | 15..861 | 4180 | 99.6 | Plus |
| CG2267-RB | 1731 | CG2267-RB | 196..1038 | 15..861 | 4125 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:04:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30627934..30628667 | 861..127 | 3595 | 99.6 | Minus |
| 3R | 32079331 | 3R | 30628721..30628833 | 127..15 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 18:04:56 has no hits.
BS14829.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:52 Download gff for
BS14829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2267-PA | 1..844 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:45 Download gff for
BS14829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2267-RA | 191..1041 | 8..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:11 Download gff for
BS14829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2267-RA | 191..1041 | 8..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:11 Download gff for
BS14829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30627934..30628666 | 128..861 | 99 | <- | Minus |
| 3R | 30628721..30628838 | 8..127 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:45 Download gff for
BS14829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26453656..26454388 | 128..861 | 99 | <- | Minus |
| arm_3R | 26454443..26454560 | 8..127 | 96 | | Minus |
BS14829.complete Sequence
1205 bp assembled on 2006-11-01
GenBank Submission: FJ637796
> BS14829.complete
GAAGTTATCAGTCGACATGGCCGGAGAAACAGAGCAGCTAACGTTGCTTA
GTGAACTGAACAATATTGGAGGTGGCGAGTTCGAGTCGGGATACTGCCTG
AATGAGAAACCTATTCTGCCGCCAGTGATGACTGACTGGAAGAGACTGGA
AATGATGCGACTGCGCTTGTGCGCCTTAACCAAGGAGGTGGTCCAGAAGA
GGAACCAGATTACAAATCCTGAACGGAGGGATGCATCTACCAATACAAAA
TCGCAACAAGGATTTGGTTGTCCGGTCATAATGGGACGCTTCCGCCAGAG
ATTACAGCAATCGGAGACAATGATCTATGATCACACAGCCGAGATGACCA
TGCAGATTTCTGCTCCGCCTAGCATGCCAATTGGGATGACTTCTCAGCTG
GTAATGGAGGATGCTTCTCTGACTCCGCCGCAAAGAGTTGTTGTCACGCT
GACACCCGTGAAGTTGGCCACAGCAGAGAGTGTTTGGGTGACCAAGTTGG
ATCCACCGAAGGCGGAGAAACCCAAGCCAACGGAGAATGTCCTGGAACCA
CTTCATCGGAGCTCTACCAGTCCTGATCTTTCGAAGCTTCATCACCAACT
GTGGCGAAGAGATCTGATGCAGATTCCCAAGTCACAGTTTACTTTGCCTA
TAAAATGTGAGCCACAAAGTGTACAAGGTATCGAGCAGCAGCAACCCAAT
AAGCTTACGACAATCAGGAGTCCCAGTCGAATCCCGAAACTGATTACCAG
CCATGTGGCCAACAGTGCCAGTGTCACCAAAACCCAGAGTGCCTACCAGG
CCCGACGCACCTATGACGCCAAAGTGGCTGCCAAGCGAAAAATTCTGGTG
AGCAGGGGCCAGATTTCCTCAGTCAAACAGAAACCTCTGCCTGATACCAG
CCACTTGAATGTGCCGAAAAGCATCAGGACTCCAGTGCCGGTCTATAAAA
GACCAGGATATGTGCAGGACGAAGAGCAAATTCAAAAGAATCGCTTCAAG
TCCTTGATTCTTCGCCAGGCGGAGGAAAACAGGCGTATCCAAGACAAAAT
GCAACAGGAGCACCAGGGTCTCATCGCTACCATGATGAACGATCTCAACA
ACGCCGTCGAGATCTCGAACGATTATAAGTCCTTGGAGAAGGCATTGCAC
CTGGACTCCAGCACCTCCAGCGATCCCAGCCAGAACTGAAAGCTTTCTAG
ACCAT
BS14829.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:30:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2267-RA | 1173 | CG2267-PA | 1..1173 | 17..1189 | 5865 | 100 | Plus |
| CG2267-RB | 1170 | CG2267-PB | 1..1170 | 17..1189 | 5785 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:30:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2267-RA | 1734 | CG2267-RA | 196..1370 | 15..1189 | 5875 | 100 | Plus |
| CG2267-RB | 1731 | CG2267-RB | 196..1367 | 15..1189 | 5795 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:30:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30627605..30628667 | 1189..127 | 5315 | 100 | Minus |
| 3R | 32079331 | 3R | 30628721..30628833 | 127..15 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:30:34 has no hits.
BS14829.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:50 Download gff for
BS14829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2267-RA | 1..1173 | 17..1189 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:39 Download gff for
BS14829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2267-RA | 191..1370 | 8..1189 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:01 Download gff for
BS14829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2267-RA | 198..1369 | 17..1188 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:50 Download gff for
BS14829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2267-RA | 191..1370 | 8..1189 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:02 Download gff for
BS14829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2267-RA | 198..1369 | 17..1188 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:02 Download gff for
BS14829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30627606..30628666 | 128..1188 | 100 | <- | Minus |
| 3R | 30628721..30628831 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:01 Download gff for
BS14829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26453328..26454388 | 128..1188 | 100 | <- | Minus |
| arm_3R | 26454443..26454553 | 17..127 | 100 | | Minus |
BS14829.pep Sequence
Translation from 16 to 1188
> BS14829.pep
MAGETEQLTLLSELNNIGGGEFESGYCLNEKPILPPVMTDWKRLEMMRLR
LCALTKEVVQKRNQITNPERRDASTNTKSQQGFGCPVIMGRFRQRLQQSE
TMIYDHTAEMTMQISAPPSMPIGMTSQLVMEDASLTPPQRVVVTLTPVKL
ATAESVWVTKLDPPKAEKPKPTENVLEPLHRSSTSPDLSKLHHQLWRRDL
MQIPKSQFTLPIKCEPQSVQGIEQQQPNKLTTIRSPSRIPKLITSHVANS
ASVTKTQSAYQARRTYDAKVAAKRKILVSRGQISSVKQKPLPDTSHLNVP
KSIRTPVPVYKRPGYVQDEEQIQKNRFKSLILRQAEENRRIQDKMQQEHQ
GLIATMMNDLNNAVEISNDYKSLEKALHLDSSTSSDPSQN*
BS14829.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2267-PA | 390 | CG2267-PA | 1..390 | 1..390 | 1998 | 100 | Plus |
| CG2267-PB | 389 | CG2267-PB | 1..389 | 1..390 | 1982 | 99.7 | Plus |
