Clone Sequence Records
BS14831.3prime Sequence
600 bp (494 high quality bases) assembled on 2006-10-13
> BS14831.3prime
ATGGTCTAGAAAGCTTTTAGATCTTAATGGTCTGGGCCATTGCCATTCGT
TCCTGAATTTCCTCTGCGGGATGTGGCTGCTGCTCTGGGAGAGCCTCGGA
CTGGATCCGAGGTTTGGGATCTCCGTCGATCTGCATCTGATACATAACGG
TTGCTATAATCAGACTAAAGTGCAGCATGGTCAACAGGAATCCGAAAAGG
ACAAGAGAAGCGTAGTAGCTCCAGCATAGGTCGCTCCACCACAAGTGCCA
CACCATCTTCAGGTGGAAAGCAGCCAGACACTGGTGAAGGTAGCAGTTCC
ACATGAGAACAATCGCCACCAGCAAGGAGATGTGATAGATCTGAAAAAAT
GCGGGGAGAAGCAGTAAGATGTTTACATATAGGTTAAAGTCCCACATGCT
TTCCCCGAACTCCACTCCATAATTGGTTTCCGGTTGTAACGGAGCGAACA
TCTGGCCGATAATAGGAATATTCTGCCAAAGACTTGTCTGGGCTGTAAAA
ACATTTATGATTCGATTGATTTCCATGCTTATGTAACCTACAAGTACGTT
GTACACAAGCAAGTTTAGAGCAGGCATAAAAATCATGTCGACTGATAACT
BS14831.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11404-PA | 570 | CG11404-RA | 1..570 | 586..17 | 2825 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:51:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11404-RA | 806 | CG11404-RA | 22..595 | 588..15 | 2855 | 99.8 | Minus |
CG11404-RB | 797 | CG11404-RB | 22..586 | 588..15 | 2725 | 98.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:51:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22548803..22549131 | 343..15 | 1645 | 100 | Minus |
3L | 28110227 | 3L | 22548591..22548752 | 502..341 | 795 | 99.4 | Minus |
3L | 28110227 | 3L | 22548458..22548544 | 588..502 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:51:24 has no hits.
BS14831.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:52 Download gff for
BS14831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11404-PA | 1..570 | 17..586 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:29 Download gff for
BS14831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11404-RA | 11..595 | 15..598 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:04 Download gff for
BS14831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11404-RA | 11..595 | 15..598 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:04 Download gff for
BS14831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22548447..22548544 | 502..598 | 95 | -> | Minus |
3L | 22548592..22548752 | 341..501 | 99 | -> | Minus |
3L | 22548806..22549131 | 15..340 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:29 Download gff for
BS14831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22541692..22541852 | 341..501 | 99 | -> | Minus |
arm_3L | 22541906..22542231 | 15..340 | 100 | | Minus |
arm_3L | 22541547..22541644 | 502..598 | 95 | -> | Minus |
BS14831.5prime Sequence
600 bp (515 high quality bases) assembled on 2006-10-13
> BS14831.5prime
GAAGTTATCAGTCGACATGATTTTTATGCCTGCTCTAAACTTGCTTGTGT
ACAACGTACTTGTAGGTTACATAAGCATGGAAATCAATCGAATCATAAAT
GTTTCTACAGCCCAGACAAGTCTTTGGCAGAATATTCCTATTATCGGCCA
GATGTTCGCTCCGTTACAACCGGAAACCAATTATGGAGTGGAGTTCGGGG
AAAGCATGTGGGACTTTAACCTATATGTAAACATCTTACTGCTTCTCCCC
GCATTTTTTCAGATCTATCACATCTCCTTGCTGGTGGCGATTGTTCTCAT
GTGGAACTGCTACCTTCACCAGTGTCTGGCTGCTTTCCACCTGAAGATGG
TGTGGCACTTGTGGTGGAGCGACCTATGCTGGAGCTACTACGCTTCTCTT
GTCCTTTTCGGATTCCTGTTGACCATGCTGCACTTTAGTCTGATTATAGC
AACCGTTATGTATCAGATGCAGATCGACGGAGATCCCAAACCTCGGATCC
AGTCCGAGGCTCTCCCAGAGCAGCAGCCACATCCCGCAGAGGAAATTCAG
GAACGAATGGCAATGGCCCAGACCATTAAGATCTAAAAGCTTTCTAGACC
BS14831.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11404-PA | 570 | CG11404-RA | 1..570 | 17..586 | 2850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:05:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11404-RA | 806 | CG11404-RA | 22..595 | 15..588 | 2870 | 100 | Plus |
CG11404-RB | 797 | CG11404-RB | 22..586 | 15..588 | 2725 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:05:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22548803..22549131 | 260..588 | 1645 | 100 | Plus |
3L | 28110227 | 3L | 22548591..22548752 | 101..262 | 810 | 100 | Plus |
3L | 28110227 | 3L | 22548458..22548544 | 15..101 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:05:09 has no hits.
BS14831.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:53 Download gff for
BS14831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11404-PA | 1..570 | 17..586 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:48 Download gff for
BS14831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11404-RA | 11..595 | 5..588 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:13 Download gff for
BS14831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11404-RA | 11..595 | 5..588 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:13 Download gff for
BS14831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22548447..22548544 | 5..101 | 95 | -> | Plus |
3L | 22548592..22548752 | 102..262 | 100 | -> | Plus |
3L | 22548806..22549131 | 263..588 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:48 Download gff for
BS14831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22541547..22541644 | 5..101 | 95 | -> | Plus |
arm_3L | 22541692..22541852 | 102..262 | 100 | -> | Plus |
arm_3L | 22541906..22542231 | 263..588 | 100 | | Plus |
BS14831.complete Sequence
602 bp assembled on 2006-11-01
GenBank Submission: FJ637797
> BS14831.complete
GAAGTTATCAGTCGACATGATTTTTATGCCTGCTCTAAACTTGCTTGTGT
ACAACGTACTTGTAGGTTACATAAGCATGGAAATCAATCGAATCATAAAT
GTTTCTACAGCCCAGACAAGTCTTTGGCAGAATATTCCTATTATCGGCCA
GATGTTCGCTCCGTTACAACCGGAAACCAATTATGGAGTGGAGTTCGGGG
AAAGCATGTGGGACTTTAACCTATATGTAAACATCTTACTGCTTCTCCCC
GCATTTTTTCAGATCTATCACATCTCCTTGCTGGTGGCGATTGTTCTCAT
GTGGAACTGCTACCTTCACCAGTGTCTGGCTGCTTTCCACCTGAAGATGG
TGTGGCACTTGTGGTGGAGCGACCTATGCTGGAGCTACTACGCTTCTCTT
GTCCTTTTCGGATTCCTGTTGACCATGCTGCACTTTAGTCTGATTATAGC
AACCGTTATGTATCAGATGCAGATCGACGGAGATCCCAAACCTCGGATCC
AGTCCGAGGCTCTCCCAGAGCAGCAGCCACATCCCGCAGAGGAAATTCAG
GAACGAATGGCAATGGCCCAGACCATTAAGATCTAAAAGCTTTCTAGACC
AT
BS14831.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:57:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11404-RA | 570 | CG11404-PA | 1..570 | 17..586 | 2850 | 100 | Plus |
CG11404-RB | 561 | CG11404-PB | 1..561 | 17..586 | 2680 | 98.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:57:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11404-RA | 806 | CG11404-RA | 22..595 | 15..588 | 2870 | 100 | Plus |
CG11404-RB | 797 | CG11404-RB | 22..586 | 15..588 | 2700 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:56:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22548803..22549131 | 260..588 | 1645 | 100 | Plus |
3L | 28110227 | 3L | 22548591..22548752 | 101..262 | 810 | 100 | Plus |
3L | 28110227 | 3L | 22548458..22548544 | 15..101 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:57:00 has no hits.
BS14831.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:51 Download gff for
BS14831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11404-RA | 1..570 | 17..586 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:41 Download gff for
BS14831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11404-RA | 11..595 | 5..588 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:04 Download gff for
BS14831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11404-RA | 24..591 | 17..584 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:52 Download gff for
BS14831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11404-RA | 11..595 | 5..588 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:43 Download gff for
BS14831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11404-RA | 24..591 | 17..584 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:43 Download gff for
BS14831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22548592..22548752 | 102..262 | 100 | -> | Plus |
3L | 22548806..22549127 | 263..584 | 100 | | Plus |
3L | 22548460..22548544 | 17..101 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:04 Download gff for
BS14831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22541560..22541644 | 17..101 | 100 | -> | Plus |
arm_3L | 22541692..22541852 | 102..262 | 100 | -> | Plus |
arm_3L | 22541906..22542227 | 263..584 | 100 | | Plus |
BS14831.pep Sequence
Translation from 16 to 585
> BS14831.pep
MIFMPALNLLVYNVLVGYISMEINRIINVSTAQTSLWQNIPIIGQMFAPL
QPETNYGVEFGESMWDFNLYVNILLLLPAFFQIYHISLLVAIVLMWNCYL
HQCLAAFHLKMVWHLWWSDLCWSYYASLVLFGFLLTMLHFSLIIATVMYQ
MQIDGDPKPRIQSEALPEQQPHPAEEIQERMAMAQTIKI*
BS14831.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11404-PA | 189 | CG11404-PA | 1..189 | 1..189 | 1005 | 100 | Plus |
CG11404-PB | 186 | CG11404-PB | 1..186 | 1..189 | 978 | 98.4 | Plus |