Clone BS14833 Report

Search the DGRC for BS14833

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:148
Well:33
Vector:pDNR-Dual
Associated Gene/Transcriptpsh-RA
Protein status:BS14833.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14833.3prime Sequence

841 bp (839 high quality bases) assembled on 2006-10-13

> BS14833.3prime
ATGGTCTAGAAAGCTTTTACACCCGATTGTCCGGCCAGACAATGCCCTCG
ATAAAGTCCAGATAGGACGAGACACGCGTATAGAGTCCCGGTGTGACGGT
GGCGCATCCGAATCCCGACGAGATGACGCCCATGATGGTGTACATGCCGT
CCTCCACGTTGAGCTCATGAATGAGCGGCCCACCGGAGTCGCCCTTGCAT
GCGTCGGCGATGAGCTTTTGATCAATGGCGCACAGCAACGAATCGATCAC
GCCCTGCTTGAGCAACCTTATGGAACCGGGCTGCTCCGCATAGGATATAT
TGCATTGGTCCAGAGGCACCAGCTCCAGACCAGCGCGCAACAGGATCTTA
GATCGCGCCCGAGTGGTTACATTTAGGACGCCCCAACCGGCGACAAAGAA
CTTGGAGTTCGATGGCGGATCGGTGGCATCCGTATGGAGACAAGCGGGCC
GGATGTTATCCGTCTCGACGACATCACGTTCCAGTTCCAAAATGGCGATA
TCGTTGTACTTATTGCCCACATACTGCGGATGGATCTTAACGCTTCGTAT
GACGATATCCTGGTAGGAATGGTCTGGATTTTCAATGTTCACAGCTCCCA
AGCGAACAAAGGCCGGCGTATTGGCATCGGTGTTGACACAATGTGCGGCG
GTCAGGACGAAGCGACTGGCGATTAGCGATCCGCCGCATCGGAAATCGGT
GCCAAAAGTGATGTAACCAATGGCCGCCATATGGGGATATACACCCGGAT
CAACCGGATAACCGCCCACGATGTGTATGACCAATTGATTGCCGCTCCTC
TGCTGTTTTCGCTCGCGAATCTTCTTGCAGGCTGCCACTGC

BS14833.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG6367-PA 1185 psh-RA 361..1185 841..17 4125 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
psh-RA 1645 CG6367-RA 659..1484 841..16 4130 100 Minus
Hayan-RD 2290 CG6361-RD 1518..2238 746..32 485 72.6 Minus
Hayan-RB 2408 CG6361-RB 1518..2238 746..32 485 72.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18484648..18484995 16..363 1740 100 Plus
X 23542271 X 18485296..18485581 548..833 1430 100 Plus
X 23542271 X 18485054..18485237 364..547 920 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:23:05 has no hits.

BS14833.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:54 Download gff for BS14833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6367-PA 361..1185 17..841 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:25:21 Download gff for BS14833.3prime
Subject Subject Range Query Range Percent Splice Strand
psh-RA 659..1487 11..841 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:11 Download gff for BS14833.3prime
Subject Subject Range Query Range Percent Splice Strand
psh-RA 659..1487 11..841 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:11 Download gff for BS14833.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18484645..18484995 11..363 99 <- Plus
X 18485054..18485237 364..547 100 <- Plus
X 18485296..18485581 548..833 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:25:21 Download gff for BS14833.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18378678..18379028 11..363 99 <- Plus
arm_X 18379087..18379270 364..547 100 <- Plus
arm_X 18379329..18379614 548..833 100   Plus

BS14833.5prime Sequence

850 bp (749 high quality bases) assembled on 2006-10-13

> BS14833.5prime
GAAGTTATCAGTCGACATGCCATTGAAGTGGTCCCTGCTACTCGGCACTT
TTGTGCTCATCAGCTGCTCCTCCGTGGAAGCAGCCGTCACAGTGGGTCGG
GCCTGCAAGGTGACGGATACCATGCCCGGTATCTGCAGAACATCCTCCGA
TTGTGAGCCCCTAATCGATGGCTACATCAAGTCGGGAGTCCTGACGCTCA
ACGATGTGCCCAGCTGTGGCCTCGGCGCTTGGGGTGAGATCTTCTGCTGT
CCCACCAAGCCGTGCTGTGACAATAGTACCATAACAAGCGTTTCCACAAG
CTCCACCACAAGCACAAAAGCTCCAATGACCAGTGGTCGTGTCGATGTGC
CCACGTTCGGAAGCGGTGATCGCCCAGCAGTGGCAGCCTGCAAGAAGATT
CGCGAGCGAAAACAGCAGAGGAGCGGCAATCAATTGGTCATACACATCGT
GGGCGGTTATCCGGTTGATCCGGGTGTATATCCCCATATGGCGGCCATTG
GTTACATCACTTTTGGCACCGATTTCCGATGCGGCGGATCGCTAATCGCC
AGTCGCTTCGTCCTGACCGCCGCACATTGTGTCAACACCGATGCCAATAC
GCCGGCCTTTGTTCGCTTGGGAGCTGTGAACATTGAAAATCCAGACCATT
CCTACCAGGATATCGTCATACGAAGCGTTAAGATCCATCCGCAGTATGTG
GGCAATAAGTACAACGATATCGCCATTTTTGAACTGGAACGTGATGTCGT
CGAGACGGATAACATCCGGCCCGCTTGTCTCCATACGGATGCCACCGATC
CGCCATCGAACTCCAAGTTCTTTGTCGCCGGTTGGGGCCTCCCTAAATGT

BS14833.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6367-PA 1185 psh-RA 1..822 17..838 4085 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
psh-RA 1645 CG6367-RA 299..1131 17..850 4115 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:54:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18485296..18485581 670..385 1430 100 Minus
X 23542271 X 18485813..18485999 276..90 935 100 Minus
X 23542271 X 18485066..18485237 842..671 830 98.8 Minus
X 23542271 X 18485645..18485756 386..275 560 100 Minus
X 23542271 X 18486063..18486138 92..17 380 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:54:55 has no hits.

BS14833.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:54 Download gff for BS14833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6367-PA 1..833 17..850 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:44:54 Download gff for BS14833.5prime
Subject Subject Range Query Range Percent Splice Strand
psh-RA 299..1131 17..850 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:48:09 Download gff for BS14833.5prime
Subject Subject Range Query Range Percent Splice Strand
psh-RA 299..1131 17..850 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:48:09 Download gff for BS14833.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18485059..18485237 671..850 98 <- Minus
X 18485296..18485579 387..670 100 <- Minus
X 18485645..18485754 277..386 100 <- Minus
X 18485813..18485996 93..276 100 <- Minus
X 18486063..18486138 17..92 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:44:54 Download gff for BS14833.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18380096..18380171 17..92 100   Minus
arm_X 18379846..18380029 93..276 100 <- Minus
arm_X 18379092..18379270 671..850 98 <- Minus
arm_X 18379329..18379612 387..670 100 <- Minus
arm_X 18379678..18379787 277..386 100 <- Minus

BS14833.complete Sequence

1217 bp assembled on 2006-11-01

GenBank Submission: FJ637799

> BS14833.complete
GAAGTTATCAGTCGACATGCCATTGAAGTGGTCCCTGCTACTCGGCACTT
TTGTGCTCATCAGCTGCTCCTCCGTGGAAGCAGCCGTCACAGTGGGTCGG
GCCTGCAAGGTGACGGATACCATGCCCGGTATCTGCAGAACATCCTCCGA
TTGTGAGCCCCTAATCGATGGCTACATCAAGTCGGGAGTCCTGACGCTCA
ACGATGTGCCCAGCTGTGGCCTCGGCGCTTGGGGTGAGATCTTCTGCTGT
CCCACCAAGCCGTGCTGTGACAATAGTACCATAACAAGCGTTTCCACAAG
CTCCACCACAAGCACAAAAGCTCCAATGACCAGTGGTCGTGTCGATGTGC
CCACGTTCGGAAGCGGTGATCGCCCAGCAGTGGCAGCCTGCAAGAAGATT
CGCGAGCGAAAACAGCAGAGGAGCGGCAATCAATTGGTCATACACATCGT
GGGCGGTTATCCGGTTGATCCGGGTGTATATCCCCATATGGCGGCCATTG
GTTACATCACTTTTGGCACCGATTTCCGATGCGGCGGATCGCTAATCGCC
AGTCGCTTCGTCCTGACCGCCGCACATTGTGTCAACACCGATGCCAATAC
GCCGGCCTTTGTTCGCTTGGGAGCTGTGAACATTGAAAATCCAGACCATT
CCTACCAGGATATCGTCATACGAAGCGTTAAGATCCATCCGCAGTATGTG
GGCAATAAGTACAACGATATCGCCATTTTGGAACTGGAACGTGATGTCGT
CGAGACGGATAACATCCGGCCCGCTTGTCTCCATACGGATGCCACCGATC
CGCCATCGAACTCCAAGTTCTTTGTCGCCGGTTGGGGCGTCCTAAATGTA
ACCACTCGGGCGCGATCTAAGATCCTGTTGCGCGCTGGTCTGGAGCTGGT
GCCTCTGGACCAATGCAATATATCCTATGCGGAGCAGCCCGGTTCCATAA
GGTTGCTCAAGCAGGGCGTGATCGATTCGTTGCTGTGCGCCATTGATCAA
AAGCTCATCGCCGACGCATGCAAGGGCGACTCCGGTGGGCCGCTCATTCA
TGAGCTCAACGTGGAGGACGGCATGTACACCATCATGGGCGTCATCTCGT
CGGGATTCGGATGCGCCACCGTCACACCGGGACTCTATACGCGTGTCTCG
TCCTATCTGGACTTTATCGAGGGCATTGTCTGGCCGGACAATCGGGTGTA
AAAGCTTTCTAGACCAT

BS14833.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
psh-RA 1185 CG6367-PA 1..1185 17..1201 5925 100 Plus
Hayan-RD 1914 CG6361-PD 1419..1899 706..1186 410 72.3 Plus
Hayan-RB 1914 CG6361-PB 1419..1899 706..1186 410 72.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
psh-RA 1645 CG6367-RA 299..1484 17..1202 5930 100 Plus
Hayan-RD 2290 CG6361-RD 1758..2238 706..1186 410 72.3 Plus
Hayan-RB 2408 CG6361-RB 1758..2238 706..1186 410 72.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18484648..18484995 1202..855 1740 100 Minus
X 23542271 X 18485296..18485581 670..385 1430 100 Minus
X 23542271 X 18485813..18485999 276..90 935 100 Minus
X 23542271 X 18485054..18485237 854..671 920 100 Minus
X 23542271 X 18485645..18485756 386..275 560 100 Minus
X 23542271 X 18486063..18486138 92..17 380 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:23:24 has no hits.

BS14833.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:54 Download gff for BS14833.complete
Subject Subject Range Query Range Percent Splice Strand
psh-RA 1..1185 17..1201 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:44 Download gff for BS14833.complete
Subject Subject Range Query Range Percent Splice Strand
psh-RA 299..1487 17..1207 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:07 Download gff for BS14833.complete
Subject Subject Range Query Range Percent Splice Strand
psh-RA 299..1481 17..1199 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:54 Download gff for BS14833.complete
Subject Subject Range Query Range Percent Splice Strand
psh-RA 299..1487 17..1207 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:26 Download gff for BS14833.complete
Subject Subject Range Query Range Percent Splice Strand
psh-RA 299..1481 17..1199 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:26 Download gff for BS14833.complete
Subject Subject Range Query Range Percent Splice Strand
X 18485296..18485579 387..670 100 <- Minus
X 18485645..18485754 277..386 100 <- Minus
X 18485813..18485996 93..276 100 <- Minus
X 18486063..18486138 17..92 100   Minus
X 18484651..18484995 855..1199 100 <- Minus
X 18485054..18485237 671..854 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:07 Download gff for BS14833.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18379846..18380029 93..276 100 <- Minus
arm_X 18380096..18380171 17..92 100   Minus
arm_X 18378684..18379028 855..1199 100 <- Minus
arm_X 18379087..18379270 671..854 100 <- Minus
arm_X 18379329..18379612 387..670 100 <- Minus
arm_X 18379678..18379787 277..386 100 <- Minus

BS14833.pep Sequence

Translation from 16 to 1200

> BS14833.pep
MPLKWSLLLGTFVLISCSSVEAAVTVGRACKVTDTMPGICRTSSDCEPLI
DGYIKSGVLTLNDVPSCGLGAWGEIFCCPTKPCCDNSTITSVSTSSTTST
KAPMTSGRVDVPTFGSGDRPAVAACKKIRERKQQRSGNQLVIHIVGGYPV
DPGVYPHMAAIGYITFGTDFRCGGSLIASRFVLTAAHCVNTDANTPAFVR
LGAVNIENPDHSYQDIVIRSVKIHPQYVGNKYNDIAILELERDVVETDNI
RPACLHTDATDPPSNSKFFVAGWGVLNVTTRARSKILLRAGLELVPLDQC
NISYAEQPGSIRLLKQGVIDSLLCAIDQKLIADACKGDSGGPLIHELNVE
DGMYTIMGVISSGFGCATVTPGLYTRVSSYLDFIEGIVWPDNRV*

BS14833.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:36
Subject Length Description Subject Range Query Range Score Percent Strand
psh-PA 394 CG6367-PA 1..394 1..394 2082 100 Plus
Hayan-PA 378 CG6361-PA 11..377 8..393 1116 60.1 Plus
Hayan-PD 637 CG6361-PD 339..636 87..393 954 62.8 Plus
Hayan-PB 637 CG6361-PB 339..636 87..393 954 62.8 Plus
spirit-PD 393 CG2056-PD 107..371 119..394 420 37 Plus
Hayan-PD 637 CG6361-PD 11..138 8..139 191 40 Plus
Hayan-PB 637 CG6361-PB 11..138 8..139 191 40 Plus