Clone Sequence Records
BS14836.complete Sequence
386 bp assembled on 2010-02-09
GenBank Submission: KX802043
> BS14836.complete
GAAGTTATCAGTCGACATGAGAACCTTGACGGCATTTGCGATTATCGCTT
TTTTTGCACTGGCTCTAACGGAGGCGGCTGTTTACATCGGTGGCGGTTGC
TACGACTGTAATCCACCCGGAGGCCAAGGACCTGGAGTCTACACAGGTGG
CAACGGAGGACGAGGAGGAGGAGGTGGATACAACGCAGGCGGAGGCGGTG
GAGGATACTACAACGGCGGCGGAGGTGGAGGAGGTGGCCGTCGTCCAGTA
TATTCGGGCAACTTTGGACCCGGCTATGGTAACGGCGGAGGAGGAGGTGG
AGGAGGCTACGGAGGCGGCGGTGGAGGTGGCTACGATGATGGCGGTCTTA
CGCAGATTATAAGCGGCTGAAAGCTTTCTAGACCAT
BS14836.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:23:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5778-RC | 354 | CG5778-PC | 1..354 | 17..370 | 1770 | 100 | Plus |
| CG5778-RA | 354 | CG5778-PA | 1..354 | 17..370 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:23:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5778-RC | 503 | CG5778-RC | 75..428 | 17..370 | 1770 | 100 | Plus |
| CG5778-RA | 657 | CG5778-RA | 75..428 | 17..370 | 1770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:23:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22085603..22085865 | 370..108 | 1315 | 100 | Minus |
| 3R | 32079331 | 3R | 22086229..22086323 | 111..17 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:23:47 has no hits.
BS14836.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:36 Download gff for
BS14836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5778-RB | 1..354 | 17..370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:56 Download gff for
BS14836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5778-RA | 75..427 | 17..369 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:30 Download gff for
BS14836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5778-RA | 75..427 | 17..369 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:39:44 Download gff for
BS14836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5778-RA | 75..427 | 17..369 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:39 Download gff for
BS14836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5778-RA | 75..427 | 17..369 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:27:39 Download gff for
BS14836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22085604..22085865 | 108..369 | 100 | <- | Minus |
| 3R | 22086233..22086323 | 17..107 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:30 Download gff for
BS14836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17911326..17911587 | 108..369 | 100 | <- | Minus |
| arm_3R | 17911955..17912045 | 17..107 | 100 | | Minus |
BS14836.5prime Sequence
384 bp (384 high quality bases) assembled on 2006-10-13
> BS14836.5prime
GAAGTTATCAGTCGACATGAGAACCTTGACGGCATTTGCGATTATCGCTT
TTTTTGCACTGGCTCTAACGGAGGCGGCTGTTTACATCGGTGGCGGTTGC
TACGACTGTAATCCACCCGGAGGCCAAGGACCTGGAGTCTACACAGGTGG
CAACGGAGGACGAGGAGGAGGAGGTGGATACAACGCAGGCGGAGGCGGTG
GAGGATACTACAACGGCGGCGGAGGTGGAGGAGGTGGCCGTCGTCCAGTA
TATTCGGGCAACTTTGGACCCGGCTATGGTAACGGCGGAGGAGGAGGTGG
AGGAGGCTACGGAGGCGGCGGTGGAGGTGGCTACGATGATGGCGGTCTTA
CGCAGATTATAAGCGGCTGAAAGCTTTCTAGACC
BS14836.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:18:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5778-PA | 354 | CG5778-RA | 1..354 | 17..370 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:53:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5778-RC | 503 | CG5778-RC | 75..428 | 17..370 | 1770 | 100 | Plus |
| CG5778-RA | 657 | CG5778-RA | 75..428 | 17..370 | 1770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:53:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22085603..22085865 | 370..108 | 1315 | 100 | Minus |
| 3R | 32079331 | 3R | 22086229..22086323 | 111..17 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:53:08 has no hits.
BS14836.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:55 Download gff for
BS14836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5778-PA | 1..354 | 17..370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:23:05 Download gff for
BS14836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5778-RA | 67..432 | 9..376 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:35:01 Download gff for
BS14836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5778-RA | 67..432 | 9..376 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:35:01 Download gff for
BS14836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22085599..22085865 | 108..376 | 98 | <- | Minus |
| 3R | 22086233..22086331 | 9..107 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:23:05 Download gff for
BS14836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17911321..17911587 | 108..376 | 98 | <- | Minus |
| arm_3R | 17911955..17912053 | 9..107 | 97 | | Minus |
BS14836.pep Sequence
Translation from 16 to 369
> BS14836.pep
MRTLTAFAIIAFFALALTEAAVYIGGGCYDCNPPGGQGPGVYTGGNGGRG
GGGGYNAGGGGGGYYNGGGGGGGGRRPVYSGNFGPGYGNGGGGGGGGYGG
GGGGGYDDGGLTQIISG*
BS14836.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:02:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5778-PC | 117 | CG5778-PC | 1..117 | 1..117 | 666 | 100 | Plus |
| CG5778-PA | 117 | CG5778-PA | 1..117 | 1..117 | 666 | 100 | Plus |
| CG5172-PD | 172 | CG5172-PD | 1..116 | 1..110 | 228 | 45.6 | Plus |
| CG14191-PA | 193 | CG14191-PA | 25..120 | 25..109 | 225 | 50 | Plus |
| CG11458-PA | 98 | CG11458-PA | 3..97 | 7..110 | 222 | 49 | Plus |
| CG5172-PD | 172 | CG5172-PD | 71..164 | 25..105 | 204 | 52.1 | Plus |
| CG5172-PD | 172 | CG5172-PD | 91..172 | 35..98 | 145 | 43.2 | Plus |
