Clone Sequence Records
BS14840.3prime Sequence
826 bp (803 high quality bases) assembled on 2006-10-13
> BS14840.3prime
ATGGTCTAGAAAGCTTCTAGGAGCCCAGTGGCGACATGCCGATCTGCTGC
GGAGTGGCGCCGAGTTCCAGGTTCTTGAGCAGCATCTGCAGCCACTGCTT
GGTCGACTTGTCCTCTTGCAGGCACAGCGCAAAGGTGCCGTCACGCAGCT
GATCGGGCAGACACTGTCCCAGGGCCTTGCGAGCGCGTGTATTGTCCGAA
AGACGCAGATAGCAGCGCACCACATGCTTCAACAGCCGGGCGCATGGATC
CTTCGCCAGCTGGATGACCATTTTGCCCAGGGTGATGGCCACGTGCGAAA
AGCGTTCGTAGGTCTGGCAGATGTACGACAGACCCGACTCATCGAGCAGG
ATCTTCTGGATGATGAAAGTGGCCACAGTCTTGCTCAGCTCCGATCCGCT
GTCCATGATGCTCAGACAAAGGGGCACGATCTCGGTGGTCAGCAGAAAGG
TGATCACCTCCTGTTCGTCGGTCTTGACCAGAGCACCAATCACGCCCAAA
CTGGTCAGGCGCAAGTACTCGAAGGGCCTGGTCTTGGACGTGGTCGACAA
GAAAGGGTACAAGTACAGCGGTATCTGGGCCTGCAGGAAGGCCGTGCGAG
TCTCCGGGTGCGAGGCGACGCACTGCAGCAGCGCCAGGGCGTTGCACACG
CGGTTCGACTGGTGGGCCGTCAAAGTGGGCGGCGTTATCGATGGGTAGAT
GTTAACAATCTCCTGCAACAGGGCGCAGGCGGTCCCGAAGCTGTTCCACA
GCATGGGGGCCAGGTCCGTCTCACGCTTCTTGCTTAACTCGAGCAGAGCG
GTTTCACGCGTGTCCGGATGGGCCAG
BS14840.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14213-PB | 915 | CG14213-RB | 106..915 | 826..17 | 4025 | 99.8 | Minus |
CG14213-PA | 915 | CG14213-RA | 106..915 | 826..17 | 4025 | 99.8 | Minus |
CG9573-PA | 873 | CG9573-RA | 280..387 | 625..518 | 340 | 92.5 | Minus |
CG9573-PA | 873 | CG9573-RA | 548..644 | 357..261 | 210 | 88.6 | Minus |
CG9573-PA | 873 | CG9573-RA | 802..837 | 103..68 | 180 | 100 | Minus |
CG9573-PA | 873 | CG9573-RA | 137..197 | 768..708 | 155 | 90.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:02:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcd-1-RC | 1725 | CG14213-RC | 640..1449 | 826..17 | 4035 | 99.9 | Minus |
Rcd-1-RA | 1612 | CG14213-RA | 527..1336 | 826..17 | 4035 | 99.9 | Minus |
Rcd-1-RB | 1544 | CG14213-RB | 459..1268 | 826..17 | 4035 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:02:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19639467..19639820 | 826..473 | 1755 | 99.7 | Minus |
2L | 23513712 | 2L | 9013086..9013844 | 68..826 | 1710 | 81.7 | Plus |
X | 23542271 | X | 19639894..19640091 | 474..277 | 990 | 100 | Minus |
X | 23542271 | X | 19640301..19640470 | 186..17 | 850 | 100 | Minus |
X | 23542271 | X | 19640147..19640239 | 278..186 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:02:54 has no hits.
BS14840.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:58 Download gff for
BS14840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14213-PA | 106..915 | 17..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:09 Download gff for
BS14840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcd-1-RB | 459..1268 | 17..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:32 Download gff for
BS14840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcd-1-RB | 459..1268 | 17..826 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:32 Download gff for
BS14840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19639467..19639820 | 473..826 | 99 | -> | Minus |
X | 19639896..19640090 | 278..472 | 100 | -> | Minus |
X | 19640148..19640239 | 186..277 | 100 | -> | Minus |
X | 19640302..19640470 | 17..185 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:09 Download gff for
BS14840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19533500..19533853 | 473..826 | 99 | -> | Minus |
arm_X | 19533929..19534123 | 278..472 | 100 | -> | Minus |
arm_X | 19534181..19534272 | 186..277 | 100 | -> | Minus |
arm_X | 19534335..19534503 | 17..185 | 100 | | Minus |
BS14840.5prime Sequence
829 bp (808 high quality bases) assembled on 2006-10-13
> BS14840.5prime
GAAGTTATCAGTCGACATGAGTGCTCAACCGAGTCCGCATATGAATCCTC
AGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGACCGAGCAGGAGAAG
GTGTACCAGTGGATCAATGAGCTGGCCCATCCGGACACGCGTGAAACCGC
TCTGCTCGAGCTAAGCAAGAAGCGTGAGACGGACCTGGCCCCCATGCTGT
GGAACAGCTTCGGGACCGCCTGCGCCCTGTTGCAGGAGATTGTTAACATC
TACCCATCGATAACGCCGCCCACTTTGACGGCCCACCAGTCGAACCGCGT
GTGCAACGCCCTGGCGCTGCTGCAGTGCGTCGCCTCGCACCCGGAGACTC
GCACGGCCTTCCTGCAGGCCCAGATACCGCTGTACTTGTACCCTTTCTTG
TCGACCACGTCCAAGACCAGGCCCTTCGAGTACTTGCGCCTGACCAGTTT
GGGCGTGATTGGTGCTCTGGTCAAGACCGACGAACAGGAGGTGATCACCT
TTCTGCTGACCACCGAGATCGTGCCCCTTTGTCTGAGCATCATGGACAGC
GGATCGGAGCTGAGCAAGACTGTGGCCACTTTCATCATCCAGAAGATCCT
GCTCGATGAGTCGGGTCTGTCGTACATCTGCCAGACCTACGAACGCTTTT
CGCACGTGGCCATCACCCTGGGCAAAATGGTCATCCAGCTGGCGAAGGAT
CCATGCGCCCGGCTGTTGAAGCATGTGGTGCGCTGCTATCTGCGTCTTTC
GGACAATACACGCGCTCGCAAGGCCCTGGGACAGTGTCTGCCCGATCAGC
TGCGTGACGGCACCTTTGCGCTGTGCCTG
BS14840.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14213-PB | 915 | CG14213-RB | 1..813 | 17..829 | 4065 | 100 | Plus |
CG14213-PA | 915 | CG14213-RA | 1..813 | 17..829 | 4065 | 100 | Plus |
CG9573-PA | 873 | CG9573-RA | 280..387 | 323..430 | 340 | 92.5 | Plus |
CG9573-PA | 873 | CG9573-RA | 548..644 | 591..687 | 210 | 88.6 | Plus |
CG9573-PA | 873 | CG9573-RA | 34..128 | 77..171 | 175 | 87.3 | Plus |
CG9573-PA | 873 | CG9573-RA | 137..197 | 180..240 | 155 | 90.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcd-1-RA | 1612 | CG14213-RA | 422..1234 | 17..829 | 4065 | 100 | Plus |
Rcd-1-RB | 1544 | CG14213-RB | 354..1166 | 17..829 | 4065 | 100 | Plus |
Rcd-1-RC | 1725 | CG14213-RC | 544..1347 | 17..829 | 3920 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19639444..19639820 | 99..475 | 1885 | 100 | Plus |
2L | 23513712 | 2L | 9013150..9013889 | 816..77 | 1735 | 82.3 | Minus |
X | 23542271 | X | 19639894..19640091 | 474..671 | 990 | 100 | Plus |
X | 23542271 | X | 19640147..19640239 | 670..762 | 465 | 100 | Plus |
X | 23542271 | X | 19639310..19639395 | 17..102 | 430 | 100 | Plus |
X | 23542271 | X | 19640301..19640368 | 762..829 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:07:11 has no hits.
BS14840.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:59 Download gff for
BS14840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14213-PA | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:51 Download gff for
BS14840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcd-1-RB | 350..1166 | 9..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:15:58 Download gff for
BS14840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcd-1-RB | 350..1166 | 9..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:15:58 Download gff for
BS14840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19639315..19639393 | 22..100 | 100 | -> | Plus |
X | 19639446..19639820 | 101..475 | 100 | -> | Plus |
X | 19639896..19640090 | 476..670 | 100 | -> | Plus |
X | 19640148..19640239 | 671..762 | 100 | -> | Plus |
X | 19640302..19640368 | 763..829 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:51 Download gff for
BS14840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19533348..19533426 | 22..100 | 100 | -> | Plus |
arm_X | 19533479..19533853 | 101..475 | 100 | -> | Plus |
arm_X | 19533929..19534123 | 476..670 | 100 | -> | Plus |
arm_X | 19534181..19534272 | 671..762 | 100 | -> | Plus |
arm_X | 19534335..19534401 | 763..829 | 100 | | Plus |
BS14840.complete Sequence
947 bp assembled on 2006-11-01
GenBank Submission: FJ637800
> BS14840.complete
GAAGTTATCAGTCGACATGAGTGCTCAACCGAGTCCGCATATGAATCCTC
AGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGACCGAGCAGGAGAAG
GTGTACCAGTGGATCAATGAGCTGGCCCATCCGGACACGCGTGAAACCGC
TCTGCTCGAGCTAAGCAAGAAGCGTGAGACGGACCTGGCCCCCATGCTGT
GGAACAGCTTCGGGACCGCCTGCGCCCTGTTGCAGGAGATTGTTAACATC
TACCCATCGATAACGCCGCCCACTTTGACGGCCCACCAGTCGAACCGCGT
GTGCAACGCCCTGGCGCTGCTGCAGTGCGTCGCCTCGCACCCGGAGACTC
GCACGGCCTTCCTGCAGGCCCAGATACCGCTGTACTTGTACCCTTTCTTG
TCGACCACGTCCAAGACCAGGCCCTTCGAGTACTTGCGCCTGACCAGTTT
GGGCGTGATTGGTGCTCTGGTCAAGACCGACGAACAGGAGGTGATCACCT
TTCTGCTGACCACCGAGATCGTGCCCCTTTGTCTGAGCATCATGGACAGC
GGATCGGAGCTGAGCAAGACTGTGGCCACTTTCATCATCCAGAAGATCCT
GCTCGATGAGTCGGGTCTGTCGTACATCTGCCAGACCTACGAACGCTTTT
CGCACGTGGCCATCACCCTGGGCAAAATGGTCATCCAGCTGGCGAAGGAT
CCATGCGCCCGGCTGTTGAAGCATGTGGTGCGCTGCTATCTGCGTCTTTC
GGACAATACACGCGCTCGCAAGGCCCTGGGACAGTGTCTGCCCGATCAGC
TGCGTGACGGCACCTTTGCGCTGTGCCTGCAAGAGGACAAGTCGACCAAG
CAGTGGCTGCAGATGCTGCTCAAGAACCTGGAACTCGGCGCCACTCCGCA
GCAGATCGGCATGTCGCCACTGGGCTCCTAGAAGCTTTCTAGACCAT
BS14840.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:13:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcd-1-RA | 915 | CG14213-PA | 1..915 | 17..931 | 4575 | 100 | Plus |
Rcd-1-RB | 915 | CG14213-PB | 1..915 | 17..931 | 4575 | 100 | Plus |
Rcd-1-RC | 906 | CG14213-PC | 1..906 | 17..931 | 4405 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:13:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcd-1-RA | 1612 | CG14213-RA | 422..1336 | 17..931 | 4575 | 100 | Plus |
Rcd-1-RB | 1544 | CG14213-RB | 354..1268 | 17..931 | 4575 | 100 | Plus |
Rcd-1-RC | 1725 | CG14213-RC | 544..1449 | 17..931 | 4405 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:13:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19639444..19639820 | 99..475 | 1885 | 100 | Plus |
2L | 23513712 | 2L | 9013086..9013889 | 880..77 | 1875 | 82.2 | Minus |
X | 23542271 | X | 19639894..19640091 | 474..671 | 990 | 100 | Plus |
X | 23542271 | X | 19640301..19640470 | 762..931 | 850 | 100 | Plus |
X | 23542271 | X | 19640147..19640239 | 670..762 | 465 | 100 | Plus |
X | 23542271 | X | 19639310..19639395 | 17..102 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:13:37 has no hits.
BS14840.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:55 Download gff for
BS14840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14213-RA | 1..915 | 17..931 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:46 Download gff for
BS14840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14213-RA | 418..1336 | 9..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:44 Download gff for
BS14840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcd-1-RB | 354..1268 | 17..931 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:56 Download gff for
BS14840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14213-RA | 418..1336 | 9..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:31 Download gff for
BS14840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rcd-1-RB | 354..1268 | 17..931 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:31 Download gff for
BS14840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19639310..19639393 | 17..100 | 100 | -> | Plus |
X | 19640148..19640239 | 671..762 | 100 | -> | Plus |
X | 19640302..19640470 | 763..931 | 100 | | Plus |
X | 19639446..19639820 | 101..475 | 100 | -> | Plus |
X | 19639896..19640090 | 476..670 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:44 Download gff for
BS14840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19533343..19533426 | 17..100 | 100 | -> | Plus |
arm_X | 19533479..19533853 | 101..475 | 100 | -> | Plus |
arm_X | 19533929..19534123 | 476..670 | 100 | -> | Plus |
arm_X | 19534181..19534272 | 671..762 | 100 | -> | Plus |
arm_X | 19534335..19534503 | 763..931 | 100 | | Plus |
BS14840.pep Sequence
Translation from 16 to 930
> BS14840.pep
MSAQPSPHMNPQQQQQQQQQQQQTEQEKVYQWINELAHPDTRETALLELS
KKRETDLAPMLWNSFGTACALLQEIVNIYPSITPPTLTAHQSNRVCNALA
LLQCVASHPETRTAFLQAQIPLYLYPFLSTTSKTRPFEYLRLTSLGVIGA
LVKTDEQEVITFLLTTEIVPLCLSIMDSGSELSKTVATFIIQKILLDESG
LSYICQTYERFSHVAITLGKMVIQLAKDPCARLLKHVVRCYLRLSDNTRA
RKALGQCLPDQLRDGTFALCLQEDKSTKQWLQMLLKNLELGATPQQIGMS
PLGS*
BS14840.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcd-1-PA | 304 | CG14213-PA | 1..304 | 1..304 | 1563 | 100 | Plus |
Rcd-1-PB | 304 | CG14213-PB | 1..304 | 1..304 | 1563 | 100 | Plus |
Rcd-1-PC | 301 | CG14213-PC | 1..301 | 1..304 | 1533 | 99 | Plus |
Rcd-1r-PA | 290 | CG9573-PA | 1..289 | 1..304 | 976 | 65.5 | Plus |
CG2053-PB | 298 | CG2053-PB | 9..258 | 21..267 | 469 | 40 | Plus |