Clone BS14840 Report

Search the DGRC for BS14840

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:148
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptRcd-1-RA
Protein status:BS14840.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14840.3prime Sequence

826 bp (803 high quality bases) assembled on 2006-10-13

> BS14840.3prime
ATGGTCTAGAAAGCTTCTAGGAGCCCAGTGGCGACATGCCGATCTGCTGC
GGAGTGGCGCCGAGTTCCAGGTTCTTGAGCAGCATCTGCAGCCACTGCTT
GGTCGACTTGTCCTCTTGCAGGCACAGCGCAAAGGTGCCGTCACGCAGCT
GATCGGGCAGACACTGTCCCAGGGCCTTGCGAGCGCGTGTATTGTCCGAA
AGACGCAGATAGCAGCGCACCACATGCTTCAACAGCCGGGCGCATGGATC
CTTCGCCAGCTGGATGACCATTTTGCCCAGGGTGATGGCCACGTGCGAAA
AGCGTTCGTAGGTCTGGCAGATGTACGACAGACCCGACTCATCGAGCAGG
ATCTTCTGGATGATGAAAGTGGCCACAGTCTTGCTCAGCTCCGATCCGCT
GTCCATGATGCTCAGACAAAGGGGCACGATCTCGGTGGTCAGCAGAAAGG
TGATCACCTCCTGTTCGTCGGTCTTGACCAGAGCACCAATCACGCCCAAA
CTGGTCAGGCGCAAGTACTCGAAGGGCCTGGTCTTGGACGTGGTCGACAA
GAAAGGGTACAAGTACAGCGGTATCTGGGCCTGCAGGAAGGCCGTGCGAG
TCTCCGGGTGCGAGGCGACGCACTGCAGCAGCGCCAGGGCGTTGCACACG
CGGTTCGACTGGTGGGCCGTCAAAGTGGGCGGCGTTATCGATGGGTAGAT
GTTAACAATCTCCTGCAACAGGGCGCAGGCGGTCCCGAAGCTGTTCCACA
GCATGGGGGCCAGGTCCGTCTCACGCTTCTTGCTTAACTCGAGCAGAGCG
GTTTCACGCGTGTCCGGATGGGCCAG

BS14840.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG14213-PB 915 CG14213-RB 106..915 826..17 4025 99.8 Minus
CG14213-PA 915 CG14213-RA 106..915 826..17 4025 99.8 Minus
CG9573-PA 873 CG9573-RA 280..387 625..518 340 92.5 Minus
CG9573-PA 873 CG9573-RA 548..644 357..261 210 88.6 Minus
CG9573-PA 873 CG9573-RA 802..837 103..68 180 100 Minus
CG9573-PA 873 CG9573-RA 137..197 768..708 155 90.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:02:55
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd-1-RC 1725 CG14213-RC 640..1449 826..17 4035 99.9 Minus
Rcd-1-RA 1612 CG14213-RA 527..1336 826..17 4035 99.9 Minus
Rcd-1-RB 1544 CG14213-RB 459..1268 826..17 4035 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:02:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19639467..19639820 826..473 1755 99.7 Minus
2L 23513712 2L 9013086..9013844 68..826 1710 81.7 Plus
X 23542271 X 19639894..19640091 474..277 990 100 Minus
X 23542271 X 19640301..19640470 186..17 850 100 Minus
X 23542271 X 19640147..19640239 278..186 465 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:02:54 has no hits.

BS14840.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:58 Download gff for BS14840.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14213-PA 106..915 17..826 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:09 Download gff for BS14840.3prime
Subject Subject Range Query Range Percent Splice Strand
Rcd-1-RB 459..1268 17..826 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:32 Download gff for BS14840.3prime
Subject Subject Range Query Range Percent Splice Strand
Rcd-1-RB 459..1268 17..826 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:32 Download gff for BS14840.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19639467..19639820 473..826 99 -> Minus
X 19639896..19640090 278..472 100 -> Minus
X 19640148..19640239 186..277 100 -> Minus
X 19640302..19640470 17..185 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:09 Download gff for BS14840.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19533500..19533853 473..826 99 -> Minus
arm_X 19533929..19534123 278..472 100 -> Minus
arm_X 19534181..19534272 186..277 100 -> Minus
arm_X 19534335..19534503 17..185 100   Minus

BS14840.5prime Sequence

829 bp (808 high quality bases) assembled on 2006-10-13

> BS14840.5prime
GAAGTTATCAGTCGACATGAGTGCTCAACCGAGTCCGCATATGAATCCTC
AGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGACCGAGCAGGAGAAG
GTGTACCAGTGGATCAATGAGCTGGCCCATCCGGACACGCGTGAAACCGC
TCTGCTCGAGCTAAGCAAGAAGCGTGAGACGGACCTGGCCCCCATGCTGT
GGAACAGCTTCGGGACCGCCTGCGCCCTGTTGCAGGAGATTGTTAACATC
TACCCATCGATAACGCCGCCCACTTTGACGGCCCACCAGTCGAACCGCGT
GTGCAACGCCCTGGCGCTGCTGCAGTGCGTCGCCTCGCACCCGGAGACTC
GCACGGCCTTCCTGCAGGCCCAGATACCGCTGTACTTGTACCCTTTCTTG
TCGACCACGTCCAAGACCAGGCCCTTCGAGTACTTGCGCCTGACCAGTTT
GGGCGTGATTGGTGCTCTGGTCAAGACCGACGAACAGGAGGTGATCACCT
TTCTGCTGACCACCGAGATCGTGCCCCTTTGTCTGAGCATCATGGACAGC
GGATCGGAGCTGAGCAAGACTGTGGCCACTTTCATCATCCAGAAGATCCT
GCTCGATGAGTCGGGTCTGTCGTACATCTGCCAGACCTACGAACGCTTTT
CGCACGTGGCCATCACCCTGGGCAAAATGGTCATCCAGCTGGCGAAGGAT
CCATGCGCCCGGCTGTTGAAGCATGTGGTGCGCTGCTATCTGCGTCTTTC
GGACAATACACGCGCTCGCAAGGCCCTGGGACAGTGTCTGCCCGATCAGC
TGCGTGACGGCACCTTTGCGCTGTGCCTG

BS14840.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG14213-PB 915 CG14213-RB 1..813 17..829 4065 100 Plus
CG14213-PA 915 CG14213-RA 1..813 17..829 4065 100 Plus
CG9573-PA 873 CG9573-RA 280..387 323..430 340 92.5 Plus
CG9573-PA 873 CG9573-RA 548..644 591..687 210 88.6 Plus
CG9573-PA 873 CG9573-RA 34..128 77..171 175 87.3 Plus
CG9573-PA 873 CG9573-RA 137..197 180..240 155 90.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd-1-RA 1612 CG14213-RA 422..1234 17..829 4065 100 Plus
Rcd-1-RB 1544 CG14213-RB 354..1166 17..829 4065 100 Plus
Rcd-1-RC 1725 CG14213-RC 544..1347 17..829 3920 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19639444..19639820 99..475 1885 100 Plus
2L 23513712 2L 9013150..9013889 816..77 1735 82.3 Minus
X 23542271 X 19639894..19640091 474..671 990 100 Plus
X 23542271 X 19640147..19640239 670..762 465 100 Plus
X 23542271 X 19639310..19639395 17..102 430 100 Plus
X 23542271 X 19640301..19640368 762..829 340 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:07:11 has no hits.

BS14840.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:56:59 Download gff for BS14840.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14213-PA 1..813 17..829 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:51 Download gff for BS14840.5prime
Subject Subject Range Query Range Percent Splice Strand
Rcd-1-RB 350..1166 9..829 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:15:58 Download gff for BS14840.5prime
Subject Subject Range Query Range Percent Splice Strand
Rcd-1-RB 350..1166 9..829 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:15:58 Download gff for BS14840.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19639315..19639393 22..100 100 -> Plus
X 19639446..19639820 101..475 100 -> Plus
X 19639896..19640090 476..670 100 -> Plus
X 19640148..19640239 671..762 100 -> Plus
X 19640302..19640368 763..829 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:51 Download gff for BS14840.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19533348..19533426 22..100 100 -> Plus
arm_X 19533479..19533853 101..475 100 -> Plus
arm_X 19533929..19534123 476..670 100 -> Plus
arm_X 19534181..19534272 671..762 100 -> Plus
arm_X 19534335..19534401 763..829 100   Plus

BS14840.complete Sequence

947 bp assembled on 2006-11-01

GenBank Submission: FJ637800

> BS14840.complete
GAAGTTATCAGTCGACATGAGTGCTCAACCGAGTCCGCATATGAATCCTC
AGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGACCGAGCAGGAGAAG
GTGTACCAGTGGATCAATGAGCTGGCCCATCCGGACACGCGTGAAACCGC
TCTGCTCGAGCTAAGCAAGAAGCGTGAGACGGACCTGGCCCCCATGCTGT
GGAACAGCTTCGGGACCGCCTGCGCCCTGTTGCAGGAGATTGTTAACATC
TACCCATCGATAACGCCGCCCACTTTGACGGCCCACCAGTCGAACCGCGT
GTGCAACGCCCTGGCGCTGCTGCAGTGCGTCGCCTCGCACCCGGAGACTC
GCACGGCCTTCCTGCAGGCCCAGATACCGCTGTACTTGTACCCTTTCTTG
TCGACCACGTCCAAGACCAGGCCCTTCGAGTACTTGCGCCTGACCAGTTT
GGGCGTGATTGGTGCTCTGGTCAAGACCGACGAACAGGAGGTGATCACCT
TTCTGCTGACCACCGAGATCGTGCCCCTTTGTCTGAGCATCATGGACAGC
GGATCGGAGCTGAGCAAGACTGTGGCCACTTTCATCATCCAGAAGATCCT
GCTCGATGAGTCGGGTCTGTCGTACATCTGCCAGACCTACGAACGCTTTT
CGCACGTGGCCATCACCCTGGGCAAAATGGTCATCCAGCTGGCGAAGGAT
CCATGCGCCCGGCTGTTGAAGCATGTGGTGCGCTGCTATCTGCGTCTTTC
GGACAATACACGCGCTCGCAAGGCCCTGGGACAGTGTCTGCCCGATCAGC
TGCGTGACGGCACCTTTGCGCTGTGCCTGCAAGAGGACAAGTCGACCAAG
CAGTGGCTGCAGATGCTGCTCAAGAACCTGGAACTCGGCGCCACTCCGCA
GCAGATCGGCATGTCGCCACTGGGCTCCTAGAAGCTTTCTAGACCAT

BS14840.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:13:38
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd-1-RA 915 CG14213-PA 1..915 17..931 4575 100 Plus
Rcd-1-RB 915 CG14213-PB 1..915 17..931 4575 100 Plus
Rcd-1-RC 906 CG14213-PC 1..906 17..931 4405 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:13:40
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd-1-RA 1612 CG14213-RA 422..1336 17..931 4575 100 Plus
Rcd-1-RB 1544 CG14213-RB 354..1268 17..931 4575 100 Plus
Rcd-1-RC 1725 CG14213-RC 544..1449 17..931 4405 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:13:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19639444..19639820 99..475 1885 100 Plus
2L 23513712 2L 9013086..9013889 880..77 1875 82.2 Minus
X 23542271 X 19639894..19640091 474..671 990 100 Plus
X 23542271 X 19640301..19640470 762..931 850 100 Plus
X 23542271 X 19640147..19640239 670..762 465 100 Plus
X 23542271 X 19639310..19639395 17..102 430 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:13:37 has no hits.

BS14840.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:55 Download gff for BS14840.complete
Subject Subject Range Query Range Percent Splice Strand
CG14213-RA 1..915 17..931 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:46 Download gff for BS14840.complete
Subject Subject Range Query Range Percent Splice Strand
CG14213-RA 418..1336 9..931 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:44 Download gff for BS14840.complete
Subject Subject Range Query Range Percent Splice Strand
Rcd-1-RB 354..1268 17..931 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:56 Download gff for BS14840.complete
Subject Subject Range Query Range Percent Splice Strand
CG14213-RA 418..1336 9..931 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:31 Download gff for BS14840.complete
Subject Subject Range Query Range Percent Splice Strand
Rcd-1-RB 354..1268 17..931 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:31 Download gff for BS14840.complete
Subject Subject Range Query Range Percent Splice Strand
X 19639310..19639393 17..100 100 -> Plus
X 19640148..19640239 671..762 100 -> Plus
X 19640302..19640470 763..931 100   Plus
X 19639446..19639820 101..475 100 -> Plus
X 19639896..19640090 476..670 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:44 Download gff for BS14840.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19533343..19533426 17..100 100 -> Plus
arm_X 19533479..19533853 101..475 100 -> Plus
arm_X 19533929..19534123 476..670 100 -> Plus
arm_X 19534181..19534272 671..762 100 -> Plus
arm_X 19534335..19534503 763..931 100   Plus

BS14840.pep Sequence

Translation from 16 to 930

> BS14840.pep
MSAQPSPHMNPQQQQQQQQQQQQTEQEKVYQWINELAHPDTRETALLELS
KKRETDLAPMLWNSFGTACALLQEIVNIYPSITPPTLTAHQSNRVCNALA
LLQCVASHPETRTAFLQAQIPLYLYPFLSTTSKTRPFEYLRLTSLGVIGA
LVKTDEQEVITFLLTTEIVPLCLSIMDSGSELSKTVATFIIQKILLDESG
LSYICQTYERFSHVAITLGKMVIQLAKDPCARLLKHVVRCYLRLSDNTRA
RKALGQCLPDQLRDGTFALCLQEDKSTKQWLQMLLKNLELGATPQQIGMS
PLGS*

BS14840.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:34
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd-1-PA 304 CG14213-PA 1..304 1..304 1563 100 Plus
Rcd-1-PB 304 CG14213-PB 1..304 1..304 1563 100 Plus
Rcd-1-PC 301 CG14213-PC 1..301 1..304 1533 99 Plus
Rcd-1r-PA 290 CG9573-PA 1..289 1..304 976 65.5 Plus
CG2053-PB 298 CG2053-PB 9..258 21..267 469 40 Plus