Clone BS14842 Report

Search the DGRC for BS14842

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:148
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptScp1-RA
Protein status:BS14842.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14842.3prime Sequence

600 bp (600 high quality bases) assembled on 2006-10-13

> BS14842.3prime
ATGGTCTAGAAAGCTTTTATAAGGGCCCAAAGAGATTTACTGCTGGATGA
TTATCGGCTGTGTTTCCCAAAAATTGACCATACAGTTCCTTATAGCGATC
TAGGGAAAGACCGCCACGTTTCCGGTCCTCGTCATTCAACAATGTTTCAA
AGGCTTTATCAATTGGAGTAATATCGTCGATGGCTACTCTAGTTATACAG
TTATAACGGTATTCTTTAACTCCGACTATTCCATCGCTGTCTATGTCAAG
AAGCTTGAAGTTTGATTCAATGAATGCTCTCATTGCCTGTGGAAATTCTT
CGTACTTTTTACCCACACATGTTTTTTTTACAGCATCCTTAAATTCTTGA
TTGGATATTTTGCCATCCTTATCGTCGTCAGCAATAGCAGAGATTTCATC
CCATAAATTTTTCATTAGCTTTTTATAATCATCCAATCGAGCAGTGCTGC
AATCACCTTTTCCTTCTACGACACATGCTCTTACTGCCATGCACAGAAAA
TCATTTTGGTCCAGAAATCCATTGTTGTCGATATCATACATATACCGAAC
GACAAAATCGACACGGTTATCCCAGGAATAAGCCATGTCGACTGATAACT

BS14842.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 11:53:34 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:16:02
Subject Length Description Subject Range Query Range Score Percent Strand
Scp1-RB 1198 CG15848-RB 115..685 586..16 2855 100 Minus
Scp1-RA 984 CG15848-RA 74..644 586..16 2855 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:15:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 2963055..2963223 367..535 845 100 Plus
2R 25286936 2R 2937670..2937825 133..288 780 100 Plus
2R 25286936 2R 2856001..2856156 133..288 750 98.7 Plus
2R 25286936 2R 2853283..2853415 132..264 620 97.7 Plus
2R 25286936 2R 2933167..2933284 16..133 590 100 Plus
2R 25286936 2R 2954996..2955079 286..369 420 100 Plus
2R 25286936 2R 2967095..2967146 535..586 260 100 Plus
Blast to na_te.dros performed on 2015-02-08 12:15:59 has no hits.

BS14842.3prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:19 Download gff for BS14842.3prime
Subject Subject Range Query Range Percent Splice Strand
Scp1-RA 65..653 7..595 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:55 Download gff for BS14842.3prime
Subject Subject Range Query Range Percent Splice Strand
Scp1-RA 65..653 7..595 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:55 Download gff for BS14842.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 2933158..2933284 7..133 96 <- Plus
2R 2937671..2937823 134..286 100 <- Plus
2R 2954997..2955077 287..367 100 <- Plus
2R 2963056..2963222 368..534 100 <- Plus
2R 2967095..2967151 535..595 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:19 Download gff for BS14842.3prime
Subject Subject Range Query Range Percent Splice Strand
2RHet 1708127..1708253 7..133 96 <- Plus
2RHet 1712640..1712792 134..286 100 <- Plus
2RHet 1729966..1730046 287..367 100 <- Plus
2RHet 1738025..1738191 368..534 100 <- Plus
2RHet 1742064..1742120 535..595 93   Plus

BS14842.5prime Sequence

600 bp (600 high quality bases) assembled on 2006-10-13

> BS14842.5prime
GAAGTTATCAGTCGACATGGCTTATTCCTGGGATAACCGTGTCGATTTTG
TCGTTCGGTATATGTATGATATCGACAACAATGGATTTCTGGACCAAAAT
GATTTTCTGTGCATGGCAGTAAGAGCATGTGTCGTAGAAGGAAAAGGTGA
TTGCAGCACTGCTCGATTGGATGATTATAAAAAGCTAATGAAAAATTTAT
GGGATGAAATCTCTGCTATTGCTGACGACGATAAGGATGGCAAAATATCC
AATCAAGAATTTAAGGATGCTGTAAAAAAAACATGTGTGGGTAAAAAGTA
CGAAGAATTTCCACAGGCAATGAGAGCATTCATTGAATCAAACTTCAAGC
TTCTTGACATAGACAGCGATGGAATAGTCGGAGTTAAAGAATACCGTTAT
AACTGTATAACTAGAGTAGCCATCGACGATATTACTCCAATTGATAAAGC
CTTTGAAACATTGTTGAATGACGAGGACCGGAAACGTGGCGGTCTTTCCC
TAGATCGCTATAAGGAACTGTATGGTCAATTTTTGGGAAACACAGCCGAT
AATCATCCAGCAGTAAATCTCTTTGGGCCCTTATAAAAGCTTTCTAGACC

BS14842.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 11:53:35 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
Scp1-RB 1198 CG15848-RB 115..685 17..587 2855 100 Plus
Scp1-RA 984 CG15848-RA 74..644 17..587 2855 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 2963055..2963223 236..68 845 100 Minus
2R 25286936 2R 2937670..2937825 470..315 780 100 Minus
2R 25286936 2R 2856001..2856156 470..315 750 98.7 Minus
2R 25286936 2R 2853283..2853415 471..339 620 97.7 Minus
2R 25286936 2R 2933167..2933284 587..470 590 100 Minus
2R 25286936 2R 2954996..2955079 317..234 420 100 Minus
2R 25286936 2R 2967095..2967146 68..17 260 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:49:38 has no hits.

BS14842.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:14 Download gff for BS14842.5prime
Subject Subject Range Query Range Percent Splice Strand
Scp1-RA 65..653 8..596 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:42 Download gff for BS14842.5prime
Subject Subject Range Query Range Percent Splice Strand
Scp1-RA 65..653 8..596 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:42 Download gff for BS14842.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 2933158..2933284 470..596 96 <- Minus
2R 2937671..2937823 317..469 100 <- Minus
2R 2954997..2955077 236..316 100 <- Minus
2R 2963056..2963222 69..235 100 <- Minus
2R 2967095..2967151 8..68 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:14 Download gff for BS14842.5prime
Subject Subject Range Query Range Percent Splice Strand
2RHet 1738025..1738191 69..235 100 <- Minus
2RHet 1742064..1742120 8..68 93   Minus
2RHet 1708127..1708253 470..596 96 <- Minus
2RHet 1712640..1712792 317..469 100 <- Minus
2RHet 1729966..1730046 236..316 100 <- Minus

BS14842.complete Sequence

602 bp assembled on 2006-11-01

GenBank Submission: FJ637801

> BS14842.complete
GAAGTTATCAGTCGACATGGCTTATTCCTGGGATAACCGTGTCGATTTTG
TCGTTCGGTATATGTATGATATCGACAACAATGGATTTCTGGACCAAAAT
GATTTTCTGTGCATGGCAGTAAGAGCATGTGTCGTAGAAGGAAAAGGTGA
TTGCAGCACTGCTCGATTGGATGATTATAAAAAGCTAATGAAAAATTTAT
GGGATGAAATCTCTGCTATTGCTGACGACGATAAGGATGGCAAAATATCC
AATCAAGAATTTAAGGATGCTGTAAAAAAAACATGTGTGGGTAAAAAGTA
CGAAGAATTTCCACAGGCAATGAGAGCATTCATTGAATCAAACTTCAAGC
TTCTTGACATAGACAGCGATGGAATAGTCGGAGTTAAAGAATACCGTTAT
AACTGTATAACTAGAGTAGCCATCGACGATATTACTCCAATTGATAAAGC
CTTTGAAACATTGTTGAATGACGAGGACCGGAAACGTGGCGGTCTTTCCC
TAGATCGCTATAAGGAACTGTATGGTCAATTTTTGGGAAACACAGCCGAT
AATCATCCAGCAGTAAATCTCTTTGGGCCCTTATAAAAGCTTTCTAGACC
AT

BS14842.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:12:21
Subject Length Description Subject Range Query Range Score Percent Strand
Scp1-RB 570 CG15848-PB 1..570 17..586 2850 100 Plus
Scp1-RA 570 CG15848-PA 1..570 17..586 2850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:12:22
Subject Length Description Subject Range Query Range Score Percent Strand
Scp1-RB 1198 CG15848-RB 115..685 17..587 2855 100 Plus
Scp1-RA 984 CG15848-RA 74..644 17..587 2855 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:12:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 2963055..2963223 236..68 845 100 Minus
2R 25286936 2R 2937670..2937825 470..315 780 100 Minus
2R 25286936 2R 2856001..2856156 470..315 750 98.7 Minus
2R 25286936 2R 2853283..2853415 471..339 620 97.7 Minus
2R 25286936 2R 2933167..2933284 587..470 590 100 Minus
2R 25286936 2R 2954996..2955079 317..234 420 100 Minus
2R 25286936 2R 2967095..2967146 68..17 260 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:12:20 has no hits.

BS14842.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:56 Download gff for BS14842.complete
Subject Subject Range Query Range Percent Splice Strand
Scp1-RA 1..570 17..586 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:39:20 Download gff for BS14842.complete
Subject Subject Range Query Range Percent Splice Strand
Scp1-RA 74..641 17..584 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:14 Download gff for BS14842.complete
Subject Subject Range Query Range Percent Splice Strand
Scp1-RA 74..641 17..584 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:57 Download gff for BS14842.complete
Subject Subject Range Query Range Percent Splice Strand
Scp1-RA 65..653 8..596 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:13:11 Download gff for BS14842.complete
Subject Subject Range Query Range Percent Splice Strand
Scp1-RA 74..641 17..584 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:13:11 Download gff for BS14842.complete
Subject Subject Range Query Range Percent Splice Strand
2R 2963056..2963222 69..235 100 <- Minus
2R 2967095..2967146 17..68 100   Minus
2R 2933170..2933284 470..584 100 <- Minus
2R 2937671..2937823 317..469 100 <- Minus
2R 2954997..2955077 236..316 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:14 Download gff for BS14842.complete
Subject Subject Range Query Range Percent Splice Strand
2RHet 1708139..1708253 470..584 100 <- Minus
2RHet 1712640..1712792 317..469 100 <- Minus
2RHet 1729966..1730046 236..316 100 <- Minus
2RHet 1738025..1738191 69..235 100 <- Minus
2RHet 1742064..1742115 17..68 100   Minus

BS14842.pep Sequence

Translation from 16 to 585

> BS14842.pep
MAYSWDNRVDFVVRYMYDIDNNGFLDQNDFLCMAVRACVVEGKGDCSTAR
LDDYKKLMKNLWDEISAIADDDKDGKISNQEFKDAVKKTCVGKKYEEFPQ
AMRAFIESNFKLLDIDSDGIVGVKEYRYNCITRVAIDDITPIDKAFETLL
NDEDRKRGGLSLDRYKELYGQFLGNTADNHPAVNLFGPL*

BS14842.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
Scp1-PB 189 CG15848-PB 1..189 1..189 1007 100 Plus
Scp1-PA 189 CG15848-PA 1..189 1..189 1007 100 Plus