Clone Sequence Records
BS14842.3prime Sequence
600 bp (600 high quality bases) assembled on 2006-10-13
> BS14842.3prime
ATGGTCTAGAAAGCTTTTATAAGGGCCCAAAGAGATTTACTGCTGGATGA
TTATCGGCTGTGTTTCCCAAAAATTGACCATACAGTTCCTTATAGCGATC
TAGGGAAAGACCGCCACGTTTCCGGTCCTCGTCATTCAACAATGTTTCAA
AGGCTTTATCAATTGGAGTAATATCGTCGATGGCTACTCTAGTTATACAG
TTATAACGGTATTCTTTAACTCCGACTATTCCATCGCTGTCTATGTCAAG
AAGCTTGAAGTTTGATTCAATGAATGCTCTCATTGCCTGTGGAAATTCTT
CGTACTTTTTACCCACACATGTTTTTTTTACAGCATCCTTAAATTCTTGA
TTGGATATTTTGCCATCCTTATCGTCGTCAGCAATAGCAGAGATTTCATC
CCATAAATTTTTCATTAGCTTTTTATAATCATCCAATCGAGCAGTGCTGC
AATCACCTTTTCCTTCTACGACACATGCTCTTACTGCCATGCACAGAAAA
TCATTTTGGTCCAGAAATCCATTGTTGTCGATATCATACATATACCGAAC
GACAAAATCGACACGGTTATCCCAGGAATAAGCCATGTCGACTGATAACT
BS14842.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 11:53:34 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:16:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scp1-RB | 1198 | CG15848-RB | 115..685 | 586..16 | 2855 | 100 | Minus |
Scp1-RA | 984 | CG15848-RA | 74..644 | 586..16 | 2855 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:15:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 2963055..2963223 | 367..535 | 845 | 100 | Plus |
2R | 25286936 | 2R | 2937670..2937825 | 133..288 | 780 | 100 | Plus |
2R | 25286936 | 2R | 2856001..2856156 | 133..288 | 750 | 98.7 | Plus |
2R | 25286936 | 2R | 2853283..2853415 | 132..264 | 620 | 97.7 | Plus |
2R | 25286936 | 2R | 2933167..2933284 | 16..133 | 590 | 100 | Plus |
2R | 25286936 | 2R | 2954996..2955079 | 286..369 | 420 | 100 | Plus |
2R | 25286936 | 2R | 2967095..2967146 | 535..586 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:15:59 has no hits.
BS14842.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:19 Download gff for
BS14842.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scp1-RA | 65..653 | 7..595 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:55 Download gff for
BS14842.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scp1-RA | 65..653 | 7..595 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:55 Download gff for
BS14842.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 2933158..2933284 | 7..133 | 96 | <- | Plus |
2R | 2937671..2937823 | 134..286 | 100 | <- | Plus |
2R | 2954997..2955077 | 287..367 | 100 | <- | Plus |
2R | 2963056..2963222 | 368..534 | 100 | <- | Plus |
2R | 2967095..2967151 | 535..595 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:19 Download gff for
BS14842.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2RHet | 1708127..1708253 | 7..133 | 96 | <- | Plus |
2RHet | 1712640..1712792 | 134..286 | 100 | <- | Plus |
2RHet | 1729966..1730046 | 287..367 | 100 | <- | Plus |
2RHet | 1738025..1738191 | 368..534 | 100 | <- | Plus |
2RHet | 1742064..1742120 | 535..595 | 93 | | Plus |
BS14842.5prime Sequence
600 bp (600 high quality bases) assembled on 2006-10-13
> BS14842.5prime
GAAGTTATCAGTCGACATGGCTTATTCCTGGGATAACCGTGTCGATTTTG
TCGTTCGGTATATGTATGATATCGACAACAATGGATTTCTGGACCAAAAT
GATTTTCTGTGCATGGCAGTAAGAGCATGTGTCGTAGAAGGAAAAGGTGA
TTGCAGCACTGCTCGATTGGATGATTATAAAAAGCTAATGAAAAATTTAT
GGGATGAAATCTCTGCTATTGCTGACGACGATAAGGATGGCAAAATATCC
AATCAAGAATTTAAGGATGCTGTAAAAAAAACATGTGTGGGTAAAAAGTA
CGAAGAATTTCCACAGGCAATGAGAGCATTCATTGAATCAAACTTCAAGC
TTCTTGACATAGACAGCGATGGAATAGTCGGAGTTAAAGAATACCGTTAT
AACTGTATAACTAGAGTAGCCATCGACGATATTACTCCAATTGATAAAGC
CTTTGAAACATTGTTGAATGACGAGGACCGGAAACGTGGCGGTCTTTCCC
TAGATCGCTATAAGGAACTGTATGGTCAATTTTTGGGAAACACAGCCGAT
AATCATCCAGCAGTAAATCTCTTTGGGCCCTTATAAAAGCTTTCTAGACC
BS14842.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 11:53:35 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:49:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scp1-RB | 1198 | CG15848-RB | 115..685 | 17..587 | 2855 | 100 | Plus |
Scp1-RA | 984 | CG15848-RA | 74..644 | 17..587 | 2855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:49:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 2963055..2963223 | 236..68 | 845 | 100 | Minus |
2R | 25286936 | 2R | 2937670..2937825 | 470..315 | 780 | 100 | Minus |
2R | 25286936 | 2R | 2856001..2856156 | 470..315 | 750 | 98.7 | Minus |
2R | 25286936 | 2R | 2853283..2853415 | 471..339 | 620 | 97.7 | Minus |
2R | 25286936 | 2R | 2933167..2933284 | 587..470 | 590 | 100 | Minus |
2R | 25286936 | 2R | 2954996..2955079 | 317..234 | 420 | 100 | Minus |
2R | 25286936 | 2R | 2967095..2967146 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:49:38 has no hits.
BS14842.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:14 Download gff for
BS14842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scp1-RA | 65..653 | 8..596 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:42 Download gff for
BS14842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scp1-RA | 65..653 | 8..596 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:42 Download gff for
BS14842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 2933158..2933284 | 470..596 | 96 | <- | Minus |
2R | 2937671..2937823 | 317..469 | 100 | <- | Minus |
2R | 2954997..2955077 | 236..316 | 100 | <- | Minus |
2R | 2963056..2963222 | 69..235 | 100 | <- | Minus |
2R | 2967095..2967151 | 8..68 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:14 Download gff for
BS14842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2RHet | 1738025..1738191 | 69..235 | 100 | <- | Minus |
2RHet | 1742064..1742120 | 8..68 | 93 | | Minus |
2RHet | 1708127..1708253 | 470..596 | 96 | <- | Minus |
2RHet | 1712640..1712792 | 317..469 | 100 | <- | Minus |
2RHet | 1729966..1730046 | 236..316 | 100 | <- | Minus |
BS14842.complete Sequence
602 bp assembled on 2006-11-01
GenBank Submission: FJ637801
> BS14842.complete
GAAGTTATCAGTCGACATGGCTTATTCCTGGGATAACCGTGTCGATTTTG
TCGTTCGGTATATGTATGATATCGACAACAATGGATTTCTGGACCAAAAT
GATTTTCTGTGCATGGCAGTAAGAGCATGTGTCGTAGAAGGAAAAGGTGA
TTGCAGCACTGCTCGATTGGATGATTATAAAAAGCTAATGAAAAATTTAT
GGGATGAAATCTCTGCTATTGCTGACGACGATAAGGATGGCAAAATATCC
AATCAAGAATTTAAGGATGCTGTAAAAAAAACATGTGTGGGTAAAAAGTA
CGAAGAATTTCCACAGGCAATGAGAGCATTCATTGAATCAAACTTCAAGC
TTCTTGACATAGACAGCGATGGAATAGTCGGAGTTAAAGAATACCGTTAT
AACTGTATAACTAGAGTAGCCATCGACGATATTACTCCAATTGATAAAGC
CTTTGAAACATTGTTGAATGACGAGGACCGGAAACGTGGCGGTCTTTCCC
TAGATCGCTATAAGGAACTGTATGGTCAATTTTTGGGAAACACAGCCGAT
AATCATCCAGCAGTAAATCTCTTTGGGCCCTTATAAAAGCTTTCTAGACC
AT
BS14842.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:12:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scp1-RB | 570 | CG15848-PB | 1..570 | 17..586 | 2850 | 100 | Plus |
Scp1-RA | 570 | CG15848-PA | 1..570 | 17..586 | 2850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:12:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scp1-RB | 1198 | CG15848-RB | 115..685 | 17..587 | 2855 | 100 | Plus |
Scp1-RA | 984 | CG15848-RA | 74..644 | 17..587 | 2855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:12:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 2963055..2963223 | 236..68 | 845 | 100 | Minus |
2R | 25286936 | 2R | 2937670..2937825 | 470..315 | 780 | 100 | Minus |
2R | 25286936 | 2R | 2856001..2856156 | 470..315 | 750 | 98.7 | Minus |
2R | 25286936 | 2R | 2853283..2853415 | 471..339 | 620 | 97.7 | Minus |
2R | 25286936 | 2R | 2933167..2933284 | 587..470 | 590 | 100 | Minus |
2R | 25286936 | 2R | 2954996..2955079 | 317..234 | 420 | 100 | Minus |
2R | 25286936 | 2R | 2967095..2967146 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:12:20 has no hits.
BS14842.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:56 Download gff for
BS14842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scp1-RA | 1..570 | 17..586 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:39:20 Download gff for
BS14842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scp1-RA | 74..641 | 17..584 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:14 Download gff for
BS14842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scp1-RA | 74..641 | 17..584 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:57 Download gff for
BS14842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scp1-RA | 65..653 | 8..596 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:13:11 Download gff for
BS14842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Scp1-RA | 74..641 | 17..584 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:13:11 Download gff for
BS14842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 2963056..2963222 | 69..235 | 100 | <- | Minus |
2R | 2967095..2967146 | 17..68 | 100 | | Minus |
2R | 2933170..2933284 | 470..584 | 100 | <- | Minus |
2R | 2937671..2937823 | 317..469 | 100 | <- | Minus |
2R | 2954997..2955077 | 236..316 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:14 Download gff for
BS14842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2RHet | 1708139..1708253 | 470..584 | 100 | <- | Minus |
2RHet | 1712640..1712792 | 317..469 | 100 | <- | Minus |
2RHet | 1729966..1730046 | 236..316 | 100 | <- | Minus |
2RHet | 1738025..1738191 | 69..235 | 100 | <- | Minus |
2RHet | 1742064..1742115 | 17..68 | 100 | | Minus |
BS14842.pep Sequence
Translation from 16 to 585
> BS14842.pep
MAYSWDNRVDFVVRYMYDIDNNGFLDQNDFLCMAVRACVVEGKGDCSTAR
LDDYKKLMKNLWDEISAIADDDKDGKISNQEFKDAVKKTCVGKKYEEFPQ
AMRAFIESNFKLLDIDSDGIVGVKEYRYNCITRVAIDDITPIDKAFETLL
NDEDRKRGGLSLDRYKELYGQFLGNTADNHPAVNLFGPL*
BS14842.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Scp1-PB | 189 | CG15848-PB | 1..189 | 1..189 | 1007 | 100 | Plus |
Scp1-PA | 189 | CG15848-PA | 1..189 | 1..189 | 1007 | 100 | Plus |