Clone Sequence Records
BS14843.3prime Sequence
827 bp (778 high quality bases) assembled on 2006-10-13
> BS14843.3prime
ATGGTCTAGAAAGCTTTTAGGCTTCCCGGGGCTCGGGCGCCTCGCACTTG
GGGAAGACGCTGCTCTCGTAGGTGGGCACCATGTACTTGATGTTGATGAA
GGCATTGGGGCCTCCGCAGTACTCCAGCAGCTTCAGGGTGTCCTCGATGA
CGTCGCCGATGCGGCAGTTTCGATCGGGATCGATACCCTCTCCCAGATTC
ACGTTGATGTTCTTGTAAAGATTGCACACGGCCAGCAACTGGCGATAGAA
GGGCACCAGGGCCTGACCCACACAGGGACCCAGTCGGACCATCAGTTGTA
TGACTTGGAGGGCGGAGATGATGATCCGCTTGTCGCGCGTCTGGAAGGCC
CGTTTCAGAGGAAGAATGAGCTTGGGCAGCACGGGTAGCACCTTTTTGGG
GGACCGCATGATGAGGTCAATGGCTCCGTTGACCGCTAGCAACCGGGTGT
CGTAGTCCATGTCCGCCAGTCCGTCCACGAAGATGGGCAGATAGTAGCAA
TAGTCGAGATTCTCCGGCACACAGTGCCACTTCACCGGACGCTCCTTGGT
CGGATCCTGTTTGCTGCTCCTGCCGGACATCACACACGGAATGTCGCCGC
GATTGAAGTAGATCTTGAATACGGTCTCCTTCACTGGCTTCCGCTTGAAA
ATGTCGATCTTTGGAGGAGGTTTCACCACAGTATTAGGCTGCAGTGCCTG
AAAAGTGAAGGCGGGAACTTCACGTACTGGCACCTTCGACCTGAGGTACA
ACAACTCCCTGCAAACCCTTCCAGGTTCATGAAGTCGAGTGGCACGTTCG
TTTGTCTTAGTGCACATGTCGACTGAT
BS14843.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17349-PA | 801 | CG17349-RA | 1..801 | 817..17 | 4005 | 100 | Minus |
| CG15120-PA | 927 | CG15120-RA | 869..909 | 105..65 | 180 | 97.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:14:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17349-RA | 1147 | CG17349-RA | 200..1000 | 817..17 | 4005 | 100 | Minus |
| CG15120-RA | 1070 | CG15120-RA | 919..959 | 105..65 | 190 | 97.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:14:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19370926..19371307 | 659..278 | 1910 | 100 | Minus |
| 2L | 23513712 | 2L | 19372301..19372564 | 280..17 | 1320 | 100 | Minus |
| 2L | 23513712 | 2L | 19370644..19370730 | 817..731 | 435 | 100 | Minus |
| 2L | 23513712 | 2L | 19370795..19370867 | 731..659 | 365 | 100 | Minus |
| 2R | 25286936 | 2R | 19500221..19500261 | 105..65 | 190 | 97.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:14:16 has no hits.
BS14843.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:01 Download gff for
BS14843.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17349-PA | 1..801 | 17..817 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:04:25 Download gff for
BS14843.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17349-RA | 200..1006 | 9..817 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:29:40 Download gff for
BS14843.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17349-RA | 200..1006 | 9..817 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:29:40 Download gff for
BS14843.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19370926..19371305 | 280..659 | 100 | -> | Minus |
| 2L | 19372302..19372570 | 9..279 | 98 | | Minus |
| 2L | 19370644..19370730 | 731..817 | 100 | -> | Minus |
| 2L | 19370796..19370866 | 660..730 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:04:25 Download gff for
BS14843.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19370644..19370730 | 731..817 | 100 | -> | Minus |
| arm_2L | 19370796..19370866 | 660..730 | 100 | -> | Minus |
| arm_2L | 19370926..19371305 | 280..659 | 100 | -> | Minus |
| arm_2L | 19372302..19372570 | 9..279 | 98 | | Minus |
BS14843.5prime Sequence
830 bp (751 high quality bases) assembled on 2006-10-13
> BS14843.5prime
GAAGTTATCAGTCGACATGTGCACTAAGACAAACGAACGTGCCACTCGAC
TTCATGAACCTGGAAGGGTTTGCAGGGAGTTGTTGTACCTCAGGTCGAAG
GTGCCAGTACGTGAAGTTCCCGCCTTCACTTTTCAGGCACTGCAGCCTAA
TACTGTGGTGAAACCTCCTCCAAAGATCGACATTTTCAAGCGGAAGCCAG
TGAAGGAGACCGTATTCAAGATCTACTTCAATCGCGGCGACATTCCGTGT
GTGATGTCCGGCAGGAGCAGCAAACAGGATCCGACCAAGGAGCGTCCGGT
GAAGTGGCACTGTGTGCCGGAGAATCTCGACTATTGCTACTATCTGCCCA
TCTTCGTGGACGGACTGGCGGACATGGACTACGACACCCGGTTGCTAGCG
GTCAACGGAGCCATTGACCTCATCATGCGGTCCCCCAAAAAGGTGCTACC
CGTGCTGCCCAAGCTCATTCTTCCTCTGAAACGGGCCTTCCAGACGCGCG
ACAAGCGGATCATCATCTCCGCCCTCCAAGTCATACAACTGATGGTCCGA
CTGGGTCCCTGTGTGGGTCAGGCCCTGGTGCCCTTCTATCGCCAGTTGCT
GGCCGTGTGCAATCTTTACAAGAACATCAACGTGAATCTGGGAGAGGGTA
TCGATCCCGATCGAAACTGCCGCATCGGCGACGTCATCGAGGACACCCTG
AAGCTGCTGGAGTACTGCGGAGGCCCCAATGCCTTCATCAACATCAAGTA
CATGGTGCCCACCTACGAGAGCAGCGTCTTCCCCCAGTGCGAGGCGCCCG
AGCCCCGGGAAGCTAAAAGCTTTCTAGACC
BS14843.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17349-PA | 801 | CG17349-RA | 1..797 | 17..813 | 3960 | 99.8 | Plus |
| CG15120-PA | 927 | CG15120-RA | 869..909 | 729..769 | 180 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:05:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17349-RA | 1147 | CG17349-RA | 200..996 | 17..813 | 3970 | 99.9 | Plus |
| CG15120-RA | 1070 | CG15120-RA | 919..959 | 729..769 | 190 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:05:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19370926..19371307 | 175..556 | 1910 | 100 | Plus |
| 2L | 23513712 | 2L | 19372301..19372560 | 554..813 | 1285 | 99.6 | Plus |
| 2L | 23513712 | 2L | 19370644..19370730 | 17..103 | 435 | 100 | Plus |
| 2L | 23513712 | 2L | 19370795..19370867 | 103..175 | 365 | 100 | Plus |
| 2R | 25286936 | 2R | 19500221..19500261 | 729..769 | 190 | 97.6 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:05:33 has no hits.
BS14843.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:01 Download gff for
BS14843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17349-PA | 1..801 | 17..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:53 Download gff for
BS14843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17349-RA | 200..1006 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:17 Download gff for
BS14843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17349-RA | 200..1006 | 17..824 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:17 Download gff for
BS14843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19370644..19370730 | 17..103 | 100 | -> | Plus |
| 2L | 19370796..19370866 | 104..174 | 100 | -> | Plus |
| 2L | 19370926..19371305 | 175..554 | 100 | -> | Plus |
| 2L | 19372302..19372570 | 555..824 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:53 Download gff for
BS14843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19370796..19370866 | 104..174 | 100 | -> | Plus |
| arm_2L | 19370644..19370730 | 17..103 | 100 | -> | Plus |
| arm_2L | 19370926..19371305 | 175..554 | 100 | -> | Plus |
| arm_2L | 19372302..19372570 | 555..824 | 98 | | Plus |
BS14843.complete Sequence
833 bp assembled on 2006-11-01
GenBank Submission: FJ637802
> BS14843.complete
GAAGTTATCAGTCGACATGTGCACTAAGACAAACGAACGTGCCACTCGAC
TTCATGAACCTGGAAGGGTTTGCAGGGAGTTGTTGTACCTCAGGTCGAAG
GTGCCAGTACGTGAAGTTCCCGCCTTCACTTTTCAGGCACTGCAGCCTAA
TACTGTGGTGAAACCTCCTCCAAAGATCGACATTTTCAAGCGGAAGCCAG
TGAAGGAGACCGTATTCAAGATCTACTTCAATCGCGGCGACATTCCGTGT
GTGATGTCCGGCAGGAGCAGCAAACAGGATCCGACCAAGGAGCGTCCGGT
GAAGTGGCACTGTGTGCCGGAGAATCTCGACTATTGCTACTATCTGCCCA
TCTTCGTGGACGGACTGGCGGACATGGACTACGACACCCGGTTGCTAGCG
GTCAACGGAGCCATTGACCTCATCATGCGGTCCCCCAAAAAGGTGCTACC
CGTGCTGCCCAAGCTCATTCTTCCTCTGAAACGGGCCTTCCAGACGCGCG
ACAAGCGGATCATCATCTCCGCCCTCCAAGTCATACAACTGATGGTCCGA
CTGGGTCCCTGTGTGGGTCAGGCCCTGGTGCCCTTCTATCGCCAGTTGCT
GGCCGTGTGCAATCTTTACAAGAACATCAACGTGAATCTGGGAGAGGGTA
TCGATCCCGATCGAAACTGCCGCATCGGCGACGTCATCGAGGACACCCTG
AAGCTGCTGGAGTACTGCGGAGGCCCCAATGCCTTCATCAACATCAAGTA
CATGGTGCCCACCTACGAGAGCAGCGTCTTCCCCAAGTGCGAGGCGCCCG
AGCCCCGGGAAGCCTAAAAGCTTTCTAGACCAT
BS14843.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:46:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17349-RA | 801 | CG17349-PA | 1..801 | 17..817 | 4005 | 100 | Plus |
| CG15120-RA | 927 | CG15120-PA | 869..909 | 729..769 | 190 | 97.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:46:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17349-RA | 1147 | CG17349-RA | 200..1000 | 17..817 | 4005 | 100 | Plus |
| CG15120-RA | 1070 | CG15120-RA | 919..959 | 729..769 | 190 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:46:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19370926..19371307 | 175..556 | 1910 | 100 | Plus |
| 2L | 23513712 | 2L | 19372301..19372564 | 554..817 | 1320 | 100 | Plus |
| 2L | 23513712 | 2L | 19370644..19370730 | 17..103 | 435 | 100 | Plus |
| 2L | 23513712 | 2L | 19370795..19370867 | 103..175 | 365 | 100 | Plus |
| 2R | 25286936 | 2R | 19500221..19500261 | 729..769 | 190 | 97.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:46:29 has no hits.
BS14843.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:58 Download gff for
BS14843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17349-RA | 1..801 | 17..817 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:49 Download gff for
BS14843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17349-RA | 167..973 | 17..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:29 Download gff for
BS14843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17349-RA | 200..998 | 17..815 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:58 Download gff for
BS14843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17349-RA | 167..973 | 17..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:23 Download gff for
BS14843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17349-RA | 200..998 | 17..815 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:23 Download gff for
BS14843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19370644..19370730 | 17..103 | 100 | -> | Plus |
| 2L | 19370796..19370866 | 104..174 | 100 | -> | Plus |
| 2L | 19370926..19371305 | 175..554 | 100 | -> | Plus |
| 2L | 19372302..19372562 | 555..815 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:29 Download gff for
BS14843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19370644..19370730 | 17..103 | 100 | -> | Plus |
| arm_2L | 19370796..19370866 | 104..174 | 100 | -> | Plus |
| arm_2L | 19370926..19371305 | 175..554 | 100 | -> | Plus |
| arm_2L | 19372302..19372562 | 555..815 | 100 | | Plus |
BS14843.pep Sequence
Translation from 16 to 816
> BS14843.pep
MCTKTNERATRLHEPGRVCRELLYLRSKVPVREVPAFTFQALQPNTVVKP
PPKIDIFKRKPVKETVFKIYFNRGDIPCVMSGRSSKQDPTKERPVKWHCV
PENLDYCYYLPIFVDGLADMDYDTRLLAVNGAIDLIMRSPKKVLPVLPKL
ILPLKRAFQTRDKRIIISALQVIQLMVRLGPCVGQALVPFYRQLLAVCNL
YKNINVNLGEGIDPDRNCRIGDVIEDTLKLLEYCGGPNAFINIKYMVPTY
ESSVFPKCEAPEPREA*
BS14843.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17349-PA | 266 | CG17349-PA | 1..266 | 1..266 | 1412 | 100 | Plus |
| CG15120-PA | 308 | CG15120-PA | 49..304 | 32..252 | 415 | 38.9 | Plus |
