Clone Sequence Records
BS14844.complete Sequence
1628 bp assembled on 2009-12-07
GenBank Submission: KX800790
> BS14844.complete
GAAGTTATCAGTCGACATGTGGATCGTACTGTGCGCTTTTCTTGCCCTTC
CACTGTTCTTGGTGACCTATTTCGAGCTTGGACTACTGCGGCGAAAGCGA
ATGCTGAACAAATTCCAAGGCCCAAGTATGCTGCCTTTGGTGGGCAATGC
TCATCAGATGGGAAACACTCCCACAGAGATTTTGAACCGGTTTTTTGGCT
GGTGGCATGAGTACGGCAAGGATAACTTTCGTTATTGGATAGGTTACTAC
TCCAATATTATGGTCACTAATCCCAAATACATGGAGTTTATACTTAGCAG
TCAAACTCTGATATCCAAGTCCGATGTATATGATCTTACTCACCCATGGC
TGGGATTGGGCCTCCTCACCAGTACTGGCAGCAAATGGCACAAACACCGG
AAGATGATAACCCCAGCCTTCCACTTCAACATCCTGCAGGACTTTCACGA
GGTCATGAACGAGAACTCCACCAAGTTCATAGATCAGCTGAAGAAGGTGG
CAGACGGAGGCAACATCTTCGATTTCCAGGAAGAGGCACATTATTTGACT
CTGGACGTCATTTGCGATACAGCTATGGGTGTGTCCATCAATGCCATGGA
AAACCGAAGTTCCTCCGTTGTGCAAGCCTTTAAAGATATTACCTACACCA
TTAAGATGAGAGCTTTCAGTCCGTGGAAGCGCAACAAATACCTCTTTCAC
TTTGCTCCTGAATATCCAGAATATAGTAAAACACTGAAAACCCTGCAGGA
CTTTACCAATGAGATAATAGCGAAGAGAATCGAAGTCCGAAAATCAGGGC
TTGAAGTCGGCATTAAGGCTGACGAGTTCTCCCGCAAGAAAATGGCATTT
TTGGACACTCTGCTGTCATCCAAAGTGGATGGACGTCCTCTGACTTCCCA
AGAGCTTTACGAGGAAGTTTCCACCTTTATGTTTGAAGGGCATGACACTA
CTACATCTGGTGTAGGTTTTGCAGTCTACTTACTTTCTCGACATCCAGAT
GAACAGGAAAAATTATTTAACGAGCAGTGCGATGTGATGGGCGCTTCTGG
ACTTGGTCGAGATGCCACGTTTCAGGAGATATCCACAATGAAACATTTGG
ATTTGTTTATAAAGGAGGCGCAACGTCTTTATCCGAGTGTCCCTTTCATT
GGTCGCTTTACTGAGAAGGACTACGTAATTGATGGTGACATTGTGCCGAA
GGGGACTACCTTGAACTTGGGCCTTCTTATGTTGGGATACAATGACCGTG
TTTTTAAGGATCCTCACAAATTCCAGCCCGAACGCTTCGACCGTGAGAAA
CCAGGGCCGTTTGAGTACGTGCCCTTTAGTGCTGGTCCCCGAAATTGCAT
TGGTCAGAAGTTTGCACTGCTGGAGATCAAGACTGTGGTGTCCAAAATCA
TTCGAAATTTCGAGGTGCTGCCAGCTCTGGATGAGCTCGTTTCCAAGGAT
GGCTATATAAGCACAACTCTAGGTCTTCAGCCGGCAGAGAAGAAGAGCCG
TGATGCTCACAACCATAAGTATGATCCAATTTTGTCGGCATCCATGACTC
TGAAGTCCGAAAATGGTCTACATCTACGCATGAAGCAGAGGCTTGTATGC
GATAGTACATGAAAGCTTTCTAGACCAT
BS14844.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:44:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4e1-RA | 1596 | CG2062-PA | 1..1596 | 17..1612 | 7980 | 100 | Plus |
Cyp4e2-RB | 1581 | CG2060-PB | 115..1452 | 131..1468 | 2175 | 77.5 | Plus |
Cyp4e2-RA | 1581 | CG2060-PA | 115..1452 | 131..1468 | 2175 | 77.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4e1-RA | 1772 | CG2062-RA | 53..1649 | 17..1613 | 7985 | 100 | Plus |
Cyp4e2-RB | 1880 | CG2060-RB | 272..1609 | 131..1468 | 2175 | 77.5 | Plus |
Cyp4e2-RA | 1783 | CG2060-RA | 175..1512 | 131..1468 | 2175 | 77.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8449190..8449622 | 1181..1613 | 2165 | 100 | Plus |
2R | 25286936 | 2R | 8448527..8448897 | 637..1007 | 1855 | 100 | Plus |
2R | 25286936 | 2R | 8448101..8448452 | 285..636 | 1760 | 100 | Plus |
2R | 25286936 | 2R | 8445532..8445883 | 285..636 | 950 | 84.7 | Plus |
2R | 25286936 | 2R | 8448959..8449136 | 1004..1181 | 890 | 100 | Plus |
2R | 25286936 | 2R | 8447503..8447662 | 17..176 | 800 | 100 | Plus |
2R | 25286936 | 2R | 8446684..8446893 | 1259..1468 | 585 | 85.2 | Plus |
2R | 25286936 | 2R | 8447930..8448042 | 174..286 | 565 | 100 | Plus |
2L | 23513712 | 2L | 9749185..9749442 | 601..344 | 480 | 79.1 | Minus |
2R | 25286936 | 2R | 8445948..8446312 | 643..1007 | 385 | 73.7 | Plus |
2R | 25286936 | 2R | 8446375..8446538 | 1010..1173 | 310 | 79.3 | Plus |
2L | 23513712 | 2L | 9748760..9748888 | 964..836 | 225 | 78.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:44:50 has no hits.
BS14844.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:41 Download gff for
BS14844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e1-RA | 1..1596 | 17..1612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:59 Download gff for
BS14844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e1-RA | 35..1629 | 17..1611 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:56:34 Download gff for
BS14844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e1-RA | 53..1647 | 17..1611 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:46 Download gff for
BS14844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e1-RA | 35..1629 | 17..1611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:53 Download gff for
BS14844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e1-RA | 53..1647 | 17..1611 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:53 Download gff for
BS14844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8449191..8449620 | 1182..1611 | 100 | | Plus |
2R | 8447503..8447662 | 17..176 | 100 | -> | Plus |
2R | 8447933..8448042 | 177..286 | 100 | -> | Plus |
2R | 8448103..8448452 | 287..636 | 100 | -> | Plus |
2R | 8448527..8448896 | 637..1006 | 100 | -> | Plus |
2R | 8448962..8449136 | 1007..1181 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:56:34 Download gff for
BS14844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4336696..4337125 | 1182..1611 | 100 | | Plus |
arm_2R | 4335008..4335167 | 17..176 | 100 | -> | Plus |
arm_2R | 4335438..4335547 | 177..286 | 100 | -> | Plus |
arm_2R | 4335608..4335957 | 287..636 | 100 | -> | Plus |
arm_2R | 4336032..4336401 | 637..1006 | 100 | -> | Plus |
arm_2R | 4336467..4336641 | 1007..1181 | 100 | -> | Plus |
BS14844.3prime Sequence
851 bp (735 high quality bases) assembled on 2006-10-13
> BS14844.3prime
ATGGTCTAGAAAGCTTTCATGTACTATCGCATACAAGCCTCTGCTTCATG
CGTAGATGTAGACCATTTTCGGACTTCAGAGTCATGGATGCCGACAAAAT
TGGATCATACTTATGGTTGTGAGCATCACGGCTCTTCTTCTCTGCCGGCT
GAAGACCTAGAGTTGTGCTTATATAGCCATCCTTGGAAACGAGCTCATCC
AGAGCTGGCAGCACCTCGAAATTTCGAATGATTTTGGACACCACAGTCTT
GATCTCCAGCAGTGCAAACTTCTGACCAATGCAATTTCGGGGACCAGCAC
TAAAGGGCACGTACTCAAACGGCCCTGGTTTCTCACGGTCGAAGCGTTCG
GGCTGGAATTTGTGAGGATCCTTAAAAACACGGTCATTGTATCCCAACAT
AAGAAGGCCCAAGTTCAAGGTAGTCCCCTTCGGCACAATGTCACCATCAA
TTACGTAGTCCTTCTCAGTAAAGCGACCAATGAAAGGGACACTCGGATAA
AGACGTTGCGCCTCCTTTATAAACAAATCCAAATGTTTCATTGTGGATAT
CTCCTGAAACGTGGCATCTCGACCAAGTCCAGAAGCGCCCATCACATCGC
ACTGCTCGTTAAATAATTTTTCCTGTTCATCTGGATGTCGAGAAAGTAAG
TAGACTGCAAAACCTACACCAGATGTAGTAGTGTCATGCCCTTCAAACAT
AAAGGTGGAAACTTCCTCGTAAAGCTCTTGGGAAGTCAAAGGACGTCCAT
CCACTTTGGATGACAGCAGAGTGTCCAAAAATGCCATTTTCTTGCGGGAG
AACTCGTCAGCCTTAATGCCGACTTCAAGCCCTGATTTTCGGACTTCGAT
T
BS14844.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:19:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2062-PA | 1596 | Cyp4e1-RA | 762..1596 | 851..17 | 4150 | 99.8 | Minus |
CG2060-PA | 1581 | Cyp4e2-RA | 1279..1448 | 334..165 | 350 | 88.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:54:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4e1-RA | 1772 | CG2062-RA | 814..1649 | 851..16 | 4165 | 99.9 | Minus |
Cyp4e2-RB | 1880 | CG2060-RB | 965..1609 | 805..161 | 1215 | 79.2 | Minus |
Cyp4e2-RA | 1783 | CG2060-RA | 868..1512 | 805..161 | 1215 | 79.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:53:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8449190..8449622 | 448..16 | 2165 | 100 | Minus |
2R | 25286936 | 2R | 8448668..8448897 | 851..622 | 1135 | 99.6 | Minus |
2R | 25286936 | 2R | 8448959..8449136 | 625..448 | 890 | 100 | Minus |
2R | 25286936 | 2R | 8446684..8446893 | 370..161 | 585 | 85.2 | Minus |
2R | 25286936 | 2R | 8446129..8446312 | 805..622 | 365 | 79.9 | Minus |
2R | 25286936 | 2R | 8446375..8446538 | 619..456 | 310 | 79.3 | Minus |
2L | 23513712 | 2L | 9748760..9748888 | 665..793 | 210 | 77.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:54:01 has no hits.
BS14844.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:02 Download gff for
BS14844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2062-PA | 762..1596 | 17..851 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:18:55 Download gff for
BS14844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e1-RA | 814..1649 | 16..851 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:29:50 Download gff for
BS14844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e1-RA | 814..1649 | 16..851 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:29:50 Download gff for
BS14844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8448668..8448896 | 623..851 | 99 | -> | Minus |
2R | 8448962..8449136 | 448..622 | 100 | -> | Minus |
2R | 8449191..8449622 | 16..447 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:18:55 Download gff for
BS14844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4336173..4336401 | 623..851 | 99 | -> | Minus |
arm_2R | 4336467..4336641 | 448..622 | 100 | -> | Minus |
arm_2R | 4336696..4337127 | 16..447 | 100 | | Minus |
BS14844.5prime Sequence
771 bp (735 high quality bases) assembled on 2006-10-13
> BS14844.5prime
GAAGTTATCAGTCGACATGTGGATCGTACTGTGCGCTTTTCTTGCCCTTC
CACTGTTCTTGGTGACCTATTTCGAGCTTGGACTACTGCGGCGAAAGCGA
ATGCTGAACAAATTCCAAGGCCCAAGTATGCTGCCTTTGGTGGGCAATGC
TCATCAGATGGGAAACACTCCCACAGAGATTTTGAACCGGTTTTTTGGCT
GGTGGCATGAGTACGGCAAGGATAACTTTCGTTATTGGATAGGTTACTAC
TCCAATATTATGGTCACTAATCCCAAATACATGGAGTTTATACTTAGCAG
TCAAACTCTGATATCCAAGTCCGATGTATATGATCTTACTCACCCATGGC
TGGGATTGGGCCTCCTCACCAGTACTGGCAGCAAATGGCACAAACACCGG
AAGATGATAACCCCAGCCTTCCACTTCAACATCCTGCAGGACTTTCACGA
GGTCATGAACGAGAACTCCACCAAGTTCATAGATCAGCTGAAGAAGGTGG
CAGACGGAGGCAACATCTTCGATTTCCAGGAAGAGGCACATTATTTGACT
CTGGACGTCATTTGCGATACAGCTATGGGTGTGTCCATCAATGCCATGGA
AAACCGAAGTTCCTCCGTTGTGCAAGCCTTTAAAGATATTACCTACACCA
TTAAGATGAGAGCTTTCAGTCCGTGGAAGCGCAACAAATACCTCTTTCAC
TTTGCTCCTGAATATCCAGAATATAGTAAAACACTGAAAACCCTGCAGGA
CTTTACCAATGAGATAATAGC
BS14844.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:19:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2062-PA | 1596 | Cyp4e1-RA | 1..755 | 17..771 | 3775 | 100 | Plus |
CG2060-PA | 1581 | Cyp4e2-RA | 325..461 | 341..477 | 460 | 93.4 | Plus |
CG4105-PA | 1581 | Cyp4e3-RA | 367..453 | 383..469 | 285 | 93.1 | Plus |
CG2060-PA | 1581 | Cyp4e2-RA | 526..590 | 542..606 | 225 | 93.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:55:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4e1-RA | 1772 | CG2062-RA | 53..807 | 17..771 | 3775 | 100 | Plus |
Cyp4e2-RB | 1880 | CG2060-RB | 272..906 | 131..765 | 1105 | 78.8 | Plus |
Cyp4e2-RA | 1783 | CG2060-RA | 175..809 | 131..765 | 1105 | 78.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:55:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8448101..8448452 | 285..636 | 1760 | 100 | Plus |
2R | 25286936 | 2R | 8445532..8445883 | 285..636 | 950 | 84.7 | Plus |
2R | 25286936 | 2R | 8447503..8447662 | 17..176 | 800 | 100 | Plus |
2R | 25286936 | 2R | 8448527..8448661 | 637..771 | 675 | 100 | Plus |
2R | 25286936 | 2R | 8447930..8448042 | 174..286 | 565 | 100 | Plus |
2L | 23513712 | 2L | 9749185..9749442 | 601..344 | 480 | 79.1 | Minus |
Blast to na_te.dros performed 2015-02-13 15:55:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tirant | 8526 | Tirant TIRANT 8526bp | 3716..3814 | 670..769 | 127 | 63.7 | Plus |
BS14844.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:02 Download gff for
BS14844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2062-PA | 1..755 | 17..771 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:54:51 Download gff for
BS14844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e1-RA | 45..807 | 9..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:36:22 Download gff for
BS14844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e1-RA | 45..807 | 9..771 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:36:22 Download gff for
BS14844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8447495..8447662 | 9..176 | 98 | -> | Plus |
2R | 8447933..8448042 | 177..286 | 100 | -> | Plus |
2R | 8448103..8448452 | 287..636 | 100 | -> | Plus |
2R | 8448527..8448661 | 637..771 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:54:51 Download gff for
BS14844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4336032..4336166 | 637..771 | 100 | | Plus |
arm_2R | 4335000..4335167 | 9..176 | 98 | -> | Plus |
arm_2R | 4335438..4335547 | 177..286 | 100 | -> | Plus |
arm_2R | 4335608..4335957 | 287..636 | 100 | -> | Plus |
BS14844.pep Sequence
Translation from 16 to 1611
> BS14844.pep
MWIVLCAFLALPLFLVTYFELGLLRRKRMLNKFQGPSMLPLVGNAHQMGN
TPTEILNRFFGWWHEYGKDNFRYWIGYYSNIMVTNPKYMEFILSSQTLIS
KSDVYDLTHPWLGLGLLTSTGSKWHKHRKMITPAFHFNILQDFHEVMNEN
STKFIDQLKKVADGGNIFDFQEEAHYLTLDVICDTAMGVSINAMENRSSS
VVQAFKDITYTIKMRAFSPWKRNKYLFHFAPEYPEYSKTLKTLQDFTNEI
IAKRIEVRKSGLEVGIKADEFSRKKMAFLDTLLSSKVDGRPLTSQELYEE
VSTFMFEGHDTTTSGVGFAVYLLSRHPDEQEKLFNEQCDVMGASGLGRDA
TFQEISTMKHLDLFIKEAQRLYPSVPFIGRFTEKDYVIDGDIVPKGTTLN
LGLLMLGYNDRVFKDPHKFQPERFDREKPGPFEYVPFSAGPRNCIGQKFA
LLEIKTVVSKIIRNFEVLPALDELVSKDGYISTTLGLQPAEKKSRDAHNH
KYDPILSASMTLKSENGLHLRMKQRLVCDST*
BS14844.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:01:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4e1-PA | 531 | CG2062-PA | 1..531 | 1..531 | 2802 | 100 | Plus |
Cyp4e2-PB | 526 | CG2060-PB | 1..525 | 1..525 | 2251 | 80.8 | Plus |
Cyp4e2-PA | 526 | CG2060-PA | 1..525 | 1..525 | 2251 | 80.8 | Plus |
Cyp4e3-PA | 526 | CG4105-PA | 1..524 | 1..525 | 1925 | 67.6 | Plus |
Cyp4d1-PA | 512 | CG3656-PA | 1..479 | 1..467 | 894 | 40.6 | Plus |