Clone BS14844 Report

Search the DGRC for BS14844

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:148
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCyp4e1-RA
Protein status:BS14844.pep: full length peptide match
Sequenced Size:1628

Clone Sequence Records

BS14844.complete Sequence

1628 bp assembled on 2009-12-07

GenBank Submission: KX800790

> BS14844.complete
GAAGTTATCAGTCGACATGTGGATCGTACTGTGCGCTTTTCTTGCCCTTC
CACTGTTCTTGGTGACCTATTTCGAGCTTGGACTACTGCGGCGAAAGCGA
ATGCTGAACAAATTCCAAGGCCCAAGTATGCTGCCTTTGGTGGGCAATGC
TCATCAGATGGGAAACACTCCCACAGAGATTTTGAACCGGTTTTTTGGCT
GGTGGCATGAGTACGGCAAGGATAACTTTCGTTATTGGATAGGTTACTAC
TCCAATATTATGGTCACTAATCCCAAATACATGGAGTTTATACTTAGCAG
TCAAACTCTGATATCCAAGTCCGATGTATATGATCTTACTCACCCATGGC
TGGGATTGGGCCTCCTCACCAGTACTGGCAGCAAATGGCACAAACACCGG
AAGATGATAACCCCAGCCTTCCACTTCAACATCCTGCAGGACTTTCACGA
GGTCATGAACGAGAACTCCACCAAGTTCATAGATCAGCTGAAGAAGGTGG
CAGACGGAGGCAACATCTTCGATTTCCAGGAAGAGGCACATTATTTGACT
CTGGACGTCATTTGCGATACAGCTATGGGTGTGTCCATCAATGCCATGGA
AAACCGAAGTTCCTCCGTTGTGCAAGCCTTTAAAGATATTACCTACACCA
TTAAGATGAGAGCTTTCAGTCCGTGGAAGCGCAACAAATACCTCTTTCAC
TTTGCTCCTGAATATCCAGAATATAGTAAAACACTGAAAACCCTGCAGGA
CTTTACCAATGAGATAATAGCGAAGAGAATCGAAGTCCGAAAATCAGGGC
TTGAAGTCGGCATTAAGGCTGACGAGTTCTCCCGCAAGAAAATGGCATTT
TTGGACACTCTGCTGTCATCCAAAGTGGATGGACGTCCTCTGACTTCCCA
AGAGCTTTACGAGGAAGTTTCCACCTTTATGTTTGAAGGGCATGACACTA
CTACATCTGGTGTAGGTTTTGCAGTCTACTTACTTTCTCGACATCCAGAT
GAACAGGAAAAATTATTTAACGAGCAGTGCGATGTGATGGGCGCTTCTGG
ACTTGGTCGAGATGCCACGTTTCAGGAGATATCCACAATGAAACATTTGG
ATTTGTTTATAAAGGAGGCGCAACGTCTTTATCCGAGTGTCCCTTTCATT
GGTCGCTTTACTGAGAAGGACTACGTAATTGATGGTGACATTGTGCCGAA
GGGGACTACCTTGAACTTGGGCCTTCTTATGTTGGGATACAATGACCGTG
TTTTTAAGGATCCTCACAAATTCCAGCCCGAACGCTTCGACCGTGAGAAA
CCAGGGCCGTTTGAGTACGTGCCCTTTAGTGCTGGTCCCCGAAATTGCAT
TGGTCAGAAGTTTGCACTGCTGGAGATCAAGACTGTGGTGTCCAAAATCA
TTCGAAATTTCGAGGTGCTGCCAGCTCTGGATGAGCTCGTTTCCAAGGAT
GGCTATATAAGCACAACTCTAGGTCTTCAGCCGGCAGAGAAGAAGAGCCG
TGATGCTCACAACCATAAGTATGATCCAATTTTGTCGGCATCCATGACTC
TGAAGTCCGAAAATGGTCTACATCTACGCATGAAGCAGAGGCTTGTATGC
GATAGTACATGAAAGCTTTCTAGACCAT

BS14844.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4e1-RA 1596 CG2062-PA 1..1596 17..1612 7980 100 Plus
Cyp4e2-RB 1581 CG2060-PB 115..1452 131..1468 2175 77.5 Plus
Cyp4e2-RA 1581 CG2060-PA 115..1452 131..1468 2175 77.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:51
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4e1-RA 1772 CG2062-RA 53..1649 17..1613 7985 100 Plus
Cyp4e2-RB 1880 CG2060-RB 272..1609 131..1468 2175 77.5 Plus
Cyp4e2-RA 1783 CG2060-RA 175..1512 131..1468 2175 77.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8449190..8449622 1181..1613 2165 100 Plus
2R 25286936 2R 8448527..8448897 637..1007 1855 100 Plus
2R 25286936 2R 8448101..8448452 285..636 1760 100 Plus
2R 25286936 2R 8445532..8445883 285..636 950 84.7 Plus
2R 25286936 2R 8448959..8449136 1004..1181 890 100 Plus
2R 25286936 2R 8447503..8447662 17..176 800 100 Plus
2R 25286936 2R 8446684..8446893 1259..1468 585 85.2 Plus
2R 25286936 2R 8447930..8448042 174..286 565 100 Plus
2L 23513712 2L 9749185..9749442 601..344 480 79.1 Minus
2R 25286936 2R 8445948..8446312 643..1007 385 73.7 Plus
2R 25286936 2R 8446375..8446538 1010..1173 310 79.3 Plus
2L 23513712 2L 9748760..9748888 964..836 225 78.3 Minus
Blast to na_te.dros performed on 2014-11-28 01:44:50 has no hits.

BS14844.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:41 Download gff for BS14844.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4e1-RA 1..1596 17..1612 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:59 Download gff for BS14844.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4e1-RA 35..1629 17..1611 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:56:34 Download gff for BS14844.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4e1-RA 53..1647 17..1611 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:46 Download gff for BS14844.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4e1-RA 35..1629 17..1611 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:53 Download gff for BS14844.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4e1-RA 53..1647 17..1611 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:53 Download gff for BS14844.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8449191..8449620 1182..1611 100   Plus
2R 8447503..8447662 17..176 100 -> Plus
2R 8447933..8448042 177..286 100 -> Plus
2R 8448103..8448452 287..636 100 -> Plus
2R 8448527..8448896 637..1006 100 -> Plus
2R 8448962..8449136 1007..1181 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:56:34 Download gff for BS14844.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4336696..4337125 1182..1611 100   Plus
arm_2R 4335008..4335167 17..176 100 -> Plus
arm_2R 4335438..4335547 177..286 100 -> Plus
arm_2R 4335608..4335957 287..636 100 -> Plus
arm_2R 4336032..4336401 637..1006 100 -> Plus
arm_2R 4336467..4336641 1007..1181 100 -> Plus

BS14844.3prime Sequence

851 bp (735 high quality bases) assembled on 2006-10-13

> BS14844.3prime
ATGGTCTAGAAAGCTTTCATGTACTATCGCATACAAGCCTCTGCTTCATG
CGTAGATGTAGACCATTTTCGGACTTCAGAGTCATGGATGCCGACAAAAT
TGGATCATACTTATGGTTGTGAGCATCACGGCTCTTCTTCTCTGCCGGCT
GAAGACCTAGAGTTGTGCTTATATAGCCATCCTTGGAAACGAGCTCATCC
AGAGCTGGCAGCACCTCGAAATTTCGAATGATTTTGGACACCACAGTCTT
GATCTCCAGCAGTGCAAACTTCTGACCAATGCAATTTCGGGGACCAGCAC
TAAAGGGCACGTACTCAAACGGCCCTGGTTTCTCACGGTCGAAGCGTTCG
GGCTGGAATTTGTGAGGATCCTTAAAAACACGGTCATTGTATCCCAACAT
AAGAAGGCCCAAGTTCAAGGTAGTCCCCTTCGGCACAATGTCACCATCAA
TTACGTAGTCCTTCTCAGTAAAGCGACCAATGAAAGGGACACTCGGATAA
AGACGTTGCGCCTCCTTTATAAACAAATCCAAATGTTTCATTGTGGATAT
CTCCTGAAACGTGGCATCTCGACCAAGTCCAGAAGCGCCCATCACATCGC
ACTGCTCGTTAAATAATTTTTCCTGTTCATCTGGATGTCGAGAAAGTAAG
TAGACTGCAAAACCTACACCAGATGTAGTAGTGTCATGCCCTTCAAACAT
AAAGGTGGAAACTTCCTCGTAAAGCTCTTGGGAAGTCAAAGGACGTCCAT
CCACTTTGGATGACAGCAGAGTGTCCAAAAATGCCATTTTCTTGCGGGAG
AACTCGTCAGCCTTAATGCCGACTTCAAGCCCTGATTTTCGGACTTCGAT
T

BS14844.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:19:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG2062-PA 1596 Cyp4e1-RA 762..1596 851..17 4150 99.8 Minus
CG2060-PA 1581 Cyp4e2-RA 1279..1448 334..165 350 88.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:54:03
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4e1-RA 1772 CG2062-RA 814..1649 851..16 4165 99.9 Minus
Cyp4e2-RB 1880 CG2060-RB 965..1609 805..161 1215 79.2 Minus
Cyp4e2-RA 1783 CG2060-RA 868..1512 805..161 1215 79.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:53:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8449190..8449622 448..16 2165 100 Minus
2R 25286936 2R 8448668..8448897 851..622 1135 99.6 Minus
2R 25286936 2R 8448959..8449136 625..448 890 100 Minus
2R 25286936 2R 8446684..8446893 370..161 585 85.2 Minus
2R 25286936 2R 8446129..8446312 805..622 365 79.9 Minus
2R 25286936 2R 8446375..8446538 619..456 310 79.3 Minus
2L 23513712 2L 9748760..9748888 665..793 210 77.5 Plus
Blast to na_te.dros performed on 2015-02-12 04:54:01 has no hits.

BS14844.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:02 Download gff for BS14844.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2062-PA 762..1596 17..851 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:18:55 Download gff for BS14844.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4e1-RA 814..1649 16..851 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:29:50 Download gff for BS14844.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4e1-RA 814..1649 16..851 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:29:50 Download gff for BS14844.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8448668..8448896 623..851 99 -> Minus
2R 8448962..8449136 448..622 100 -> Minus
2R 8449191..8449622 16..447 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:18:55 Download gff for BS14844.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4336173..4336401 623..851 99 -> Minus
arm_2R 4336467..4336641 448..622 100 -> Minus
arm_2R 4336696..4337127 16..447 100   Minus

BS14844.5prime Sequence

771 bp (735 high quality bases) assembled on 2006-10-13

> BS14844.5prime
GAAGTTATCAGTCGACATGTGGATCGTACTGTGCGCTTTTCTTGCCCTTC
CACTGTTCTTGGTGACCTATTTCGAGCTTGGACTACTGCGGCGAAAGCGA
ATGCTGAACAAATTCCAAGGCCCAAGTATGCTGCCTTTGGTGGGCAATGC
TCATCAGATGGGAAACACTCCCACAGAGATTTTGAACCGGTTTTTTGGCT
GGTGGCATGAGTACGGCAAGGATAACTTTCGTTATTGGATAGGTTACTAC
TCCAATATTATGGTCACTAATCCCAAATACATGGAGTTTATACTTAGCAG
TCAAACTCTGATATCCAAGTCCGATGTATATGATCTTACTCACCCATGGC
TGGGATTGGGCCTCCTCACCAGTACTGGCAGCAAATGGCACAAACACCGG
AAGATGATAACCCCAGCCTTCCACTTCAACATCCTGCAGGACTTTCACGA
GGTCATGAACGAGAACTCCACCAAGTTCATAGATCAGCTGAAGAAGGTGG
CAGACGGAGGCAACATCTTCGATTTCCAGGAAGAGGCACATTATTTGACT
CTGGACGTCATTTGCGATACAGCTATGGGTGTGTCCATCAATGCCATGGA
AAACCGAAGTTCCTCCGTTGTGCAAGCCTTTAAAGATATTACCTACACCA
TTAAGATGAGAGCTTTCAGTCCGTGGAAGCGCAACAAATACCTCTTTCAC
TTTGCTCCTGAATATCCAGAATATAGTAAAACACTGAAAACCCTGCAGGA
CTTTACCAATGAGATAATAGC

BS14844.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG2062-PA 1596 Cyp4e1-RA 1..755 17..771 3775 100 Plus
CG2060-PA 1581 Cyp4e2-RA 325..461 341..477 460 93.4 Plus
CG4105-PA 1581 Cyp4e3-RA 367..453 383..469 285 93.1 Plus
CG2060-PA 1581 Cyp4e2-RA 526..590 542..606 225 93.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4e1-RA 1772 CG2062-RA 53..807 17..771 3775 100 Plus
Cyp4e2-RB 1880 CG2060-RB 272..906 131..765 1105 78.8 Plus
Cyp4e2-RA 1783 CG2060-RA 175..809 131..765 1105 78.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8448101..8448452 285..636 1760 100 Plus
2R 25286936 2R 8445532..8445883 285..636 950 84.7 Plus
2R 25286936 2R 8447503..8447662 17..176 800 100 Plus
2R 25286936 2R 8448527..8448661 637..771 675 100 Plus
2R 25286936 2R 8447930..8448042 174..286 565 100 Plus
2L 23513712 2L 9749185..9749442 601..344 480 79.1 Minus
Blast to na_te.dros performed 2015-02-13 15:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
Tirant 8526 Tirant TIRANT 8526bp 3716..3814 670..769 127 63.7 Plus

BS14844.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:02 Download gff for BS14844.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2062-PA 1..755 17..771 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:54:51 Download gff for BS14844.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4e1-RA 45..807 9..771 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:36:22 Download gff for BS14844.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4e1-RA 45..807 9..771 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:36:22 Download gff for BS14844.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8447495..8447662 9..176 98 -> Plus
2R 8447933..8448042 177..286 100 -> Plus
2R 8448103..8448452 287..636 100 -> Plus
2R 8448527..8448661 637..771 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:54:51 Download gff for BS14844.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4336032..4336166 637..771 100   Plus
arm_2R 4335000..4335167 9..176 98 -> Plus
arm_2R 4335438..4335547 177..286 100 -> Plus
arm_2R 4335608..4335957 287..636 100 -> Plus

BS14844.pep Sequence

Translation from 16 to 1611

> BS14844.pep
MWIVLCAFLALPLFLVTYFELGLLRRKRMLNKFQGPSMLPLVGNAHQMGN
TPTEILNRFFGWWHEYGKDNFRYWIGYYSNIMVTNPKYMEFILSSQTLIS
KSDVYDLTHPWLGLGLLTSTGSKWHKHRKMITPAFHFNILQDFHEVMNEN
STKFIDQLKKVADGGNIFDFQEEAHYLTLDVICDTAMGVSINAMENRSSS
VVQAFKDITYTIKMRAFSPWKRNKYLFHFAPEYPEYSKTLKTLQDFTNEI
IAKRIEVRKSGLEVGIKADEFSRKKMAFLDTLLSSKVDGRPLTSQELYEE
VSTFMFEGHDTTTSGVGFAVYLLSRHPDEQEKLFNEQCDVMGASGLGRDA
TFQEISTMKHLDLFIKEAQRLYPSVPFIGRFTEKDYVIDGDIVPKGTTLN
LGLLMLGYNDRVFKDPHKFQPERFDREKPGPFEYVPFSAGPRNCIGQKFA
LLEIKTVVSKIIRNFEVLPALDELVSKDGYISTTLGLQPAEKKSRDAHNH
KYDPILSASMTLKSENGLHLRMKQRLVCDST*

BS14844.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:01:37
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4e1-PA 531 CG2062-PA 1..531 1..531 2802 100 Plus
Cyp4e2-PB 526 CG2060-PB 1..525 1..525 2251 80.8 Plus
Cyp4e2-PA 526 CG2060-PA 1..525 1..525 2251 80.8 Plus
Cyp4e3-PA 526 CG4105-PA 1..524 1..525 1925 67.6 Plus
Cyp4d1-PA 512 CG3656-PA 1..479 1..467 894 40.6 Plus