Clone BS14845 Report

Search the DGRC for BS14845

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:148
Well:45
Vector:pDNR-Dual
Associated Gene/Transcriptyellow-f-RA
Protein status:BS14845.pep: full length peptide match
Sequenced Size:1322

Clone Sequence Records

BS14845.complete Sequence

1322 bp assembled on 2009-12-07

GenBank Submission: KX800667

> BS14845.complete
GAAGTTATCAGTCGACATGTTATCTCTGGACGTTCTGCTCCTGTGCGCAA
TCTCAGGGTTCCAATTGCTAATCTCTGCAGATGGAGATCCCATGATTGAG
GTCTTCAAGTGGAAGCAGTTGGACTTTTACAATCGCGGCGATGGCTATAA
GGATTTGTGGAACAGGATCTGCATTCCAGATTCGCATTTCTACAACTCCC
GCAAGTGCTTAGGCTCCTCATCCTCAGGATCCTTCATCCAATACAACAAC
GTGCCCCAAGGAGTAACCCACTTTCGAGGACGCCTCTTTGTCACCGTGCC
ACGGCGACAGCCGGGCATTCCGTCCACCTTAAACTACATCGATCTGGCCA
AGGATGGGTGGAGTCAGAGTCCCCATCTACGGGCCTATCCCAACTTGGCG
GTGAATCAGTATAATGCGAGCGAGCAGAACCTAGTGTCTGTCTATAGAAC
CTCAGTGGATGTCTGTGGGCGTCTCTGGTTCGTCGACACCGGAATGCTGG
AGTTTCCCAATAATCGCCAGCAGATTCGACATCCTAGCATTTGGGTGATC
GATTTGGCTAACGATCGCTTATTGAAACGATTTGAGATTCCGCAGAGCAT
AGTGGAGATCGGACGTGGACTAGCCAGCATCACAATCGATGTGGGCGCTC
GGAGGTGCAACGATGCCTATGCCTACATTCCGGATTTGGTCAATCGCAGA
CTGCACGTCTATCACCTGCGAAGCGATAGAATTTGGTCCTTCGAGCACAG
CTTCTTTAACTTTGATCCCCTTTCTGATAATCTCAACATTGGTGGGCAGA
CCTTCCGCTGGGACGACGGGATTTTCTCGGCGACCTTGGGATCATATAAG
CCCGATGGCAGCAGGGATGTCTTCTTCCATCCTATGGCCAGCACGAATGA
GTTTGTGGTTAGCAACAGGGTCTTGCAGCAGGAATTCAATGCAGCACGTT
CTGATCATGGAGACGACTTCCATCTTCTGGGAACTCGTGGTCCGTCCACC
CAGTCCACAATGCATAAATACGATCCGCGGACCGGGGTGATTTTCTTTGC
CGAGGTCCAGAAGAGTGGAGTGGGCTGCTGGAAAACCAGCAAGCCGTTCT
CAACGGAAAACCATGGCTCCGTTTATTCCAATTCATCGGAGATGATTTAT
CCCAGCGATTTGACCATCGACGAGGAGGGATACATTTGGGTGATGTCCAA
CTCCATGCCCATCTTTGTGTACTCCAAGCTGGATGTGGAGAAGTACAATT
TCCGAATCTGGAGGCAGTCGACATTGCTGGCCAAGAGGGGAACAGTTTGT
GAGTGAAAGCTTTCTAGACCAT

BS14845.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:47:46
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-f-RA 1290 CG18550-PA 1..1290 17..1306 6435 99.9 Plus
yellow-f-RB 1257 CG18550-PB 162..1257 211..1306 5480 100 Plus
yellow-f-RC 1242 CG18550-PC 161..1242 225..1306 5410 100 Plus
yellow-f-RB 1257 CG18550-PB 1..163 17..179 800 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:47
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-f-RA 1439 CG18550-RA 57..1346 17..1306 6435 99.9 Plus
yellow-f-RB 1406 CG18550-RB 218..1313 211..1306 5480 100 Plus
yellow-f-RC 1391 CG18550-RC 217..1298 225..1306 5410 100 Plus
yellow-f-RB 1406 CG18550-RB 57..219 17..179 800 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12991744..12992399 1165..510 3280 100 Minus
3R 32079331 3R 12992466..12992797 509..178 1660 100 Minus
3R 32079331 3R 12993667..12994319 1162..510 1030 77.2 Minus
3R 32079331 3R 12992983..12993145 179..17 800 99.4 Minus
3R 32079331 3R 12991542..12991682 1306..1166 705 100 Minus
3R 32079331 3R 12994430..12994695 507..242 505 79.3 Minus
3R 32079331 3R 12993456..12993593 1306..1169 270 79.7 Minus
3R 32079331 3R 12994977..12995073 145..49 245 83.5 Minus
Blast to na_te.dros performed on 2014-11-28 01:47:45 has no hits.

BS14845.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:22 Download gff for BS14845.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-f-RA 62..1345 22..1305 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:58 Download gff for BS14845.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-f-RA 62..1345 22..1305 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:54:54 Download gff for BS14845.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-f-RA 62..1345 22..1305 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:57 Download gff for BS14845.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-f-RA 62..1345 22..1305 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:57 Download gff for BS14845.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12991543..12991682 1166..1305 100 <- Minus
3R 12991744..12992399 510..1165 100 <- Minus
3R 12992466..12992795 180..509 100 <- Minus
3R 12992983..12993140 22..179 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:58 Download gff for BS14845.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8817265..8817404 1166..1305 100 <- Minus
arm_3R 8817466..8818121 510..1165 100 <- Minus
arm_3R 8818188..8818517 180..509 100 <- Minus
arm_3R 8818705..8818862 22..179 99   Minus

BS14845.3prime Sequence

841 bp (750 high quality bases) assembled on 2006-10-13

> BS14845.3prime
ATGGTCTAGAAAGCTTTCACTCACAAACTGTTCCCCTCTTGGCCAGCAAT
GTCGACTGCCTCCAGATTCGGAAATTGTACTTCTCCACATCCAGCTTGGA
GTACACAAAGATGGGCATGGAGTTGGACATCACCCAAATGTATCCCTCCT
CGTCGATGGTCAAATCGCTGGGATAAATCATCTCCGATGAATTGGAATAA
ACGGAGCCATGGTTTTCCGTTGAGAACGGCTTGCTGGTTTTCCAGCAGCC
CACTCCACTCTTCTGGACCTCGGCAAAGAAAATCACCCCGGTCCGCGGAT
CGTATTTATGCATTGTGGACTGGGTGGACGGACCACGAGTTCCCAGAAGA
TGGAAGTCGTCTCCATGATCAGAACGTGCTGCATTGAATTCCTGCTGCAA
GACCCTGTTGCTAACCACAAACTCATTCGTGCTGGCCATAGGATGGAAGA
AGACATCCCTGCTGCCATCGGGCTTATATGATCCCAAGGTCGCCGAGAAA
ATCCCGTCGTCCCAGCGGAAGGTCTGCCCACCAATGTTGAGATTATCAGA
AAGGGGATCAAAGTTAAAGAAGCTGTGCTCGAAGGACCAAATTCTATCGC
TTCGCAGGTGATAGACGTGCAGTCTGCGATTGACCAAATCCGGAATGTAG
GCATAGGCATCGTTGCACCTCCGAGCGCCCACATCGATTGTGATGCTGGC
TAGTCCACGTCCGATCTCCACTATGCTCTGCGGAATCTCAAATCGTTTCA
ATAAGCGATCGTTAACCAAATCGATCACCCAAATGCTAGGATGTCGAATC
TGCTGGCGAATATTGGGAAACTCCAGCATTCCGGTGTCAAC

BS14845.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:19:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG18550-PA 1290 yellow-f-RA 469..1290 838..17 4060 99.7 Minus
CG8063-PA 1359 yellow-f2-RA 758..802 618..574 175 95.5 Minus
CG8063-PA 1359 yellow-f2-RA 1236..1268 140..108 140 96.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:54:20
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-f-RC 1391 CG18550-RC 477..1298 838..17 4080 99.8 Minus
yellow-f-RB 1406 CG18550-RB 492..1313 838..17 4080 99.8 Minus
yellow-f-RA 1439 CG18550-RA 525..1346 838..17 4080 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:54:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12991744..12992399 158..813 3250 99.7 Plus
3R 32079331 3R 12993667..12994314 161..808 1005 77 Plus
3R 32079331 3R 12991542..12991682 17..157 705 100 Plus
3R 32079331 3R 12993456..12993593 17..154 270 79.7 Plus
Blast to na_te.dros performed on 2015-02-12 04:54:18 has no hits.

BS14845.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:02 Download gff for BS14845.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18550-PA 466..1290 17..841 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:18:56 Download gff for BS14845.3prime
Subject Subject Range Query Range Percent Splice Strand
yellow-f-RA 522..1349 10..841 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:29:54 Download gff for BS14845.3prime
Subject Subject Range Query Range Percent Splice Strand
yellow-f-RA 522..1349 10..841 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:29:54 Download gff for BS14845.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12991539..12991682 10..157 97 <- Plus
3R 12991744..12992399 158..813 99 <- Plus
3R 12992466..12992493 814..841 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:18:56 Download gff for BS14845.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8817261..8817404 10..157 97 <- Plus
arm_3R 8817466..8818121 158..813 99 <- Plus
arm_3R 8818188..8818215 814..841 96   Plus

BS14845.5prime Sequence

810 bp (784 high quality bases) assembled on 2006-10-13

> BS14845.5prime
GAAGTTATCAGTCGACATGTTATCTCTGGACGTTCTGCTCCTGTGCGCAA
TCTCAGGGTTCCAATTGCTAATCTCTGCAGATGGAGATCCCATGATTGAG
GTCTTCAAGTGGAAGCAGTTGGACTTTTACAATCGCGGCGATGGCTATAA
GGATTTGTGGAACAGGATCTGCATTCCAGATTCGCATTTCTACAACTCCC
GCAAGTGCTTAGGCTCCTCATCCTCAGGATCCTTCATCCAATACAACAAC
GTGCCCCAAGGAGTAACCCACTTTCGAGGACGCCTCTTTGTCACCGTGCC
ACGGCGACAGCCGGGCATTCCGTCCACCTTAAACTACATCGATCTGGCCA
AGGATGGGTGGAGTCAGAGTCCCCATCTACGGGCCTATCCCAACTTGGCG
GTGAATCAGTATAATGCGAGCGAGCAGAACCTAGTGTCTGTCTATAGAAC
CTCAGTGGATGTCTGTGGGCGTCTCTGGTTCGTCGACACCGGAATGCTGG
AGTTTCCCAATAATCGCCAGCAGATTCGACATCCTAGCATTTGGGTGATC
GATTTGGCTAACGATCGCTTATTGAAACGATTTGAGATTCCGCAGAGCAT
AGTGGAGATCGGACGTGGACTAGCCAGCATCACAATCGATGTGGGCGCTC
GGAGGTGCAACGATGCCTATGCCTACATTCCGGATTTGGTCAATCGCAGA
CTGCACGTCTATCACCTGCGAAGCGATAGAATTTGGTCCTTCGAGCACAG
CTTCTTTAACTTTGATCCCCTTTCTGATAATCTCAACATTGGTGGGCAGA
CCTTCCGCTG

BS14845.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG18550-PA 1290 yellow-f-RA 1..794 17..810 3945 99.8 Plus
CG8063-PA 1359 yellow-f2-RA 758..802 705..749 175 95.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-f-RA 1439 CG18550-RA 57..850 17..810 3955 99.9 Plus
yellow-f-RB 1406 CG18550-RB 218..817 211..810 3000 100 Plus
yellow-f-RC 1391 CG18550-RC 217..802 225..810 2930 100 Plus
yellow-f-RB 1406 CG18550-RB 57..219 17..179 800 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12992466..12992797 509..178 1660 100 Minus
3R 32079331 3R 12992099..12992399 810..510 1505 100 Minus
3R 32079331 3R 12992983..12993145 179..17 800 99.4 Minus
3R 32079331 3R 12994430..12994695 507..242 505 79.3 Minus
3R 32079331 3R 12994019..12994319 810..510 425 76.1 Minus
3R 32079331 3R 12994977..12995073 145..49 245 83.5 Minus
Blast to na_te.dros performed on 2015-02-10 15:39:04 has no hits.

BS14845.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:03 Download gff for BS14845.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18550-PA 1..794 17..810 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:41:20 Download gff for BS14845.5prime
Subject Subject Range Query Range Percent Splice Strand
yellow-f-RA 57..850 17..810 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:14:40 Download gff for BS14845.5prime
Subject Subject Range Query Range Percent Splice Strand
yellow-f-RA 57..850 17..810 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:14:40 Download gff for BS14845.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12992099..12992399 510..810 100 <- Minus
3R 12992466..12992795 180..509 100 <- Minus
3R 12992983..12993145 17..179 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:41:20 Download gff for BS14845.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8817821..8818121 510..810 100 <- Minus
arm_3R 8818188..8818517 180..509 100 <- Minus
arm_3R 8818705..8818867 17..179 99   Minus

BS14845.pep Sequence

Translation from 16 to 1305

> BS14845.pep
MLSLDVLLLCAISGFQLLISADGDPMIEVFKWKQLDFYNRGDGYKDLWNR
ICIPDSHFYNSRKCLGSSSSGSFIQYNNVPQGVTHFRGRLFVTVPRRQPG
IPSTLNYIDLAKDGWSQSPHLRAYPNLAVNQYNASEQNLVSVYRTSVDVC
GRLWFVDTGMLEFPNNRQQIRHPSIWVIDLANDRLLKRFEIPQSIVEIGR
GLASITIDVGARRCNDAYAYIPDLVNRRLHVYHLRSDRIWSFEHSFFNFD
PLSDNLNIGGQTFRWDDGIFSATLGSYKPDGSRDVFFHPMASTNEFVVSN
RVLQQEFNAARSDHGDDFHLLGTRGPSTQSTMHKYDPRTGVIFFAEVQKS
GVGCWKTSKPFSTENHGSVYSNSSEMIYPSDLTIDEEGYIWVMSNSMPIF
VYSKLDVEKYNFRIWRQSTLLAKRGTVCE*

BS14845.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-f-PA 429 CG18550-PA 1..429 1..429 2305 100 Plus
yellow-f-PB 418 CG18550-PB 1..418 1..429 2219 97.4 Plus
yellow-f-PC 413 CG18550-PC 1..413 1..429 2192 96.3 Plus
yellow-f2-PA 452 CG8063-PA 1..452 1..429 1666 69.5 Plus
yellow-c-PB 438 CG4182-PB 6..437 1..429 792 37.6 Plus