Clone Sequence Records
BS14845.complete Sequence
1322 bp assembled on 2009-12-07
GenBank Submission: KX800667
> BS14845.complete
GAAGTTATCAGTCGACATGTTATCTCTGGACGTTCTGCTCCTGTGCGCAA
TCTCAGGGTTCCAATTGCTAATCTCTGCAGATGGAGATCCCATGATTGAG
GTCTTCAAGTGGAAGCAGTTGGACTTTTACAATCGCGGCGATGGCTATAA
GGATTTGTGGAACAGGATCTGCATTCCAGATTCGCATTTCTACAACTCCC
GCAAGTGCTTAGGCTCCTCATCCTCAGGATCCTTCATCCAATACAACAAC
GTGCCCCAAGGAGTAACCCACTTTCGAGGACGCCTCTTTGTCACCGTGCC
ACGGCGACAGCCGGGCATTCCGTCCACCTTAAACTACATCGATCTGGCCA
AGGATGGGTGGAGTCAGAGTCCCCATCTACGGGCCTATCCCAACTTGGCG
GTGAATCAGTATAATGCGAGCGAGCAGAACCTAGTGTCTGTCTATAGAAC
CTCAGTGGATGTCTGTGGGCGTCTCTGGTTCGTCGACACCGGAATGCTGG
AGTTTCCCAATAATCGCCAGCAGATTCGACATCCTAGCATTTGGGTGATC
GATTTGGCTAACGATCGCTTATTGAAACGATTTGAGATTCCGCAGAGCAT
AGTGGAGATCGGACGTGGACTAGCCAGCATCACAATCGATGTGGGCGCTC
GGAGGTGCAACGATGCCTATGCCTACATTCCGGATTTGGTCAATCGCAGA
CTGCACGTCTATCACCTGCGAAGCGATAGAATTTGGTCCTTCGAGCACAG
CTTCTTTAACTTTGATCCCCTTTCTGATAATCTCAACATTGGTGGGCAGA
CCTTCCGCTGGGACGACGGGATTTTCTCGGCGACCTTGGGATCATATAAG
CCCGATGGCAGCAGGGATGTCTTCTTCCATCCTATGGCCAGCACGAATGA
GTTTGTGGTTAGCAACAGGGTCTTGCAGCAGGAATTCAATGCAGCACGTT
CTGATCATGGAGACGACTTCCATCTTCTGGGAACTCGTGGTCCGTCCACC
CAGTCCACAATGCATAAATACGATCCGCGGACCGGGGTGATTTTCTTTGC
CGAGGTCCAGAAGAGTGGAGTGGGCTGCTGGAAAACCAGCAAGCCGTTCT
CAACGGAAAACCATGGCTCCGTTTATTCCAATTCATCGGAGATGATTTAT
CCCAGCGATTTGACCATCGACGAGGAGGGATACATTTGGGTGATGTCCAA
CTCCATGCCCATCTTTGTGTACTCCAAGCTGGATGTGGAGAAGTACAATT
TCCGAATCTGGAGGCAGTCGACATTGCTGGCCAAGAGGGGAACAGTTTGT
GAGTGAAAGCTTTCTAGACCAT
BS14845.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:47:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-f-RA | 1290 | CG18550-PA | 1..1290 | 17..1306 | 6435 | 99.9 | Plus |
yellow-f-RB | 1257 | CG18550-PB | 162..1257 | 211..1306 | 5480 | 100 | Plus |
yellow-f-RC | 1242 | CG18550-PC | 161..1242 | 225..1306 | 5410 | 100 | Plus |
yellow-f-RB | 1257 | CG18550-PB | 1..163 | 17..179 | 800 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-f-RA | 1439 | CG18550-RA | 57..1346 | 17..1306 | 6435 | 99.9 | Plus |
yellow-f-RB | 1406 | CG18550-RB | 218..1313 | 211..1306 | 5480 | 100 | Plus |
yellow-f-RC | 1391 | CG18550-RC | 217..1298 | 225..1306 | 5410 | 100 | Plus |
yellow-f-RB | 1406 | CG18550-RB | 57..219 | 17..179 | 800 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12991744..12992399 | 1165..510 | 3280 | 100 | Minus |
3R | 32079331 | 3R | 12992466..12992797 | 509..178 | 1660 | 100 | Minus |
3R | 32079331 | 3R | 12993667..12994319 | 1162..510 | 1030 | 77.2 | Minus |
3R | 32079331 | 3R | 12992983..12993145 | 179..17 | 800 | 99.4 | Minus |
3R | 32079331 | 3R | 12991542..12991682 | 1306..1166 | 705 | 100 | Minus |
3R | 32079331 | 3R | 12994430..12994695 | 507..242 | 505 | 79.3 | Minus |
3R | 32079331 | 3R | 12993456..12993593 | 1306..1169 | 270 | 79.7 | Minus |
3R | 32079331 | 3R | 12994977..12995073 | 145..49 | 245 | 83.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:47:45 has no hits.
BS14845.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:22 Download gff for
BS14845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-f-RA | 62..1345 | 22..1305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:57:58 Download gff for
BS14845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-f-RA | 62..1345 | 22..1305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:54:54 Download gff for
BS14845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-f-RA | 62..1345 | 22..1305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:57 Download gff for
BS14845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-f-RA | 62..1345 | 22..1305 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:57 Download gff for
BS14845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12991543..12991682 | 1166..1305 | 100 | <- | Minus |
3R | 12991744..12992399 | 510..1165 | 100 | <- | Minus |
3R | 12992466..12992795 | 180..509 | 100 | <- | Minus |
3R | 12992983..12993140 | 22..179 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:57:58 Download gff for
BS14845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8817265..8817404 | 1166..1305 | 100 | <- | Minus |
arm_3R | 8817466..8818121 | 510..1165 | 100 | <- | Minus |
arm_3R | 8818188..8818517 | 180..509 | 100 | <- | Minus |
arm_3R | 8818705..8818862 | 22..179 | 99 | | Minus |
BS14845.3prime Sequence
841 bp (750 high quality bases) assembled on 2006-10-13
> BS14845.3prime
ATGGTCTAGAAAGCTTTCACTCACAAACTGTTCCCCTCTTGGCCAGCAAT
GTCGACTGCCTCCAGATTCGGAAATTGTACTTCTCCACATCCAGCTTGGA
GTACACAAAGATGGGCATGGAGTTGGACATCACCCAAATGTATCCCTCCT
CGTCGATGGTCAAATCGCTGGGATAAATCATCTCCGATGAATTGGAATAA
ACGGAGCCATGGTTTTCCGTTGAGAACGGCTTGCTGGTTTTCCAGCAGCC
CACTCCACTCTTCTGGACCTCGGCAAAGAAAATCACCCCGGTCCGCGGAT
CGTATTTATGCATTGTGGACTGGGTGGACGGACCACGAGTTCCCAGAAGA
TGGAAGTCGTCTCCATGATCAGAACGTGCTGCATTGAATTCCTGCTGCAA
GACCCTGTTGCTAACCACAAACTCATTCGTGCTGGCCATAGGATGGAAGA
AGACATCCCTGCTGCCATCGGGCTTATATGATCCCAAGGTCGCCGAGAAA
ATCCCGTCGTCCCAGCGGAAGGTCTGCCCACCAATGTTGAGATTATCAGA
AAGGGGATCAAAGTTAAAGAAGCTGTGCTCGAAGGACCAAATTCTATCGC
TTCGCAGGTGATAGACGTGCAGTCTGCGATTGACCAAATCCGGAATGTAG
GCATAGGCATCGTTGCACCTCCGAGCGCCCACATCGATTGTGATGCTGGC
TAGTCCACGTCCGATCTCCACTATGCTCTGCGGAATCTCAAATCGTTTCA
ATAAGCGATCGTTAACCAAATCGATCACCCAAATGCTAGGATGTCGAATC
TGCTGGCGAATATTGGGAAACTCCAGCATTCCGGTGTCAAC
BS14845.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:19:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18550-PA | 1290 | yellow-f-RA | 469..1290 | 838..17 | 4060 | 99.7 | Minus |
CG8063-PA | 1359 | yellow-f2-RA | 758..802 | 618..574 | 175 | 95.5 | Minus |
CG8063-PA | 1359 | yellow-f2-RA | 1236..1268 | 140..108 | 140 | 96.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:54:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-f-RC | 1391 | CG18550-RC | 477..1298 | 838..17 | 4080 | 99.8 | Minus |
yellow-f-RB | 1406 | CG18550-RB | 492..1313 | 838..17 | 4080 | 99.8 | Minus |
yellow-f-RA | 1439 | CG18550-RA | 525..1346 | 838..17 | 4080 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:54:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12991744..12992399 | 158..813 | 3250 | 99.7 | Plus |
3R | 32079331 | 3R | 12993667..12994314 | 161..808 | 1005 | 77 | Plus |
3R | 32079331 | 3R | 12991542..12991682 | 17..157 | 705 | 100 | Plus |
3R | 32079331 | 3R | 12993456..12993593 | 17..154 | 270 | 79.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:54:18 has no hits.
BS14845.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:02 Download gff for
BS14845.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18550-PA | 466..1290 | 17..841 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:18:56 Download gff for
BS14845.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-f-RA | 522..1349 | 10..841 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:29:54 Download gff for
BS14845.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-f-RA | 522..1349 | 10..841 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:29:54 Download gff for
BS14845.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12991539..12991682 | 10..157 | 97 | <- | Plus |
3R | 12991744..12992399 | 158..813 | 99 | <- | Plus |
3R | 12992466..12992493 | 814..841 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:18:56 Download gff for
BS14845.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8817261..8817404 | 10..157 | 97 | <- | Plus |
arm_3R | 8817466..8818121 | 158..813 | 99 | <- | Plus |
arm_3R | 8818188..8818215 | 814..841 | 96 | | Plus |
BS14845.5prime Sequence
810 bp (784 high quality bases) assembled on 2006-10-13
> BS14845.5prime
GAAGTTATCAGTCGACATGTTATCTCTGGACGTTCTGCTCCTGTGCGCAA
TCTCAGGGTTCCAATTGCTAATCTCTGCAGATGGAGATCCCATGATTGAG
GTCTTCAAGTGGAAGCAGTTGGACTTTTACAATCGCGGCGATGGCTATAA
GGATTTGTGGAACAGGATCTGCATTCCAGATTCGCATTTCTACAACTCCC
GCAAGTGCTTAGGCTCCTCATCCTCAGGATCCTTCATCCAATACAACAAC
GTGCCCCAAGGAGTAACCCACTTTCGAGGACGCCTCTTTGTCACCGTGCC
ACGGCGACAGCCGGGCATTCCGTCCACCTTAAACTACATCGATCTGGCCA
AGGATGGGTGGAGTCAGAGTCCCCATCTACGGGCCTATCCCAACTTGGCG
GTGAATCAGTATAATGCGAGCGAGCAGAACCTAGTGTCTGTCTATAGAAC
CTCAGTGGATGTCTGTGGGCGTCTCTGGTTCGTCGACACCGGAATGCTGG
AGTTTCCCAATAATCGCCAGCAGATTCGACATCCTAGCATTTGGGTGATC
GATTTGGCTAACGATCGCTTATTGAAACGATTTGAGATTCCGCAGAGCAT
AGTGGAGATCGGACGTGGACTAGCCAGCATCACAATCGATGTGGGCGCTC
GGAGGTGCAACGATGCCTATGCCTACATTCCGGATTTGGTCAATCGCAGA
CTGCACGTCTATCACCTGCGAAGCGATAGAATTTGGTCCTTCGAGCACAG
CTTCTTTAACTTTGATCCCCTTTCTGATAATCTCAACATTGGTGGGCAGA
CCTTCCGCTG
BS14845.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:19:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18550-PA | 1290 | yellow-f-RA | 1..794 | 17..810 | 3945 | 99.8 | Plus |
CG8063-PA | 1359 | yellow-f2-RA | 758..802 | 705..749 | 175 | 95.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:39:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-f-RA | 1439 | CG18550-RA | 57..850 | 17..810 | 3955 | 99.9 | Plus |
yellow-f-RB | 1406 | CG18550-RB | 218..817 | 211..810 | 3000 | 100 | Plus |
yellow-f-RC | 1391 | CG18550-RC | 217..802 | 225..810 | 2930 | 100 | Plus |
yellow-f-RB | 1406 | CG18550-RB | 57..219 | 17..179 | 800 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:39:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12992466..12992797 | 509..178 | 1660 | 100 | Minus |
3R | 32079331 | 3R | 12992099..12992399 | 810..510 | 1505 | 100 | Minus |
3R | 32079331 | 3R | 12992983..12993145 | 179..17 | 800 | 99.4 | Minus |
3R | 32079331 | 3R | 12994430..12994695 | 507..242 | 505 | 79.3 | Minus |
3R | 32079331 | 3R | 12994019..12994319 | 810..510 | 425 | 76.1 | Minus |
3R | 32079331 | 3R | 12994977..12995073 | 145..49 | 245 | 83.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:39:04 has no hits.
BS14845.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:03 Download gff for
BS14845.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18550-PA | 1..794 | 17..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:41:20 Download gff for
BS14845.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-f-RA | 57..850 | 17..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:14:40 Download gff for
BS14845.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-f-RA | 57..850 | 17..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:14:40 Download gff for
BS14845.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12992099..12992399 | 510..810 | 100 | <- | Minus |
3R | 12992466..12992795 | 180..509 | 100 | <- | Minus |
3R | 12992983..12993145 | 17..179 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:41:20 Download gff for
BS14845.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8817821..8818121 | 510..810 | 100 | <- | Minus |
arm_3R | 8818188..8818517 | 180..509 | 100 | <- | Minus |
arm_3R | 8818705..8818867 | 17..179 | 99 | | Minus |
BS14845.pep Sequence
Translation from 16 to 1305
> BS14845.pep
MLSLDVLLLCAISGFQLLISADGDPMIEVFKWKQLDFYNRGDGYKDLWNR
ICIPDSHFYNSRKCLGSSSSGSFIQYNNVPQGVTHFRGRLFVTVPRRQPG
IPSTLNYIDLAKDGWSQSPHLRAYPNLAVNQYNASEQNLVSVYRTSVDVC
GRLWFVDTGMLEFPNNRQQIRHPSIWVIDLANDRLLKRFEIPQSIVEIGR
GLASITIDVGARRCNDAYAYIPDLVNRRLHVYHLRSDRIWSFEHSFFNFD
PLSDNLNIGGQTFRWDDGIFSATLGSYKPDGSRDVFFHPMASTNEFVVSN
RVLQQEFNAARSDHGDDFHLLGTRGPSTQSTMHKYDPRTGVIFFAEVQKS
GVGCWKTSKPFSTENHGSVYSNSSEMIYPSDLTIDEEGYIWVMSNSMPIF
VYSKLDVEKYNFRIWRQSTLLAKRGTVCE*
BS14845.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:45:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-f-PA | 429 | CG18550-PA | 1..429 | 1..429 | 2305 | 100 | Plus |
yellow-f-PB | 418 | CG18550-PB | 1..418 | 1..429 | 2219 | 97.4 | Plus |
yellow-f-PC | 413 | CG18550-PC | 1..413 | 1..429 | 2192 | 96.3 | Plus |
yellow-f2-PA | 452 | CG8063-PA | 1..452 | 1..429 | 1666 | 69.5 | Plus |
yellow-c-PB | 438 | CG4182-PB | 6..437 | 1..429 | 792 | 37.6 | Plus |