Clone BS14847 Report

Search the DGRC for BS14847

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:148
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG16826-RA
Protein status:BS14847.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14847.3prime Sequence

840 bp (764 high quality bases) assembled on 2006-10-13

> BS14847.3prime
ATGGTCTAGAAAGCTTCTACGAACTTATGGTGGTCGTTTCATTATTAGAG
CTAGAGTCGTCATCGGTGGAAGTCTGCTGCTCCTGGTACTCCGCAATGAT
CTCATCCAGCTTGCGCTCCACGCTGGGCTTCTCCAGCTCGTGCTCGGCCA
GGGTCTGGCCCACACATCCGCTGGCATTCAGGCCGATGGCCAGTAGTCGG
ATGCCTTGAAGCTTCAGGGTGAGCAGCTCCGCGGGAGCCGAGTCGAGTCC
GCGTAGTGCCTCATTGATGCCATTGCGGCAGGACAGGAAGCTGAGGTTGA
ACTGGACGCAGAGCTCGACTTGGTCCGTCAGTTCGTTGGTGGCATTGTGG
TACTTTTCGATGGCCTCTTGGACATTTTGCTCAAACGTGGCTTGCTGCGC
TTGCAACTCCTCCAGGCAGCTGTGCAGATATCCGGAATACCGGGAGAGTA
GCTCATTTATGATCTCCTCGGCTTCCTCGTTGCCAACTCCATTCGTCAGC
TTATCCACTCGTTCCAATTGGGCGTCAGACCATTGGTACCACTTCTTCTG
GATTATGGCGAAATACTCTTGTTTCTTCTCGTCTATCCGATCATTGAGGT
TATTCACGGCCACTTCCAGATCATTTACGACGGTATTGACGGTCTGCAGT
CTGGCGAGAGCATCCTTAAGTGCCTCTCGCTGCAGGATGTTTCTCACCCG
ATCAATCCCCTGATGCAGTGCGTCGATCTGCGCCCTCAGAGTCGCGGAAA
AGTCAACGATTGACTCAGTGGCGGCCTCTATGAACTGCATCTGCGATTTT
TTGGGCAAACTCCAGGGTTTCGTGCGTGTACTGGGCGGAG

BS14847.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG16826-PA 1026 CG16826-RA 268..1026 775..17 3770 99.8 Minus
CG16826-PA 1026 CG16826-RA 204..268 840..776 325 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:05:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG16826-RB 1248 CG16826-RB 228..1050 840..17 4080 99.8 Minus
CG16826-RA 1187 CG16826-RA 228..1050 840..17 4080 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13348000..13348822 840..17 4055 99.8 Minus
Blast to na_te.dros performed on 2015-01-30 18:05:44 has no hits.

BS14847.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:03 Download gff for BS14847.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16826-PA 204..1026 17..840 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:56 Download gff for BS14847.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16826-RA 210..1038 9..840 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:18 Download gff for BS14847.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16826-RA 228..1056 9..840 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:18 Download gff for BS14847.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13348000..13348828 9..840 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:56 Download gff for BS14847.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13348000..13348828 9..840 99   Minus

BS14847.5prime Sequence

867 bp (807 high quality bases) assembled on 2006-10-13

> BS14847.5prime
GAAGTTATCAGTCGACATGCATTCGACCAAGTCAGCCGTTCTCCTGCTCG
CCCTGGCCATCAGCGCCAGCTGCGTTGTTGCCACACCGCATCCGGAATTC
TTGGATGAAATCTTCGGCTCCATAAACCAAACTGGCCAGCACATCATCAG
TGGATTCGTGAATGCCACCAGGAATGGCACGGCCATTGCTGGTGAGTTCC
TGGACAGCATAAGGAACTCCTCCGCCCAGTACACGCACGAAACCCTGGAG
TTTGCCCAAAAAATCGCAGATGCAGTTCATAGAGCCGCCACTGAGTCAAT
CGTCGACTTTTCCGCGACTCTGAGGGCGCAGATCGACGCACTGCATCAGG
GGATTGATCGGGTGAGAAACATCCTGCAGCGAGAGGCACTTAAGGATGCT
CTCGCCAGACTGCAGACCGTCAATACCGTCGTAAATGATCTGGAAGTGGC
CGTGAATAACCTCAATGATCGGATAGACGAGAAGAAACAAGAGTATTTCG
CCATAATCCAGAAGAAGTGGTACCAATGGTCTGACGCCCAATTGGAACGA
GTGGATAAGCTGACGAATGGAGTTGGCAACGAGGAAGCCGAGGAGATCAT
AAATGAGCTACTCTCCCGGTATTCCGGATATCTGCACAGCTGCCTGGAGG
AGTTGCAAGCGCAGCAAGCCACGTTTGAGCAAAATGTCCAAGAGGCCATC
GAAAAGTACCACAATGCCACCAACGAACTGACGGACCAAGTCGAGCTCTG
CGTCCAGTTCAACCTCAGCTTCCTGTCCTGCCGCAATGGCATCAATGAGG
CACTACGCGGACTCGACTCGGCTCCCGCGGAGCTGCTCACCCTGAAGCTT
CAAGGCATCCGACTACT

BS14847.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG16826-PA 1026 CG16826-RA 1..851 17..867 4255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:14:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG16826-RB 1248 CG16826-RB 25..875 17..867 4255 100 Plus
CG16826-RA 1187 CG16826-RA 25..875 17..867 4255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:14:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13347797..13348647 17..867 4255 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:14:21 has no hits.

BS14847.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:04 Download gff for BS14847.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16826-PA 1..851 17..867 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:04:27 Download gff for BS14847.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16826-RA 2..857 13..867 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:29:51 Download gff for BS14847.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16826-RA 20..875 13..867 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:29:51 Download gff for BS14847.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13347792..13348647 13..867 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:04:27 Download gff for BS14847.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13347792..13348647 13..867 99   Plus

BS14847.complete Sequence

1058 bp assembled on 2006-11-01

GenBank Submission: FJ637803

> BS14847.complete
GAAGTTATCAGTCGACATGCATTCGACCAAGTCAGCCGTTCTCCTGCTCG
CCCTGGCCATCAGCGCCAGCTGCGTTGTTGCCACACCGCATCCGGAATTC
TTGGATGAAATCTTCGGCTCCATAAACCAAACTGGCCAGCACATCATCAG
TGGATTCGTGAATGCCACCAGGAATGGCACGGCCATTGCTGGTGAGTTCC
TGGACAGCATAAGGAACTCCTCCGCCCAGTACACGCACGAAACCCTGGAG
TTTGCCCAAAAAATCGCAGATGCAGTTCATAGAGCCGCCACTGAGTCAAT
CGTCGACTTTTCCGCGACTCTGAGGGCGCAGATCGACGCACTGCATCAGG
GGATTGATCGGGTGAGAAACATCCTGCAGCGAGAGGCACTTAAGGATGCT
CTCGCCAGACTGCAGACCGTCAATACCGTCGTAAATGATCTGGAAGTGGC
CGTGAATAACCTCAATGATCGGATAGACGAGAAGAAACAAGAGTATTTCG
CCATAATCCAGAAGAAGTGGTACCAATGGTCTGACGCCCAATTGGAACGA
GTGGATAAGCTGACGAATGGAGTTGGCAACGAGGAAGCCGAGGAGATCAT
AAATGAGCTACTCTCCCGGTATTCCGGATATCTGCACAGCTGCCTGGAGG
AGTTGCAAGCGCAGCAAGCCACGTTTGAGCAAAATGTCCAAGAGGCCATC
GAAAAGTACCACAATGCCACCAACGAACTGACGGACCAAGTCGAGCTCTG
CGTCCAGTTCAACCTCAGCTTCCTGTCCTGCCGCAATGGCATCAATGAGG
CACTACGCGGACTCGACTCGGCTCCCGCGGAGCTGCTCACCCTGAAGCTT
CAAGGCATCCGACTACTGGCCATCGGCCTGAATGCCAGCGGATGTGTGGG
CCAGACCCTGGCCGAGCACGAGCTGGAGAAGCCCAGCGTGGAGCGCAAGC
TGGATGAGATCATTGCGGAGTACCAGGAGCAGCAGACTTCCACCGATGAC
GACTCTAGCTCTAATAATGAAACGACCACCATAAGTTCGTAGAAGCTTTC
TAGACCAT

BS14847.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:44:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG16826-RB 1026 CG16826-PB 1..1026 17..1042 5130 100 Plus
CG16826-RA 1026 CG16826-PA 1..1026 17..1042 5130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:44:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG16826-RB 1248 CG16826-RB 25..1050 17..1042 5130 100 Plus
CG16826-RA 1187 CG16826-RA 25..1050 17..1042 5130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:44:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13347797..13348822 17..1042 5130 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:44:37 has no hits.

BS14847.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:39 Download gff for BS14847.complete
Subject Subject Range Query Range Percent Splice Strand
CG16826-RA 1..1026 17..1042 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:24 Download gff for BS14847.complete
Subject Subject Range Query Range Percent Splice Strand
CG16826-RA 2..1038 13..1050 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:46 Download gff for BS14847.complete
Subject Subject Range Query Range Percent Splice Strand
CG16826-RA 7..1032 17..1042 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:39 Download gff for BS14847.complete
Subject Subject Range Query Range Percent Splice Strand
CG16826-RA 2..1038 13..1050 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:45 Download gff for BS14847.complete
Subject Subject Range Query Range Percent Splice Strand
CG16826-RA 25..1050 17..1042 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:45 Download gff for BS14847.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13347797..13348822 17..1042 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:46 Download gff for BS14847.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13347797..13348822 17..1042 100   Plus

BS14847.pep Sequence

Translation from 16 to 1041

> BS14847.pep
MHSTKSAVLLLALAISASCVVATPHPEFLDEIFGSINQTGQHIISGFVNA
TRNGTAIAGEFLDSIRNSSAQYTHETLEFAQKIADAVHRAATESIVDFSA
TLRAQIDALHQGIDRVRNILQREALKDALARLQTVNTVVNDLEVAVNNLN
DRIDEKKQEYFAIIQKKWYQWSDAQLERVDKLTNGVGNEEAEEIINELLS
RYSGYLHSCLEELQAQQATFEQNVQEAIEKYHNATNELTDQVELCVQFNL
SFLSCRNGINEALRGLDSAPAELLTLKLQGIRLLAIGLNASGCVGQTLAE
HELEKPSVERKLDEIIAEYQEQQTSTDDDSSSNNETTTISS*

BS14847.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG16826-PB 341 CG16826-PB 1..341 1..341 1709 100 Plus
CG16826-PA 341 CG16826-PA 1..341 1..341 1709 100 Plus
CG33109-PA 296 CG33109-PA 86..295 113..326 239 28 Plus