Clone Sequence Records
BS14847.3prime Sequence
840 bp (764 high quality bases) assembled on 2006-10-13
> BS14847.3prime
ATGGTCTAGAAAGCTTCTACGAACTTATGGTGGTCGTTTCATTATTAGAG
CTAGAGTCGTCATCGGTGGAAGTCTGCTGCTCCTGGTACTCCGCAATGAT
CTCATCCAGCTTGCGCTCCACGCTGGGCTTCTCCAGCTCGTGCTCGGCCA
GGGTCTGGCCCACACATCCGCTGGCATTCAGGCCGATGGCCAGTAGTCGG
ATGCCTTGAAGCTTCAGGGTGAGCAGCTCCGCGGGAGCCGAGTCGAGTCC
GCGTAGTGCCTCATTGATGCCATTGCGGCAGGACAGGAAGCTGAGGTTGA
ACTGGACGCAGAGCTCGACTTGGTCCGTCAGTTCGTTGGTGGCATTGTGG
TACTTTTCGATGGCCTCTTGGACATTTTGCTCAAACGTGGCTTGCTGCGC
TTGCAACTCCTCCAGGCAGCTGTGCAGATATCCGGAATACCGGGAGAGTA
GCTCATTTATGATCTCCTCGGCTTCCTCGTTGCCAACTCCATTCGTCAGC
TTATCCACTCGTTCCAATTGGGCGTCAGACCATTGGTACCACTTCTTCTG
GATTATGGCGAAATACTCTTGTTTCTTCTCGTCTATCCGATCATTGAGGT
TATTCACGGCCACTTCCAGATCATTTACGACGGTATTGACGGTCTGCAGT
CTGGCGAGAGCATCCTTAAGTGCCTCTCGCTGCAGGATGTTTCTCACCCG
ATCAATCCCCTGATGCAGTGCGTCGATCTGCGCCCTCAGAGTCGCGGAAA
AGTCAACGATTGACTCAGTGGCGGCCTCTATGAACTGCATCTGCGATTTT
TTGGGCAAACTCCAGGGTTTCGTGCGTGTACTGGGCGGAG
BS14847.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16826-PA | 1026 | CG16826-RA | 268..1026 | 775..17 | 3770 | 99.8 | Minus |
CG16826-PA | 1026 | CG16826-RA | 204..268 | 840..776 | 325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:05:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16826-RB | 1248 | CG16826-RB | 228..1050 | 840..17 | 4080 | 99.8 | Minus |
CG16826-RA | 1187 | CG16826-RA | 228..1050 | 840..17 | 4080 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:05:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13348000..13348822 | 840..17 | 4055 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-01-30 18:05:44 has no hits.
BS14847.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:03 Download gff for
BS14847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16826-PA | 204..1026 | 17..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:56 Download gff for
BS14847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16826-RA | 210..1038 | 9..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:18 Download gff for
BS14847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16826-RA | 228..1056 | 9..840 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:18 Download gff for
BS14847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13348000..13348828 | 9..840 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:56 Download gff for
BS14847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13348000..13348828 | 9..840 | 99 | | Minus |
BS14847.5prime Sequence
867 bp (807 high quality bases) assembled on 2006-10-13
> BS14847.5prime
GAAGTTATCAGTCGACATGCATTCGACCAAGTCAGCCGTTCTCCTGCTCG
CCCTGGCCATCAGCGCCAGCTGCGTTGTTGCCACACCGCATCCGGAATTC
TTGGATGAAATCTTCGGCTCCATAAACCAAACTGGCCAGCACATCATCAG
TGGATTCGTGAATGCCACCAGGAATGGCACGGCCATTGCTGGTGAGTTCC
TGGACAGCATAAGGAACTCCTCCGCCCAGTACACGCACGAAACCCTGGAG
TTTGCCCAAAAAATCGCAGATGCAGTTCATAGAGCCGCCACTGAGTCAAT
CGTCGACTTTTCCGCGACTCTGAGGGCGCAGATCGACGCACTGCATCAGG
GGATTGATCGGGTGAGAAACATCCTGCAGCGAGAGGCACTTAAGGATGCT
CTCGCCAGACTGCAGACCGTCAATACCGTCGTAAATGATCTGGAAGTGGC
CGTGAATAACCTCAATGATCGGATAGACGAGAAGAAACAAGAGTATTTCG
CCATAATCCAGAAGAAGTGGTACCAATGGTCTGACGCCCAATTGGAACGA
GTGGATAAGCTGACGAATGGAGTTGGCAACGAGGAAGCCGAGGAGATCAT
AAATGAGCTACTCTCCCGGTATTCCGGATATCTGCACAGCTGCCTGGAGG
AGTTGCAAGCGCAGCAAGCCACGTTTGAGCAAAATGTCCAAGAGGCCATC
GAAAAGTACCACAATGCCACCAACGAACTGACGGACCAAGTCGAGCTCTG
CGTCCAGTTCAACCTCAGCTTCCTGTCCTGCCGCAATGGCATCAATGAGG
CACTACGCGGACTCGACTCGGCTCCCGCGGAGCTGCTCACCCTGAAGCTT
CAAGGCATCCGACTACT
BS14847.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16826-PA | 1026 | CG16826-RA | 1..851 | 17..867 | 4255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:14:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16826-RB | 1248 | CG16826-RB | 25..875 | 17..867 | 4255 | 100 | Plus |
CG16826-RA | 1187 | CG16826-RA | 25..875 | 17..867 | 4255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:14:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13347797..13348647 | 17..867 | 4255 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:14:21 has no hits.
BS14847.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:04 Download gff for
BS14847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16826-PA | 1..851 | 17..867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:04:27 Download gff for
BS14847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16826-RA | 2..857 | 13..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:29:51 Download gff for
BS14847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16826-RA | 20..875 | 13..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:29:51 Download gff for
BS14847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13347792..13348647 | 13..867 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:04:27 Download gff for
BS14847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13347792..13348647 | 13..867 | 99 | | Plus |
BS14847.complete Sequence
1058 bp assembled on 2006-11-01
GenBank Submission: FJ637803
> BS14847.complete
GAAGTTATCAGTCGACATGCATTCGACCAAGTCAGCCGTTCTCCTGCTCG
CCCTGGCCATCAGCGCCAGCTGCGTTGTTGCCACACCGCATCCGGAATTC
TTGGATGAAATCTTCGGCTCCATAAACCAAACTGGCCAGCACATCATCAG
TGGATTCGTGAATGCCACCAGGAATGGCACGGCCATTGCTGGTGAGTTCC
TGGACAGCATAAGGAACTCCTCCGCCCAGTACACGCACGAAACCCTGGAG
TTTGCCCAAAAAATCGCAGATGCAGTTCATAGAGCCGCCACTGAGTCAAT
CGTCGACTTTTCCGCGACTCTGAGGGCGCAGATCGACGCACTGCATCAGG
GGATTGATCGGGTGAGAAACATCCTGCAGCGAGAGGCACTTAAGGATGCT
CTCGCCAGACTGCAGACCGTCAATACCGTCGTAAATGATCTGGAAGTGGC
CGTGAATAACCTCAATGATCGGATAGACGAGAAGAAACAAGAGTATTTCG
CCATAATCCAGAAGAAGTGGTACCAATGGTCTGACGCCCAATTGGAACGA
GTGGATAAGCTGACGAATGGAGTTGGCAACGAGGAAGCCGAGGAGATCAT
AAATGAGCTACTCTCCCGGTATTCCGGATATCTGCACAGCTGCCTGGAGG
AGTTGCAAGCGCAGCAAGCCACGTTTGAGCAAAATGTCCAAGAGGCCATC
GAAAAGTACCACAATGCCACCAACGAACTGACGGACCAAGTCGAGCTCTG
CGTCCAGTTCAACCTCAGCTTCCTGTCCTGCCGCAATGGCATCAATGAGG
CACTACGCGGACTCGACTCGGCTCCCGCGGAGCTGCTCACCCTGAAGCTT
CAAGGCATCCGACTACTGGCCATCGGCCTGAATGCCAGCGGATGTGTGGG
CCAGACCCTGGCCGAGCACGAGCTGGAGAAGCCCAGCGTGGAGCGCAAGC
TGGATGAGATCATTGCGGAGTACCAGGAGCAGCAGACTTCCACCGATGAC
GACTCTAGCTCTAATAATGAAACGACCACCATAAGTTCGTAGAAGCTTTC
TAGACCAT
BS14847.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:44:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16826-RB | 1026 | CG16826-PB | 1..1026 | 17..1042 | 5130 | 100 | Plus |
CG16826-RA | 1026 | CG16826-PA | 1..1026 | 17..1042 | 5130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:44:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16826-RB | 1248 | CG16826-RB | 25..1050 | 17..1042 | 5130 | 100 | Plus |
CG16826-RA | 1187 | CG16826-RA | 25..1050 | 17..1042 | 5130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:44:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13347797..13348822 | 17..1042 | 5130 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:44:37 has no hits.
BS14847.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:39 Download gff for
BS14847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16826-RA | 1..1026 | 17..1042 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:24 Download gff for
BS14847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16826-RA | 2..1038 | 13..1050 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:46 Download gff for
BS14847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16826-RA | 7..1032 | 17..1042 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:39 Download gff for
BS14847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16826-RA | 2..1038 | 13..1050 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:45 Download gff for
BS14847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16826-RA | 25..1050 | 17..1042 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:45 Download gff for
BS14847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13347797..13348822 | 17..1042 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:46 Download gff for
BS14847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13347797..13348822 | 17..1042 | 100 | | Plus |
BS14847.pep Sequence
Translation from 16 to 1041
> BS14847.pep
MHSTKSAVLLLALAISASCVVATPHPEFLDEIFGSINQTGQHIISGFVNA
TRNGTAIAGEFLDSIRNSSAQYTHETLEFAQKIADAVHRAATESIVDFSA
TLRAQIDALHQGIDRVRNILQREALKDALARLQTVNTVVNDLEVAVNNLN
DRIDEKKQEYFAIIQKKWYQWSDAQLERVDKLTNGVGNEEAEEIINELLS
RYSGYLHSCLEELQAQQATFEQNVQEAIEKYHNATNELTDQVELCVQFNL
SFLSCRNGINEALRGLDSAPAELLTLKLQGIRLLAIGLNASGCVGQTLAE
HELEKPSVERKLDEIIAEYQEQQTSTDDDSSSNNETTTISS*
BS14847.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16826-PB | 341 | CG16826-PB | 1..341 | 1..341 | 1709 | 100 | Plus |
CG16826-PA | 341 | CG16826-PA | 1..341 | 1..341 | 1709 | 100 | Plus |
CG33109-PA | 296 | CG33109-PA | 86..295 | 113..326 | 239 | 28 | Plus |