Clone Sequence Records
BS14852.complete Sequence
2318 bp assembled on 2009-12-07
GenBank Submission: KX804208
> BS14852.complete
GAAGTTATCAGTCGACATGCTGCGCCTACTCGTGTCCAATTGCGGCAGGA
GCAGCGACATATTTAGTCGCCACCTGCTGCAGCCCACGCAGCAGCCACTG
CCACGCCTCCAGAATGCCGCCCGCCTGATGCGCCAACATTTGCGTGGAAC
GAACGCTCCCCAACCGCCCGCGATACCGCCCACAAATGCCAGCCGCCTGC
TGCAGACGACACGCCTGCTTGTGTGGGGCGGTGGTAGTTTAGCTATCGGT
CTGGGCGCCCGTTCCTGGTGGGCGGGGCATCGCGGAGCGATCGTTCATTG
CGAAGGCAGCCGGCTGGCCATTCGAAAGGAGGAGGAGGAGGAGGACACTG
CGTCGGAGCAGCACTTCGACTGGAAGCGTTTGTGGACCTACTTGGAGCCA
CATCTCTGGGAGCTGATCGGGGCCGTATGCGCCGCCCTGATAGTGGCTTA
TATCAACATACGCATCCCAAATCTTCTCGGTGACCTGGTAAACACACTGG
CCAGATATGCCAACACGTACGTGATGGATCCGATTAACAACTCGTTCGTA
AAGGACGTGAGCAAACCGGCCAGCAATCTGCTGAGCCTATACATGCTGCA
ATCTGGTTTCACCTTTATGTACATCTACCTGTTGAGCCGCGTCGGTGAGC
AGATGGCAGCCAAGATGCGGCAGGATCTGTTCACGCAGATTGTCGTCCAG
GACATCGCATTCTTCGATGAGAATCGAACGGGCGAGCTGGTCAATCGACT
AACCGCCGATGTACAGGACTTCAAGACCTCGTTCAAGCAGTTCGTCTCCC
AGGGACTGCGAAGTGCTGCCCAGCTGATTGGCGGCAGTATATCGCTCTTC
ATGATTTCACCGCACATGGCCGCCATTGCGCTGGCCAGCGTTCCGTGCGT
GGTTATGTTCATGACGTATTTGGGCAAGAAACTGCGCTCTCTAAGCAAAA
GCTCACAGGCGCAGGCGGAACGAGCGACGGGTGTCTGCGAGGAGGCGCTG
TCCAACATCCGAACGGTTAGATCCAGTGCCTGTGAATACCGCGAGATGCA
GCTGTTCGAGGCGGAGACCAATGAGGCGGCTCGCCTGGCGCAGAAACTCG
GCTACGGCATCGCAATCTTCCAGGGCCTGACCAACTTCTTCCTCAATACA
CTAGTCCTATCTACGCTCTTTATGGGCGGCCACCTCATGTCTACGGAGAG
TCTGTCGCCGGGTGCTCTGATGGCCTTCCTGGTCGCTTCGCAGGGTGTGC
AGCGATCCCTTGCCCAGGGATCCATCCTGCTGGGCACCATGATCAGAGGC
ATGTCGGCCGGCAGTCGAGTCTTCGAGTTCCTATCGCTGCAGCCACAGGT
GGAATTGCTGCGCGGCTACATCATCCCGCAGGAGCGGCTTCACGGCGAGA
TTCGATTCGAGAACGTCTCATTCGCATATCCCATGCAACCCGATCATCTG
GTGCTCAAGGACTTTAGCCTGACGCTCCGCCCGGGCCAGACGGTGGCCCT
GGTGGGAGCCAGTGGATCGGGCAAGTCGACGATAGCGTCGCTGGTGGAAC
GCTTCTACGAACCATCGGCGGGCAATATCAAACTGGACGGCTACAAGCTG
TCGGACATATCGCCCTATTGGCTGCGGTCCAATGTCCTCGGTTTCATCGA
ACAGCAGCCGGTGCTGTTTGGCACATCGATATTGGAGAACATCCGATATG
GTAAACCAGATGCGGGCGAGGAGGATGTGTATGCGGCAGCGCGTCTATCA
CAATCGCACGACTTTGTGACCGCCCTGCCCGATGGATATGCGACGCATGT
GGGCGAACGGGGCACCCAGTTGAGCGGCGGTCAGCGGCAACGCATCGCCA
TTGCACGGGCGCTGCTCAAGAATCCGCGCATCCTCATCCTCGACGAGGCG
ACGAGTGCCTTGGACGCCACCAGCGAGGCGGAAGTGCAGAAGGCACTCGA
TACAGTGGTCCAGAATCGCACCACTCTGGTGATTGCCCATCGCTTGTCCA
CGATACGAAACGCTGACCTCATTGTCGTCCTTGATCAGGGACGCGTCGTG
GAGACCGGCAAACATGACGAACTGATGGGCAAGCGGGGCCTGTACTTTGA
GCTGGTGCGTCAGCAGGAACGACGGGACATCCAGGAGCAAGTCCAGGCGG
TGGAGGACGTTGTGGCCGTCAAGGAGCAGCAGGCAACTGCAACAGAAACT
TCAACAGCCGCAACAATTGCAACTGCCGCAGAAACTTCCGCAGCAACAGT
GACAGTGGGGAGCAGCAGCTTCGGTGGCAGGGCAAACGCAGCGCAAGGAT
AGAAGCTTTCTAGACCAT
BS14852.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:43:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1824-RA | 2286 | CG1824-PA | 1..2286 | 17..2302 | 11415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1824-RA | 2509 | CG1824-RA | 79..2364 | 17..2302 | 11415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12593876..12594892 | 1447..431 | 5070 | 99.9 | Minus |
| X | 23542271 | X | 12593007..12593612 | 2053..1448 | 3030 | 100 | Minus |
| X | 23542271 | X | 12594967..12595336 | 431..62 | 1850 | 100 | Minus |
| X | 23542271 | X | 12592700..12592950 | 2302..2052 | 1255 | 100 | Minus |
| X | 23542271 | X | 12595497..12595546 | 66..17 | 250 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:43:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3284..3350 | 2183..2249 | 137 | 67.2 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 529..568 | 2175..2215 | 121 | 80.5 | Plus |
BS14852.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:43 Download gff for
BS14852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1824-RA | 1..2286 | 17..2302 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:52 Download gff for
BS14852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1824-RA | 94..2379 | 17..2302 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:56:04 Download gff for
BS14852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1824-RA | 79..2364 | 17..2302 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:35:00 Download gff for
BS14852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1824-RA | 94..2379 | 17..2302 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:27 Download gff for
BS14852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1824-RA | 79..2364 | 17..2302 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:27 Download gff for
BS14852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12592700..12592948 | 2054..2302 | 100 | <- | Minus |
| X | 12593007..12593612 | 1448..2053 | 100 | <- | Minus |
| X | 12593876..12594892 | 431..1447 | 99 | <- | Minus |
| X | 12594968..12595331 | 67..430 | 100 | <- | Minus |
| X | 12595497..12595546 | 17..66 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:56:04 Download gff for
BS14852.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12486733..12486981 | 2054..2302 | 100 | <- | Minus |
| arm_X | 12487040..12487645 | 1448..2053 | 100 | <- | Minus |
| arm_X | 12487909..12488925 | 431..1447 | 99 | <- | Minus |
| arm_X | 12489001..12489364 | 67..430 | 100 | <- | Minus |
| arm_X | 12489530..12489579 | 17..66 | 100 | | Minus |
BS14852.3prime Sequence
866 bp (759 high quality bases) assembled on 2006-10-13
> BS14852.3prime
ATGGTCTAGAAAGCTTCTATCCTTGCGCTGCGTTTGCCCTGCCACCGAAG
CTGCTGCTCCCCACTGTCACTGTTGCTGCGGAAGTTTCTGCGGCAGTTGC
AATTGTTGCGGCTGTTGAAGTTTCTGTTGCAGTTGCCTGCTGCTCCTTGA
CGGCCACAACGTCCTCCACCGCCTGGACTTGCTCCTGGATGTCCCGTCGT
TCCTGCTGACGCACCAGCTCAAAGTACAGGCCCCGCTTGCCCATCAGTTC
GTCATGTTTGCCGGTCTCCACGACGCGTCCCTGATCAAGGACGACAATGA
GGTCAGCGTTTCGTATCGTGGACAAGCGATGGGCAATCACCAGAGTGGTG
CGATTCTGGACCACTGTATCGAGTGCCTTCTGCACTTCCGCCTCGCTGGT
GGCGTCCAAGGCACTCGTCGCCTCGTCGAGGATGAGGATGCGCGGATTCT
TGAGCAGCGCCCGTGCAATGGCGATGCGTTGCCGCTGACCGCCGCTCAAC
TGGGTGCCCCGTTCGCCCACATGCGTCGCATATCCATCGGGCAGGGCGGT
CACAAAGTCGTGCGATTGTGATAGACGCGCTGCCGCATACACATCCTCCT
CGCCCGCATCTGGTTTACCATATCGGATGTTCTCCAATATCGATGTGCCA
AACAGCACCGGCTGCTGTTCGATGAAACCGAGGACATTGGACCGCAGCCA
ATAGGGCGATATGTCCGACAGCTTGTAGCCGTCCAGTTTGATATTGCCCG
CCGATGGTTCGTAGAAGCGTTCCACCAGCGACGCTATCGTCGACTTGCCC
GATCCACTGGCTCCCACCAGGGCCACCGTCTGGCCCGGGCGGAGCGTCAA
GCTAAAGTCCTTGAGC
BS14852.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1824-PA | 2286 | CG1824-RA | 1437..2286 | 866..17 | 4225 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:13:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1824-RA | 2509 | CG1824-RA | 1515..2364 | 866..17 | 4235 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:12:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12593007..12593607 | 266..866 | 2990 | 99.8 | Plus |
| X | 23542271 | X | 12592700..12592950 | 17..267 | 1255 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 06:12:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3284..3350 | 136..70 | 137 | 67.2 | Minus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 529..568 | 144..104 | 121 | 80.5 | Minus |
BS14852.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:08 Download gff for
BS14852.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1824-PA | 1437..2286 | 17..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:43:38 Download gff for
BS14852.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1824-RA | 1515..2364 | 17..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:16:22 Download gff for
BS14852.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1824-RA | 1515..2364 | 17..866 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:16:22 Download gff for
BS14852.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12592700..12592948 | 17..265 | 100 | <- | Plus |
| X | 12593007..12593607 | 266..866 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:43:38 Download gff for
BS14852.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12486733..12486981 | 17..265 | 100 | <- | Plus |
| arm_X | 12487040..12487640 | 266..866 | 99 | | Plus |
BS14852.5prime Sequence
871 bp (768 high quality bases) assembled on 2006-10-13
> BS14852.5prime
GAAGTTATCAGTCGACATGCTGCGCCTACTCGTGTCCAATTGCGGCAGGA
GCAGCGACATATTTAGTCGCCACCTGCTGCAGCCCACGCAGCAGCCACTG
CCACGCCTCCAGAATGCCGCCCGCCTGATGCGCCAACATTTGCGTGGAAC
GAACGCTCCCCAACCGCCCGCGATACCGCCCACAAATGCCAGCCGCCTGC
TGCAGACGACACGCCTGCTTGTGTGGGGCGGTGGTAGTTTAGCTATCGGT
CTGGGCGCCCGTTCCTGGTGGGCGGGGCATCGCGGAGCGATCGTTCATTG
CGAAGGCAGCCGGCTGGCCATTCGAAAGGAGGAGGAGGAGGAGGACACTG
CGTCGGAGCAGCACTTCGACTGGAAGCGTTTGTGGACCTACTTGGAGCCA
CATCTCTGGGAGCTGATCGGGGCCGTATGCGCCGCCCTGATAGTGGCTTA
TATCAACATACGCATCCCAAATCTTCTCGGTGACCTGGTAAACACACTGG
CCAGATATGCCAACACGTACGTGATGGATCCGATTAACAACTCGTTCGTA
AAGGACGTGAGCAAACCGGCCAGCAATCTGCTGAGCCTATACATGCTGCA
ATCTGGTTTCACCTTTATGTACATCTACCTGTTGAGCCGCGTCGGTGAGC
AGATGGCAGCCAAGATGCGGCAGGATCTGTTCACGCAGATTGTCGTCCAG
GACATCGCATTCTTCGATGAGAATCGAACGGGCGAGCTGGTCAATCGACT
AACCGCCGATGTACAGGACTTCAAGACCTCGTTCAAGCAGTTCGTCTCCC
AGGGACTGCGAAGTGCTGCCCAGCTGATTGGCGGCAGTATATTCGCTCTT
CATGATTTCACCGCACATGGC
BS14852.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:20:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1824-PA | 2286 | CG1824-RA | 1..854 | 17..871 | 4235 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:11:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1824-RA | 2509 | CG1824-RA | 79..932 | 17..871 | 4250 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:11:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12594453..12594892 | 871..431 | 2155 | 99.8 | Minus |
| X | 23542271 | X | 12594967..12595336 | 431..62 | 1850 | 100 | Minus |
| X | 23542271 | X | 12595497..12595546 | 66..17 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:11:15 has no hits.
BS14852.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:09 Download gff for
BS14852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1824-PA | 1..854 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:43:03 Download gff for
BS14852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1824-RA | 72..932 | 10..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:50:44 Download gff for
BS14852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1824-RA | 72..932 | 10..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:50:44 Download gff for
BS14852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12594453..12594892 | 431..871 | 99 | <- | Minus |
| X | 12594968..12595331 | 67..430 | 100 | <- | Minus |
| X | 12595497..12595553 | 10..66 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:43:03 Download gff for
BS14852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12488486..12488925 | 431..871 | 99 | <- | Minus |
| arm_X | 12489001..12489364 | 67..430 | 100 | <- | Minus |
| arm_X | 12489530..12489586 | 10..66 | 94 | | Minus |
BS14852.pep Sequence
Translation from 16 to 2301
> BS14852.pep
MLRLLVSNCGRSSDIFSRHLLQPTQQPLPRLQNAARLMRQHLRGTNAPQP
PAIPPTNASRLLQTTRLLVWGGGSLAIGLGARSWWAGHRGAIVHCEGSRL
AIRKEEEEEDTASEQHFDWKRLWTYLEPHLWELIGAVCAALIVAYINIRI
PNLLGDLVNTLARYANTYVMDPINNSFVKDVSKPASNLLSLYMLQSGFTF
MYIYLLSRVGEQMAAKMRQDLFTQIVVQDIAFFDENRTGELVNRLTADVQ
DFKTSFKQFVSQGLRSAAQLIGGSISLFMISPHMAAIALASVPCVVMFMT
YLGKKLRSLSKSSQAQAERATGVCEEALSNIRTVRSSACEYREMQLFEAE
TNEAARLAQKLGYGIAIFQGLTNFFLNTLVLSTLFMGGHLMSTESLSPGA
LMAFLVASQGVQRSLAQGSILLGTMIRGMSAGSRVFEFLSLQPQVELLRG
YIIPQERLHGEIRFENVSFAYPMQPDHLVLKDFSLTLRPGQTVALVGASG
SGKSTIASLVERFYEPSAGNIKLDGYKLSDISPYWLRSNVLGFIEQQPVL
FGTSILENIRYGKPDAGEEDVYAAARLSQSHDFVTALPDGYATHVGERGT
QLSGGQRQRIAIARALLKNPRILILDEATSALDATSEAEVQKALDTVVQN
RTTLVIAHRLSTIRNADLIVVLDQGRVVETGKHDELMGKRGLYFELVRQQ
ERRDIQEQVQAVEDVVAVKEQQATATETSTAATIATAAETSAATVTVGSS
SFGGRANAAQG*
BS14852.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:01:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1824-PA | 761 | CG1824-PA | 1..761 | 1..761 | 3820 | 100 | Plus |
| CG3156-PA | 692 | CG3156-PA | 67..686 | 84..700 | 987 | 37 | Plus |
| Mdr49-PA | 1302 | CG3879-PA | 137..658 | 203..722 | 830 | 37.6 | Plus |
| Mdr50-PA | 1313 | CG8523-PA | 66..672 | 109..704 | 800 | 33.6 | Plus |
| Mdr49-PB | 1101 | CG3879-PB | 6..457 | 273..722 | 792 | 40.8 | Plus |
| Mdr50-PA | 1313 | CG8523-PA | 779..1309 | 174..700 | 733 | 34.6 | Plus |
| Mdr49-PA | 1302 | CG3879-PA | 798..1299 | 204..701 | 730 | 36.6 | Plus |
