Clone Sequence Records
BS14853.3prime Sequence
510 bp (510 high quality bases) assembled on 2006-10-13
> BS14853.3prime
ATGGTCTAGAAAGCTTTCAATAGCCTAGATAGTAATCATAATCATATTCT
TGTATCGCCGGTGGTGCAAAGCATTTCTTCAAACTATTCACAAACACCTC
TTCTTTTTTCTGATTAGAGAACTTGTAGGCATTCTTAAGTTCATTTTCCT
GATGCTGGTAGAATCGGACACATCTCTTGCCTCCTTTTCTTAATGATATT
AGGGATCTGAGCGTGTTCAAGCGCTGAGTAATGTTATCTTCAAGCAATTG
GCGTTGTTCATCGTATACTTTGAAGTAACCTTCTGTGTCCAACTTTACTT
CAAGGTTACTTCGGGCAGCAGCGTTGTTTACTTTTTCAATCCACCGGGAG
AACTCCGCGTTTCCGGTGGCTAAGTATTTATACTTGTTTACAATATTTCG
AAGTCTCCACGTCACCAGCCTTTCGTGTTCATCATATTCCTTACTACTAA
GGGCAAAGCCCAGATTCGCCAATACTAAGAGTGCTATTATCTTCATGTCG
ACTGATAACT
BS14853.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17472-PA | 480 | CG17472-RA | 1..480 | 496..17 | 2400 | 100 | Minus |
CG31680-PA | 444 | CG31680-RA | 1..43 | 496..454 | 215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:24:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17472-RA | 582 | CG17472-RA | 51..530 | 496..17 | 2400 | 100 | Minus |
CG31680-RA | 527 | CG31680-RA | 30..205 | 496..318 | 355 | 81 | Minus |
CG31680-RA | 527 | CG31680-RA | 243..391 | 244..96 | 265 | 78.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:24:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20634678..20635115 | 454..17 | 2190 | 100 | Minus |
2L | 23513712 | 2L | 20639136..20639378 | 454..198 | 845 | 89.5 | Minus |
2L | 23513712 | 2L | 20639385..20639526 | 158..17 | 500 | 90.1 | Minus |
2L | 23513712 | 2L | 20640434..20640582 | 244..96 | 265 | 78.5 | Minus |
2L | 23513712 | 2L | 20640293..20640396 | 421..318 | 250 | 82.7 | Minus |
2L | 23513712 | 2L | 20634565..20634607 | 496..454 | 215 | 100 | Minus |
2L | 23513712 | 2L | 20640150..20640192 | 496..454 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:24:26 has no hits.
BS14853.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:09 Download gff for
BS14853.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17472-PA | 1..480 | 17..496 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:25:31 Download gff for
BS14853.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17472-RA | 42..535 | 10..509 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:23 Download gff for
BS14853.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17472-RA | 42..535 | 10..509 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:23 Download gff for
BS14853.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20634556..20634607 | 454..509 | 91 | -> | Minus |
2L | 20634679..20635118 | 14..453 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:25:31 Download gff for
BS14853.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20634556..20634607 | 454..509 | 91 | -> | Minus |
arm_2L | 20634679..20635118 | 14..453 | 99 | -> | Minus |
BS14853.5prime Sequence
510 bp (510 high quality bases) assembled on 2006-10-13
> BS14853.5prime
GAAGTTATCAGTCGACATGAAGATAATAGCACTCTTAGTATTGGCGAATC
TGGGCTTTGCCCTTAGTAGTAAGGAATATGATGAACACGAAAGGCTGGTG
ACGTGGAGACTTCGAAATATTGTAAACAAGTATAAATACTTAGCCACCGG
AAACGCGGAGTTCTCCCGGTGGATTGAAAAAGTAAACAACGCTGCTGCCC
GAAGTAACCTTGAAGTAAAGTTGGACACAGAAGGTTACTTCAAAGTATAC
GATGAACAACGCCAATTGCTTGAAGATAACATTACTCAGCGCTTGAACAC
GCTCAGATCCCTAATATCATTAAGAAAAGGAGGCAAGAGATGTGTCCGAT
TCTACCAGCATCAGGAAAATGAACTTAAGAATGCCTACAAGTTCTCTAAT
CAGAAAAAAGAAGAGGTGTTTGTGAATAGTTTGAAGAAATGCTTTGCACC
ACCGGCGATACAAGAATATGATTATGATTACTATCTAGGCTATTGAAAGC
TTTCTAGACC
BS14853.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17472-PA | 480 | CG17472-RA | 1..480 | 17..496 | 2400 | 100 | Plus |
CG31680-PA | 444 | CG31680-RA | 1..43 | 17..59 | 215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:14:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17472-RA | 582 | CG17472-RA | 51..530 | 17..496 | 2400 | 100 | Plus |
CG31680-RA | 527 | CG31680-RA | 30..205 | 17..195 | 355 | 81 | Plus |
CG31680-RA | 527 | CG31680-RA | 243..391 | 269..417 | 265 | 78.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:14:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20634678..20635115 | 59..496 | 2190 | 100 | Plus |
2L | 23513712 | 2L | 20639136..20639378 | 59..315 | 845 | 89.5 | Plus |
2L | 23513712 | 2L | 20639385..20639526 | 355..496 | 500 | 90.1 | Plus |
2L | 23513712 | 2L | 20640434..20640582 | 269..417 | 265 | 78.5 | Plus |
2L | 23513712 | 2L | 20640293..20640396 | 92..195 | 250 | 82.7 | Plus |
2L | 23513712 | 2L | 20634565..20634607 | 17..59 | 215 | 100 | Plus |
2L | 23513712 | 2L | 20640150..20640192 | 17..59 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:14:25 has no hits.
BS14853.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:09 Download gff for
BS14853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17472-PA | 1..480 | 17..496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:04:29 Download gff for
BS14853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17472-RA | 42..535 | 4..503 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:30:04 Download gff for
BS14853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17472-RA | 42..535 | 4..503 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:30:04 Download gff for
BS14853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20634556..20634607 | 4..59 | 91 | -> | Plus |
2L | 20634679..20635118 | 60..499 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:04:29 Download gff for
BS14853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20634556..20634607 | 4..59 | 91 | -> | Plus |
arm_2L | 20634679..20635118 | 60..499 | 99 | -> | Plus |
BS14853.complete Sequence
512 bp assembled on 2006-11-01
GenBank Submission: FJ637805
> BS14853.complete
GAAGTTATCAGTCGACATGAAGATAATAGCACTCTTAGTATTGGCGAATC
TGGGCTTTGCCCTTAGTAGTAAGGAATATGATGAACACGAAAGGCTGGTG
ACGTGGAGACTTCGAAATATTGTAAACAAGTATAAATACTTAGCCACCGG
AAACGCGGAGTTCTCCCGGTGGATTGAAAAAGTAAACAACGCTGCTGCCC
GAAGTAACCTTGAAGTAAAGTTGGACACAGAAGGTTACTTCAAAGTATAC
GATGAACAACGCCAATTGCTTGAAGATAACATTACTCAGCGCTTGAACAC
GCTCAGATCCCTAATATCATTAAGAAAAGGAGGCAAGAGATGTGTCCGAT
TCTACCAGCATCAGGAAAATGAACTTAAGAATGCCTACAAGTTCTCTAAT
CAGAAAAAAGAAGAGGTGTTTGTGAATAGTTTGAAGAAATGCTTTGCACC
ACCGGCGATACAAGAATATGATTATGATTACTATCTAGGCTATTGAAAGC
TTTCTAGACCAT
BS14853.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:52:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17472-RA | 480 | CG17472-PA | 1..480 | 17..496 | 2400 | 100 | Plus |
CG31680-RA | 444 | CG31680-PA | 1..176 | 17..195 | 305 | 79.3 | Plus |
CG31680-RA | 444 | CG31680-PA | 214..362 | 269..417 | 265 | 78.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:52:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17472-RA | 582 | CG17472-RA | 51..530 | 17..496 | 2400 | 100 | Plus |
CG31680-RA | 527 | CG31680-RA | 30..205 | 17..195 | 305 | 79.3 | Plus |
CG31680-RA | 527 | CG31680-RA | 243..391 | 269..417 | 265 | 78.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:52:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20634678..20635115 | 59..496 | 2190 | 100 | Plus |
2L | 23513712 | 2L | 20639136..20639378 | 59..315 | 845 | 89.5 | Plus |
2L | 23513712 | 2L | 20639385..20639526 | 355..496 | 500 | 90.1 | Plus |
2L | 23513712 | 2L | 20640434..20640582 | 269..417 | 265 | 78.5 | Plus |
2L | 23513712 | 2L | 20640293..20640396 | 92..195 | 250 | 82.7 | Plus |
2L | 23513712 | 2L | 20640150..20640192 | 17..59 | 215 | 100 | Plus |
2L | 23513712 | 2L | 20634565..20634607 | 17..59 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:52:16 has no hits.
BS14853.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:30:58 Download gff for
BS14853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17472-RA | 1..480 | 17..496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:14:53 Download gff for
BS14853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17472-RA | 1..493 | 8..503 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:40:20 Download gff for
BS14853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17472-RA | 51..529 | 17..495 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:30:58 Download gff for
BS14853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17472-RA | 1..493 | 8..503 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:01 Download gff for
BS14853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17472-RA | 51..529 | 17..495 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:01 Download gff for
BS14853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20634565..20634607 | 17..59 | 100 | -> | Plus |
2L | 20634679..20635114 | 60..495 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:40:20 Download gff for
BS14853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20634565..20634607 | 17..59 | 100 | -> | Plus |
arm_2L | 20634679..20635114 | 60..495 | 100 | | Plus |
BS14853.pep Sequence
Translation from 16 to 495
> BS14853.pep
MKIIALLVLANLGFALSSKEYDEHERLVTWRLRNIVNKYKYLATGNAEFS
RWIEKVNNAAARSNLEVKLDTEGYFKVYDEQRQLLEDNITQRLNTLRSLI
SLRKGGKRCVRFYQHQENELKNAYKFSNQKKEEVFVNSLKKCFAPPAIQE
YDYDYYLGY*
BS14853.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17472-PA | 159 | CG17472-PA | 1..159 | 1..159 | 827 | 100 | Plus |
CG31680-PA | 147 | CG31680-PA | 1..129 | 1..142 | 363 | 53.5 | Plus |
Sfp38D-PB | 169 | CG42606-PB | 1..146 | 1..142 | 232 | 36.1 | Plus |
Sfp38D-PA | 169 | CG42606-PA | 1..146 | 1..142 | 232 | 36.1 | Plus |
CG43074-PA | 182 | CG43074-PA | 47..181 | 21..157 | 166 | 29.5 | Plus |