Clone BS14853 Report

Search the DGRC for BS14853

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:148
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG17472-RA
Protein status:BS14853.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14853.3prime Sequence

510 bp (510 high quality bases) assembled on 2006-10-13

> BS14853.3prime
ATGGTCTAGAAAGCTTTCAATAGCCTAGATAGTAATCATAATCATATTCT
TGTATCGCCGGTGGTGCAAAGCATTTCTTCAAACTATTCACAAACACCTC
TTCTTTTTTCTGATTAGAGAACTTGTAGGCATTCTTAAGTTCATTTTCCT
GATGCTGGTAGAATCGGACACATCTCTTGCCTCCTTTTCTTAATGATATT
AGGGATCTGAGCGTGTTCAAGCGCTGAGTAATGTTATCTTCAAGCAATTG
GCGTTGTTCATCGTATACTTTGAAGTAACCTTCTGTGTCCAACTTTACTT
CAAGGTTACTTCGGGCAGCAGCGTTGTTTACTTTTTCAATCCACCGGGAG
AACTCCGCGTTTCCGGTGGCTAAGTATTTATACTTGTTTACAATATTTCG
AAGTCTCCACGTCACCAGCCTTTCGTGTTCATCATATTCCTTACTACTAA
GGGCAAAGCCCAGATTCGCCAATACTAAGAGTGCTATTATCTTCATGTCG
ACTGATAACT

BS14853.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG17472-PA 480 CG17472-RA 1..480 496..17 2400 100 Minus
CG31680-PA 444 CG31680-RA 1..43 496..454 215 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG17472-RA 582 CG17472-RA 51..530 496..17 2400 100 Minus
CG31680-RA 527 CG31680-RA 30..205 496..318 355 81 Minus
CG31680-RA 527 CG31680-RA 243..391 244..96 265 78.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:24:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20634678..20635115 454..17 2190 100 Minus
2L 23513712 2L 20639136..20639378 454..198 845 89.5 Minus
2L 23513712 2L 20639385..20639526 158..17 500 90.1 Minus
2L 23513712 2L 20640434..20640582 244..96 265 78.5 Minus
2L 23513712 2L 20640293..20640396 421..318 250 82.7 Minus
2L 23513712 2L 20634565..20634607 496..454 215 100 Minus
2L 23513712 2L 20640150..20640192 496..454 215 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:24:26 has no hits.

BS14853.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:09 Download gff for BS14853.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17472-PA 1..480 17..496 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:25:31 Download gff for BS14853.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17472-RA 42..535 10..509 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:23 Download gff for BS14853.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17472-RA 42..535 10..509 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:23 Download gff for BS14853.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20634556..20634607 454..509 91 -> Minus
2L 20634679..20635118 14..453 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:25:31 Download gff for BS14853.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20634556..20634607 454..509 91 -> Minus
arm_2L 20634679..20635118 14..453 99 -> Minus

BS14853.5prime Sequence

510 bp (510 high quality bases) assembled on 2006-10-13

> BS14853.5prime
GAAGTTATCAGTCGACATGAAGATAATAGCACTCTTAGTATTGGCGAATC
TGGGCTTTGCCCTTAGTAGTAAGGAATATGATGAACACGAAAGGCTGGTG
ACGTGGAGACTTCGAAATATTGTAAACAAGTATAAATACTTAGCCACCGG
AAACGCGGAGTTCTCCCGGTGGATTGAAAAAGTAAACAACGCTGCTGCCC
GAAGTAACCTTGAAGTAAAGTTGGACACAGAAGGTTACTTCAAAGTATAC
GATGAACAACGCCAATTGCTTGAAGATAACATTACTCAGCGCTTGAACAC
GCTCAGATCCCTAATATCATTAAGAAAAGGAGGCAAGAGATGTGTCCGAT
TCTACCAGCATCAGGAAAATGAACTTAAGAATGCCTACAAGTTCTCTAAT
CAGAAAAAAGAAGAGGTGTTTGTGAATAGTTTGAAGAAATGCTTTGCACC
ACCGGCGATACAAGAATATGATTATGATTACTATCTAGGCTATTGAAAGC
TTTCTAGACC

BS14853.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG17472-PA 480 CG17472-RA 1..480 17..496 2400 100 Plus
CG31680-PA 444 CG31680-RA 1..43 17..59 215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:14:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG17472-RA 582 CG17472-RA 51..530 17..496 2400 100 Plus
CG31680-RA 527 CG31680-RA 30..205 17..195 355 81 Plus
CG31680-RA 527 CG31680-RA 243..391 269..417 265 78.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20634678..20635115 59..496 2190 100 Plus
2L 23513712 2L 20639136..20639378 59..315 845 89.5 Plus
2L 23513712 2L 20639385..20639526 355..496 500 90.1 Plus
2L 23513712 2L 20640434..20640582 269..417 265 78.5 Plus
2L 23513712 2L 20640293..20640396 92..195 250 82.7 Plus
2L 23513712 2L 20634565..20634607 17..59 215 100 Plus
2L 23513712 2L 20640150..20640192 17..59 215 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:14:25 has no hits.

BS14853.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:09 Download gff for BS14853.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17472-PA 1..480 17..496 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:04:29 Download gff for BS14853.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17472-RA 42..535 4..503 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:30:04 Download gff for BS14853.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17472-RA 42..535 4..503 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:30:04 Download gff for BS14853.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20634556..20634607 4..59 91 -> Plus
2L 20634679..20635118 60..499 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:04:29 Download gff for BS14853.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20634556..20634607 4..59 91 -> Plus
arm_2L 20634679..20635118 60..499 99 -> Plus

BS14853.complete Sequence

512 bp assembled on 2006-11-01

GenBank Submission: FJ637805

> BS14853.complete
GAAGTTATCAGTCGACATGAAGATAATAGCACTCTTAGTATTGGCGAATC
TGGGCTTTGCCCTTAGTAGTAAGGAATATGATGAACACGAAAGGCTGGTG
ACGTGGAGACTTCGAAATATTGTAAACAAGTATAAATACTTAGCCACCGG
AAACGCGGAGTTCTCCCGGTGGATTGAAAAAGTAAACAACGCTGCTGCCC
GAAGTAACCTTGAAGTAAAGTTGGACACAGAAGGTTACTTCAAAGTATAC
GATGAACAACGCCAATTGCTTGAAGATAACATTACTCAGCGCTTGAACAC
GCTCAGATCCCTAATATCATTAAGAAAAGGAGGCAAGAGATGTGTCCGAT
TCTACCAGCATCAGGAAAATGAACTTAAGAATGCCTACAAGTTCTCTAAT
CAGAAAAAAGAAGAGGTGTTTGTGAATAGTTTGAAGAAATGCTTTGCACC
ACCGGCGATACAAGAATATGATTATGATTACTATCTAGGCTATTGAAAGC
TTTCTAGACCAT

BS14853.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG17472-RA 480 CG17472-PA 1..480 17..496 2400 100 Plus
CG31680-RA 444 CG31680-PA 1..176 17..195 305 79.3 Plus
CG31680-RA 444 CG31680-PA 214..362 269..417 265 78.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:52:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG17472-RA 582 CG17472-RA 51..530 17..496 2400 100 Plus
CG31680-RA 527 CG31680-RA 30..205 17..195 305 79.3 Plus
CG31680-RA 527 CG31680-RA 243..391 269..417 265 78.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20634678..20635115 59..496 2190 100 Plus
2L 23513712 2L 20639136..20639378 59..315 845 89.5 Plus
2L 23513712 2L 20639385..20639526 355..496 500 90.1 Plus
2L 23513712 2L 20640434..20640582 269..417 265 78.5 Plus
2L 23513712 2L 20640293..20640396 92..195 250 82.7 Plus
2L 23513712 2L 20640150..20640192 17..59 215 100 Plus
2L 23513712 2L 20634565..20634607 17..59 215 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:52:16 has no hits.

BS14853.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:30:58 Download gff for BS14853.complete
Subject Subject Range Query Range Percent Splice Strand
CG17472-RA 1..480 17..496 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:14:53 Download gff for BS14853.complete
Subject Subject Range Query Range Percent Splice Strand
CG17472-RA 1..493 8..503 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:40:20 Download gff for BS14853.complete
Subject Subject Range Query Range Percent Splice Strand
CG17472-RA 51..529 17..495 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:30:58 Download gff for BS14853.complete
Subject Subject Range Query Range Percent Splice Strand
CG17472-RA 1..493 8..503 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:01 Download gff for BS14853.complete
Subject Subject Range Query Range Percent Splice Strand
CG17472-RA 51..529 17..495 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:01 Download gff for BS14853.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20634565..20634607 17..59 100 -> Plus
2L 20634679..20635114 60..495 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:40:20 Download gff for BS14853.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20634565..20634607 17..59 100 -> Plus
arm_2L 20634679..20635114 60..495 100   Plus

BS14853.pep Sequence

Translation from 16 to 495

> BS14853.pep
MKIIALLVLANLGFALSSKEYDEHERLVTWRLRNIVNKYKYLATGNAEFS
RWIEKVNNAAARSNLEVKLDTEGYFKVYDEQRQLLEDNITQRLNTLRSLI
SLRKGGKRCVRFYQHQENELKNAYKFSNQKKEEVFVNSLKKCFAPPAIQE
YDYDYYLGY*

BS14853.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG17472-PA 159 CG17472-PA 1..159 1..159 827 100 Plus
CG31680-PA 147 CG31680-PA 1..129 1..142 363 53.5 Plus
Sfp38D-PB 169 CG42606-PB 1..146 1..142 232 36.1 Plus
Sfp38D-PA 169 CG42606-PA 1..146 1..142 232 36.1 Plus
CG43074-PA 182 CG43074-PA 47..181 21..157 166 29.5 Plus