Clone Sequence Records
BS14856.3prime Sequence
681 bp (681 high quality bases) assembled on 2006-10-13
> BS14856.3prime
ATGGTCTAGAAAGCTTCTACAGCTCCGAGTGGGCGTACTCGTCGTGCGTT
GAGCTCTTCTCCTTGGGCACGATAAAGAGGCCCTCCGCCGTGGTCCAGCG
CGTTCCGTGCTGCGGCTTGTGGACGCCAACGATTTCCATTTGGCCGGAGA
TGGGTCTGCCATAGGAGCGGCCGGACATGCCCAGGTACATGCCGGTGTCG
ATGTGGCGCAGCCTAACGTGGGCACTGCGCATCCAGTTCTCGTTGGAGCA
GACCACCTCCCAGTGGTCGCCGGTGTCGCCGAGTCCATCCGTTCCGTACG
CGGACACCTCCTGCTCGCCTGAGAGCGGCGACGAAAAGTGGTGCGAGTGC
AGGTTCTTCTTGGTGGACAGGTGCTCCAGTCGCACGGTGGATCCGCAGGC
GATGGGCTCGCCCCTTTCACAAAGCTCGCCGGTCTGCGCCTTGATCACCC
AGTGGCTGTTCACGTCCTCCTTCTGCTCCACGCCCGTCACCGACTGCTGC
CCGGAACCAGATCCGTACTTGACGTCGTGGGAGTGCAGGCGGAAGGCGTA
GTCCGAGTTGAGCAGCTTCAGGATGGAGCCGCAGGTGACCACGTTGGATT
CGGTGGCGGCTCCCCTGGAAATGCTGCCTACCAGCGCCAGTCCTGTAAGA
AGTAGTATGTGCTGCATGTCGACTGATAACT
BS14856.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11999-PA | 651 | CG11999-RA | 1..651 | 667..17 | 3255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:44:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11999-RA | 904 | CG11999-RA | 127..777 | 667..17 | 3255 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:44:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5353844..5354434 | 17..607 | 2955 | 100 | Plus |
| 3R | 32079331 | 3R | 5354561..5354621 | 607..667 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:44:15 has no hits.
BS14856.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:10 Download gff for
BS14856.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11999-PA | 1..651 | 17..667 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:56 Download gff for
BS14856.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11999-RA | 127..786 | 7..667 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:26:11 Download gff for
BS14856.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11999-RA | 127..786 | 7..667 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:26:11 Download gff for
BS14856.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5353835..5354433 | 7..606 | 99 | <- | Plus |
| 3R | 5354561..5354621 | 607..667 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:56 Download gff for
BS14856.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1179557..1180155 | 7..606 | 99 | <- | Plus |
| arm_3R | 1180283..1180343 | 607..667 | 100 | | Plus |
BS14856.5prime Sequence
681 bp (681 high quality bases) assembled on 2006-10-13
> BS14856.5prime
GAAGTTATCAGTCGACATGCAGCACATACTACTTCTTACAGGACTGGCGC
TGGTAGGCAGCATTTCCAGGGGAGCCGCCACCGAATCCAACGTGGTCACC
TGCGGCTCCATCCTGAAGCTGCTCAACTCGGACTACGCCTTCCGCCTGCA
CTCCCACGACGTCAAGTACGGATCTGGTTCCGGGCAGCAGTCGGTGACGG
GCGTGGAGCAGAAGGAGGACGTGAACAGCCACTGGGTGATCAAGGCGCAG
ACCGGCGAGCTTTGTGAAAGGGGCGAGCCCATCGCCTGCGGATCCACCGT
GCGACTGGAGCACCTGTCCACCAAGAAGAACCTGCACTCGCACCACTTTT
CGTCGCCGCTCTCAGGCGAGCAGGAGGTGTCCGCGTACGGAACGGATGGA
CTCGGCGACACCGGCGACCACTGGGAGGTGGTCTGCTCCAACGAGAACTG
GATGCGCAGTGCCCACGTTAGGCTGCGCCACATCGACACCGGCATGTACC
TGGGCATGTCCGGCCGCTCCTATGGCAGACCCATCTCCGGCCAAATGGAA
ATCGTTGGCGTCCACAAGCCGCAGCACGGAACGCGCTGGACCACGGCGGA
GGGCCTCTTTATCGTGCCCAAGGAGAAGAGCTCAACGCACGACGAGTACG
CCCACTCGGAGCTGTAGAAGCTTTCTAGACC
BS14856.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11999-PA | 651 | CG11999-RA | 1..651 | 17..667 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11999-RA | 904 | CG11999-RA | 127..777 | 17..667 | 3255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5353844..5354434 | 667..77 | 2955 | 100 | Minus |
| 3R | 32079331 | 3R | 5354561..5354621 | 77..17 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:24:37 has no hits.
BS14856.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:11 Download gff for
BS14856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11999-PA | 1..651 | 17..667 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:29:03 Download gff for
BS14856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11999-RA | 127..786 | 17..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:46 Download gff for
BS14856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11999-RA | 127..786 | 17..677 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:46 Download gff for
BS14856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5353835..5354433 | 78..677 | 99 | <- | Minus |
| 3R | 5354561..5354621 | 17..77 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:29:03 Download gff for
BS14856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1179557..1180155 | 78..677 | 99 | <- | Minus |
| arm_3R | 1180283..1180343 | 17..77 | 100 | | Minus |
BS14856.complete Sequence
683 bp assembled on 2006-11-01
GenBank Submission: FJ637806
> BS14856.complete
GAAGTTATCAGTCGACATGCAGCACATACTACTTCTTACAGGACTGGCGC
TGGTAGGCAGCATTTCCAGGGGAGCCGCCACCGAATCCAACGTGGTCACC
TGCGGCTCCATCCTGAAGCTGCTCAACTCGGACTACGCCTTCCGCCTGCA
CTCCCACGACGTCAAGTACGGATCTGGTTCCGGGCAGCAGTCGGTGACGG
GCGTGGAGCAGAAGGAGGACGTGAACAGCCACTGGGTGATCAAGGCGCAG
ACCGGCGAGCTTTGTGAAAGGGGCGAGCCCATCGCCTGCGGATCCACCGT
GCGACTGGAGCACCTGTCCACCAAGAAGAACCTGCACTCGCACCACTTTT
CGTCGCCGCTCTCAGGCGAGCAGGAGGTGTCCGCGTACGGAACGGATGGA
CTCGGCGACACCGGCGACCACTGGGAGGTGGTCTGCTCCAACGAGAACTG
GATGCGCAGTGCCCACGTTAGGCTGCGCCACATCGACACCGGCATGTACC
TGGGCATGTCCGGCCGCTCCTATGGCAGACCCATCTCCGGCCAAATGGAA
ATCGTTGGCGTCCACAAGCCGCAGCACGGAACGCGCTGGACCACGGCGGA
GGGCCTCTTTATCGTGCCCAAGGAGAAGAGCTCAACGCACGACGAGTACG
CCCACTCGGAGCTGTAGAAGCTTTCTAGACCAT
BS14856.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:01:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11999-RA | 651 | CG11999-PA | 1..651 | 17..667 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:01:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11999-RA | 904 | CG11999-RA | 127..777 | 17..667 | 3255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:01:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5353844..5354434 | 667..77 | 2955 | 100 | Minus |
| 3R | 32079331 | 3R | 5354561..5354621 | 77..17 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:01:48 has no hits.
BS14856.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:41 Download gff for
BS14856.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11999-RA | 1..651 | 17..667 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:27 Download gff for
BS14856.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11999-RA | 127..786 | 17..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:43:59 Download gff for
BS14856.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11999-RA | 127..777 | 17..667 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:42 Download gff for
BS14856.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11999-RA | 127..786 | 17..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:05 Download gff for
BS14856.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11999-RA | 127..777 | 17..667 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:05 Download gff for
BS14856.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5353844..5354433 | 78..667 | 100 | <- | Minus |
| 3R | 5354561..5354621 | 17..77 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:43:59 Download gff for
BS14856.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1179566..1180155 | 78..667 | 100 | <- | Minus |
| arm_3R | 1180283..1180343 | 17..77 | 100 | | Minus |
BS14856.pep Sequence
Translation from 16 to 666
> BS14856.pep
MQHILLLTGLALVGSISRGAATESNVVTCGSILKLLNSDYAFRLHSHDVK
YGSGSGQQSVTGVEQKEDVNSHWVIKAQTGELCERGEPIACGSTVRLEHL
STKKNLHSHHFSSPLSGEQEVSAYGTDGLGDTGDHWEVVCSNENWMRSAH
VRLRHIDTGMYLGMSGRSYGRPISGQMEIVGVHKPQHGTRWTTAEGLFIV
PKEKSSTHDEYAHSEL*
BS14856.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11999-PA | 216 | CG11999-PA | 1..216 | 1..216 | 1149 | 100 | Plus |
