Clone BS14858 Report

Search the DGRC for BS14858

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:148
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptNpc2a-RA
Protein status:BS14858.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14858.5prime Sequence

477 bp (477 high quality bases) assembled on 2006-10-13

> BS14858.5prime
GAAGTTATCAGTCGACATGCTGAGGTACGCGGTAATTGCCTGTGCTGCAC
TGGTGGTCTTCGCCGGAGCCCTCGAGTTCAGCGATTGCGGATCGAAGACG
GGCAAGTTCACCCGGGTGGCCATCGAGGGCTGCGACACCACCAAGGCGGA
GTGCATCCTCAAGAGGAACACCACGGTCAGCTTCTCCATCGACTTCGCCC
TGGCCGAGGAGGCAACGGCGGTGAAGACAGTCGTCCACGGCAAGGTCCTG
GGCATCGAGATGCCCTTCCCGCTGGCCAATCCCGATGCCTGTGTGGACAG
TGGTCTGAAGTGCCCGTTGGAGAAGGACGAGTCGTACCGCTACACGGCCA
CCCTGCCGGTGCTGAGATCCTACCCCAAAGTGTCCGTGCTGGTCAAGTGG
GAGCTGCAGGATCAGGACGGAGCGGACATCATCTGCGTCGAGATTCCCGC
TAAAATTCAGTAGAAGCTTTCTAGACC

BS14858.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG7291-PA 447 NPC2-RA 1..447 17..463 2235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:25:15
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2a-RA 651 CG7291-RA 100..546 17..463 2235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1988389..1988835 17..463 2235 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:25:12 has no hits.

BS14858.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:12 Download gff for BS14858.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7291-PA 1..447 17..463 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:29:12 Download gff for BS14858.5prime
Subject Subject Range Query Range Percent Splice Strand
Npc2a-RA 95..552 10..471 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:33 Download gff for BS14858.5prime
Subject Subject Range Query Range Percent Splice Strand
Npc2a-RA 95..552 10..471 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:33 Download gff for BS14858.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1988384..1988841 10..471 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:29:12 Download gff for BS14858.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1988384..1988841 10..471 98   Plus

BS14858.3prime Sequence

477 bp (477 high quality bases) assembled on 2006-10-13

> BS14858.3prime
ATGGTCTAGAAAGCTTCTACTGAATTTTAGCGGGAATCTCGACGCAGATG
ATGTCCGCTCCGTCCTGATCCTGCAGCTCCCACTTGACCAGCACGGACAC
TTTGGGGTAGGATCTCAGCACCGGCAGGGTGGCCGTGTAGCGGTACGACT
CGTCCTTCTCCAACGGGCACTTCAGACCACTGTCCACACAGGCATCGGGA
TTGGCCAGCGGGAAGGGCATCTCGATGCCCAGGACCTTGCCGTGGACGAC
TGTCTTCACCGCCGTTGCCTCCTCGGCCAGGGCGAAGTCGATGGAGAAGC
TGACCGTGGTGTTCCTCTTGAGGATGCACTCCGCCTTGGTGGTGTCGCAG
CCCTCGATGGCCACCCGGGTGAACTTGCCCGTCTTCGATCCGCAATCGCT
GAACTCGAGGGCTCCGGCGAAGACCACCAGTGCAGCACAGGCAATTACCG
CGTACCTCAGCATGTCGACTGATAACT

BS14858.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG7291-PA 447 NPC2-RA 1..447 463..17 2235 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:24:55
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2a-RA 651 CG7291-RA 100..546 463..17 2235 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1988389..1988835 463..17 2235 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:24:51 has no hits.

BS14858.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:12 Download gff for BS14858.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7291-PA 1..447 17..463 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:25:35 Download gff for BS14858.3prime
Subject Subject Range Query Range Percent Splice Strand
Npc2a-RA 95..552 9..470 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:26 Download gff for BS14858.3prime
Subject Subject Range Query Range Percent Splice Strand
Npc2a-RA 95..552 9..470 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:26 Download gff for BS14858.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1988384..1988841 9..470 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:25:35 Download gff for BS14858.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1988384..1988841 9..470 98   Minus

BS14858.complete Sequence

479 bp assembled on 2006-11-01

GenBank Submission: FJ637807

> BS14858.complete
GAAGTTATCAGTCGACATGCTGAGGTACGCGGTAATTGCCTGTGCTGCAC
TGGTGGTCTTCGCCGGAGCCCTCGAGTTCAGCGATTGCGGATCGAAGACG
GGCAAGTTCACCCGGGTGGCCATCGAGGGCTGCGACACCACCAAGGCGGA
GTGCATCCTCAAGAGGAACACCACGGTCAGCTTCTCCATCGACTTCGCCC
TGGCCGAGGAGGCAACGGCGGTGAAGACAGTCGTCCACGGCAAGGTCCTG
GGCATCGAGATGCCCTTCCCGCTGGCCAATCCCGATGCCTGTGTGGACAG
TGGTCTGAAGTGCCCGTTGGAGAAGGACGAGTCGTACCGCTACACGGCCA
CCCTGCCGGTGCTGAGATCCTACCCCAAAGTGTCCGTGCTGGTCAAGTGG
GAGCTGCAGGATCAGGACGGAGCGGACATCATCTGCGTCGAGATTCCCGC
TAAAATTCAGTAGAAGCTTTCTAGACCAT

BS14858.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:46:23
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2a-RA 447 CG7291-PA 1..447 17..463 2235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:46:24
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2a-RA 651 CG7291-RA 100..546 17..463 2235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:46:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1988389..1988835 17..463 2235 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:46:22 has no hits.

BS14858.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:45 Download gff for BS14858.complete
Subject Subject Range Query Range Percent Splice Strand
NPC2-RA 1..447 17..463 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:31 Download gff for BS14858.complete
Subject Subject Range Query Range Percent Splice Strand
NPC2-RA 94..551 10..471 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:21 Download gff for BS14858.complete
Subject Subject Range Query Range Percent Splice Strand
Npc2a-RA 100..546 17..463 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:45 Download gff for BS14858.complete
Subject Subject Range Query Range Percent Splice Strand
NPC2-RA 94..551 10..471 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:54 Download gff for BS14858.complete
Subject Subject Range Query Range Percent Splice Strand
Npc2a-RA 100..546 17..463 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:54 Download gff for BS14858.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1988389..1988835 17..463 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:21 Download gff for BS14858.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1988389..1988835 17..463 100   Plus

BS14858.pep Sequence

Translation from 16 to 462

> BS14858.pep
MLRYAVIACAALVVFAGALEFSDCGSKTGKFTRVAIEGCDTTKAECILKR
NTTVSFSIDFALAEEATAVKTVVHGKVLGIEMPFPLANPDACVDSGLKCP
LEKDESYRYTATLPVLRSYPKVSVLVKWELQDQDGADIICVEIPAKIQ*

BS14858.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2a-PA 148 CG7291-PA 1..148 1..148 762 100 Plus
Npc2b-PA 159 CG3153-PA 12..158 10..148 178 32.7 Plus
Npc2b-PB 159 CG3153-PB 12..158 10..148 178 32.7 Plus