Clone Sequence Records
BS14858.5prime Sequence
477 bp (477 high quality bases) assembled on 2006-10-13
> BS14858.5prime
GAAGTTATCAGTCGACATGCTGAGGTACGCGGTAATTGCCTGTGCTGCAC
TGGTGGTCTTCGCCGGAGCCCTCGAGTTCAGCGATTGCGGATCGAAGACG
GGCAAGTTCACCCGGGTGGCCATCGAGGGCTGCGACACCACCAAGGCGGA
GTGCATCCTCAAGAGGAACACCACGGTCAGCTTCTCCATCGACTTCGCCC
TGGCCGAGGAGGCAACGGCGGTGAAGACAGTCGTCCACGGCAAGGTCCTG
GGCATCGAGATGCCCTTCCCGCTGGCCAATCCCGATGCCTGTGTGGACAG
TGGTCTGAAGTGCCCGTTGGAGAAGGACGAGTCGTACCGCTACACGGCCA
CCCTGCCGGTGCTGAGATCCTACCCCAAAGTGTCCGTGCTGGTCAAGTGG
GAGCTGCAGGATCAGGACGGAGCGGACATCATCTGCGTCGAGATTCCCGC
TAAAATTCAGTAGAAGCTTTCTAGACC
BS14858.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7291-PA | 447 | NPC2-RA | 1..447 | 17..463 | 2235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:25:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2a-RA | 651 | CG7291-RA | 100..546 | 17..463 | 2235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:25:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1988389..1988835 | 17..463 | 2235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:25:12 has no hits.
BS14858.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:12 Download gff for
BS14858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7291-PA | 1..447 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:29:12 Download gff for
BS14858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2a-RA | 95..552 | 10..471 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:33 Download gff for
BS14858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2a-RA | 95..552 | 10..471 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:33 Download gff for
BS14858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1988384..1988841 | 10..471 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:29:12 Download gff for
BS14858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1988384..1988841 | 10..471 | 98 | | Plus |
BS14858.3prime Sequence
477 bp (477 high quality bases) assembled on 2006-10-13
> BS14858.3prime
ATGGTCTAGAAAGCTTCTACTGAATTTTAGCGGGAATCTCGACGCAGATG
ATGTCCGCTCCGTCCTGATCCTGCAGCTCCCACTTGACCAGCACGGACAC
TTTGGGGTAGGATCTCAGCACCGGCAGGGTGGCCGTGTAGCGGTACGACT
CGTCCTTCTCCAACGGGCACTTCAGACCACTGTCCACACAGGCATCGGGA
TTGGCCAGCGGGAAGGGCATCTCGATGCCCAGGACCTTGCCGTGGACGAC
TGTCTTCACCGCCGTTGCCTCCTCGGCCAGGGCGAAGTCGATGGAGAAGC
TGACCGTGGTGTTCCTCTTGAGGATGCACTCCGCCTTGGTGGTGTCGCAG
CCCTCGATGGCCACCCGGGTGAACTTGCCCGTCTTCGATCCGCAATCGCT
GAACTCGAGGGCTCCGGCGAAGACCACCAGTGCAGCACAGGCAATTACCG
CGTACCTCAGCATGTCGACTGATAACT
BS14858.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7291-PA | 447 | NPC2-RA | 1..447 | 463..17 | 2235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:24:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2a-RA | 651 | CG7291-RA | 100..546 | 463..17 | 2235 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:24:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1988389..1988835 | 463..17 | 2235 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:24:51 has no hits.
BS14858.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:12 Download gff for
BS14858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7291-PA | 1..447 | 17..463 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:25:35 Download gff for
BS14858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2a-RA | 95..552 | 9..470 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:26 Download gff for
BS14858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2a-RA | 95..552 | 9..470 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:26 Download gff for
BS14858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1988384..1988841 | 9..470 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:25:35 Download gff for
BS14858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1988384..1988841 | 9..470 | 98 | | Minus |
BS14858.complete Sequence
479 bp assembled on 2006-11-01
GenBank Submission: FJ637807
> BS14858.complete
GAAGTTATCAGTCGACATGCTGAGGTACGCGGTAATTGCCTGTGCTGCAC
TGGTGGTCTTCGCCGGAGCCCTCGAGTTCAGCGATTGCGGATCGAAGACG
GGCAAGTTCACCCGGGTGGCCATCGAGGGCTGCGACACCACCAAGGCGGA
GTGCATCCTCAAGAGGAACACCACGGTCAGCTTCTCCATCGACTTCGCCC
TGGCCGAGGAGGCAACGGCGGTGAAGACAGTCGTCCACGGCAAGGTCCTG
GGCATCGAGATGCCCTTCCCGCTGGCCAATCCCGATGCCTGTGTGGACAG
TGGTCTGAAGTGCCCGTTGGAGAAGGACGAGTCGTACCGCTACACGGCCA
CCCTGCCGGTGCTGAGATCCTACCCCAAAGTGTCCGTGCTGGTCAAGTGG
GAGCTGCAGGATCAGGACGGAGCGGACATCATCTGCGTCGAGATTCCCGC
TAAAATTCAGTAGAAGCTTTCTAGACCAT
BS14858.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:46:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2a-RA | 447 | CG7291-PA | 1..447 | 17..463 | 2235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:46:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2a-RA | 651 | CG7291-RA | 100..546 | 17..463 | 2235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:46:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1988389..1988835 | 17..463 | 2235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:46:22 has no hits.
BS14858.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:45 Download gff for
BS14858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NPC2-RA | 1..447 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:31 Download gff for
BS14858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NPC2-RA | 94..551 | 10..471 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:21 Download gff for
BS14858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2a-RA | 100..546 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:45 Download gff for
BS14858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NPC2-RA | 94..551 | 10..471 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:54 Download gff for
BS14858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2a-RA | 100..546 | 17..463 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:54 Download gff for
BS14858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1988389..1988835 | 17..463 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:21 Download gff for
BS14858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1988389..1988835 | 17..463 | 100 | | Plus |
BS14858.pep Sequence
Translation from 16 to 462
> BS14858.pep
MLRYAVIACAALVVFAGALEFSDCGSKTGKFTRVAIEGCDTTKAECILKR
NTTVSFSIDFALAEEATAVKTVVHGKVLGIEMPFPLANPDACVDSGLKCP
LEKDESYRYTATLPVLRSYPKVSVLVKWELQDQDGADIICVEIPAKIQ*
BS14858.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:40:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2a-PA | 148 | CG7291-PA | 1..148 | 1..148 | 762 | 100 | Plus |
Npc2b-PA | 159 | CG3153-PA | 12..158 | 10..148 | 178 | 32.7 | Plus |
Npc2b-PB | 159 | CG3153-PB | 12..158 | 10..148 | 178 | 32.7 | Plus |