Clone Sequence Records
BS14863.3prime Sequence
832 bp (716 high quality bases) assembled on 2006-10-13
> BS14863.3prime
ATGGTCTAGAAAGCTTTTACATGGATGTTCCGTTCTGGGAGGAGGCATCG
CTGATGCGACGTGACAGCGTCGTCTTGCGGCTAATGGACTTGGTGTTGCC
GATCTGATTGGCGCTGGTATGATAGTTGGAGCTCGAACCGCCGCTGGTCG
GGGTGTCAGTGTTCAGTGATTCCACAGTTCGCATCGCCGAACGCTTCAGG
GAGCCAGTCACCTCGTGCGGCTCCTGGTAGCCGGAGTCCATGTCATCATG
GTAGGAGTCCATCAATGGCGTGGGATCCTCATAGTCGTAGTCAACGAAGC
CATTGTTGTCAAAGGACTTGACAAACGACTGCGAATGCTTCTCGTAGCCA
CGGAACACCTGGCTGTGCGACTTGCCGCGATAGTCCACCGATTCGTAGTG
CCCATCCTGGGAGTTCTCGATGATGAAGTGCCTGGTGCCGTGGGGCGTTA
GTGTGGCCCACAGTAGACGGCTATCGTTGACCAGCTGGCTCTGGAGCAGA
TCCCTACTGTTGGCCGTGGCGCAGGGATAAAGAATTCCGCCGGATGTGAA
GGCATTGGATTTGGTCGCCTCGCCGAGGGCATTAATGGCCGTCTGCTTGA
TATTGGCGTCGTGGTACGAGAAAAAGGAGCTGTCTCTGCACCGCATCACG
ATGAGGGCCAGGAAGCAGCCGAACACAAAGATCCCGATGCAGGACGAGAC
AAACAGCCAGACGCTCTCCCGACTCTTGGAATCACTTCTCACCAGCTCCA
TTAGCGCGTTTCCGCTCTCGTTGTGCTGCATCCCATGGCCGCACATGAAG
GCGGCAAAGCACGGCTGCCACTCATTGGAGGG
BS14863.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9919-PA | 957 | CG9919-RA | 142..957 | 832..17 | 4030 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:21:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9919-RA | 1647 | CG9919-RA | 198..1014 | 832..16 | 4055 | 99.8 | Minus |
CG9919-RB | 1644 | CG9919-RB | 198..1011 | 832..16 | 4000 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:21:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16329515..16329830 | 317..632 | 1580 | 100 | Plus |
X | 23542271 | X | 16329070..16329372 | 16..318 | 1515 | 100 | Plus |
X | 23542271 | X | 16329895..16330094 | 633..832 | 970 | 99 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:21:26 has no hits.
BS14863.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:15 Download gff for
BS14863.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9919-PA | 142..957 | 17..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:20 Download gff for
BS14863.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9919-RA | 198..1022 | 8..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:15 Download gff for
BS14863.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9919-RA | 198..1022 | 8..832 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:15 Download gff for
BS14863.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16329062..16329370 | 8..316 | 98 | <- | Plus |
X | 16329515..16329830 | 317..632 | 100 | <- | Plus |
X | 16329895..16330094 | 633..832 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:20 Download gff for
BS14863.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16223095..16223403 | 8..316 | 98 | <- | Plus |
arm_X | 16223548..16223863 | 317..632 | 100 | <- | Plus |
arm_X | 16223928..16224127 | 633..832 | 99 | | Plus |
BS14863.5prime Sequence
854 bp (797 high quality bases) assembled on 2006-10-13
> BS14863.5prime
GAAGTTATCAGTCGACATGATGAACATGCTCTTTGGCAATTGTGTGGGCA
GCTGTGACCAGCTGGCCGGTCCACCGCCGGACTTTATATTATCGATGCCG
CCGCCGCCGCTGCCGTCCTTTCTAATCTCAAAGCCGGCGACGGTGGACAT
CCTGGTGCCCTCCAATGAGTCGCAGCCGTGCTTTGCCGCCTTCATGTGCG
GCCATGGGATGCAGCACAACGAGAGCGGAAACGCGCTAATGGAGCTGGTG
AGAAGTGATTCCAAGAGTCTGGAGAGCGTCTGGCTGTTTGTCTCGTCCTG
CATCGGGATCTTTGTGTTCGGCTGCTTCCTGGCCCTCATCGTGATGCGGT
GCAGAGACAGCTCCTTTTTCTCGTACCACGACGCCAATATCAAGCAGACG
GCCATTAATGCCCTCGGCGAGGCGACCAAATCCAATGCCTTCACATCCGG
CGGAATTCTTTATCCCTGCGCCACGGCCAACAGTAGGGATCTGCTCCAGA
GCCAGCTGGTCAACGATAGCCGTCTACTGTGGGCCACACTAACGCCCCAC
GGCACCAGGCACTTCATCATCGAGAACTCCCAGGATGGGCACTACGAATC
GGTGGACTATCGCGGCAAGTCGCACAGCCAGGTGTTCCGTGGCTACGAGA
AGCATTCGCAGTCGTTTGTCAAGTCCTTTGACAACAATGGCTTCGTTGAC
TACGACTATGAGGATCCCACGCCATTGATGGACTCCTACCATGATGACAT
GGACTCCGGCTACCAGGAGCCGCACGAGGTGACTGGCTCCCTGAAGCGTT
CGGCGATGCGAACTGTGGAATCACTGAACACTGACACCCCGACCAGCGGC
GGTT
BS14863.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9919-PA | 957 | CG9919-RA | 1..838 | 17..854 | 4190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:03:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9919-RA | 1647 | CG9919-RA | 56..894 | 16..854 | 4195 | 100 | Plus |
CG9919-RB | 1644 | CG9919-RB | 56..891 | 16..854 | 4140 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:03:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16329895..16330236 | 357..16 | 1710 | 100 | Minus |
X | 23542271 | X | 16329515..16329830 | 673..358 | 1580 | 100 | Minus |
X | 23542271 | X | 16329190..16329372 | 854..672 | 915 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:03:39 has no hits.
BS14863.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:16 Download gff for
BS14863.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9919-PA | 1..838 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:23 Download gff for
BS14863.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9919-RA | 51..894 | 10..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:55 Download gff for
BS14863.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9919-RA | 51..894 | 10..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:55 Download gff for
BS14863.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16329190..16329370 | 674..854 | 100 | <- | Minus |
X | 16329515..16329830 | 358..673 | 100 | <- | Minus |
X | 16329895..16330241 | 10..357 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:23 Download gff for
BS14863.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16223223..16223403 | 674..854 | 100 | <- | Minus |
arm_X | 16223548..16223863 | 358..673 | 100 | <- | Minus |
arm_X | 16223928..16224274 | 10..357 | 99 | | Minus |
BS14863.complete Sequence
989 bp assembled on 2006-11-01
GenBank Submission: FJ637810
> BS14863.complete
GAAGTTATCAGTCGACATGATGAACATGCTCTTTGGCAATTGTGTGGGCA
GCTGTGACCAGCTGGCCGGTCCACCGCCGGACTTTATATTATCGATGCCG
CCGCCGCCGCTGCCGTCCTTTCTAATCTCAAAGCCGGCGACGGTGGACAT
CCTGGTGCCCTCCAATGAGTCGCAGCCGTGCTTTGCCGCCTTCATGTGCG
GCCATGGGATGCAGCACAACGAGAGCGGAAACGCGCTAATGGAGCTGGTG
AGAAGTGATTCCAAGAGTCTGGAGAGCGTCTGGCTGTTTGTCTCGTCCTG
CATCGGGATCTTTGTGTTCGGCTGCTTCCTGGCCCTCATCGTGATGCGGT
GCAGAGACAGCTCCTTTTTCTCGTACCACGACGCCAATATCAAGCAGACG
GCCATTAATGCCCTCGGCGAGGCGACCAAATCCAATGCCTTCACATCCGG
CGGAATTCTTTATCCCTGCGCCACGGCCAACAGTAGGGATCTGCTCCAGA
GCCAGCTGGTCAACGATAGCCGTCTACTGTGGGCCACACTAACGCCCCAC
GGCACCAGGCACTTCATCATCGAGAACTCCCAGGATGGGCACTACGAATC
GGTGGACTATCGCGGCAAGTCGCACAGCCAGGTGTTCCGTGGCTACGAGA
AGCATTCGCAGTCGTTTGTCAAGTCCTTTGACAACAATGGCTTCGTTGAC
TACGACTATGAGGATCCCACGCCATTGATGGACTCCTACCATGATGACAT
GGACTCCGGCTACCAGGAGCCGCACGAGGTGACTGGCTCCCTGAAGCGTT
CGGCGATGCGAACTGTGGAATCACTGAACACTGACACCCCGACCAGCGGC
GGTTCGAGCTCCAACTATCATACCAGCGCCAATCAGATCGGCAACACCAA
GTCCATTAGCCGCAAGACGACGCTGTCACGTCGCATCAGCGATGCCTCCT
CCCAGAACGGAACATCCATGTAAAAGCTTTCTAGACCAT
BS14863.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:19:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9919-RA | 957 | CG9919-PA | 1..957 | 17..973 | 4785 | 100 | Plus |
CG9919-RB | 954 | CG9919-PB | 1..954 | 17..973 | 4705 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9919-RA | 1647 | CG9919-RA | 56..1014 | 16..974 | 4795 | 100 | Plus |
CG9919-RB | 1644 | CG9919-RB | 56..1011 | 16..974 | 4715 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16329895..16330236 | 357..16 | 1710 | 100 | Minus |
X | 23542271 | X | 16329515..16329830 | 673..358 | 1580 | 100 | Minus |
X | 23542271 | X | 16329070..16329372 | 974..672 | 1515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:19:43 has no hits.
BS14863.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:47 Download gff for
BS14863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9919-RA | 1..957 | 17..973 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:34 Download gff for
BS14863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9919-RA | 32..1003 | 10..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:01 Download gff for
BS14863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9919-RA | 57..1011 | 17..971 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:47 Download gff for
BS14863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9919-RA | 32..1003 | 10..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:49 Download gff for
BS14863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9919-RA | 57..1011 | 17..971 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:49 Download gff for
BS14863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16329073..16329370 | 674..971 | 100 | <- | Minus |
X | 16329515..16329830 | 358..673 | 100 | <- | Minus |
X | 16329895..16330235 | 17..357 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:01 Download gff for
BS14863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16223928..16224268 | 17..357 | 100 | | Minus |
arm_X | 16223106..16223403 | 674..971 | 100 | <- | Minus |
arm_X | 16223548..16223863 | 358..673 | 100 | <- | Minus |
BS14863.pep Sequence
Translation from 16 to 972
> BS14863.pep
MMNMLFGNCVGSCDQLAGPPPDFILSMPPPPLPSFLISKPATVDILVPSN
ESQPCFAAFMCGHGMQHNESGNALMELVRSDSKSLESVWLFVSSCIGIFV
FGCFLALIVMRCRDSSFFSYHDANIKQTAINALGEATKSNAFTSGGILYP
CATANSRDLLQSQLVNDSRLLWATLTPHGTRHFIIENSQDGHYESVDYRG
KSHSQVFRGYEKHSQSFVKSFDNNGFVDYDYEDPTPLMDSYHDDMDSGYQ
EPHEVTGSLKRSAMRTVESLNTDTPTSGGSSSNYHTSANQIGNTKSISRK
TTLSRRISDASSQNGTSM*
BS14863.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9919-PA | 318 | CG9919-PA | 1..318 | 1..318 | 1683 | 100 | Plus |
CG9919-PB | 317 | CG9919-PB | 1..317 | 1..318 | 1667 | 99.7 | Plus |