Clone Sequence Records
BS14866.3prime Sequence
375 bp (375 high quality bases) assembled on 2006-10-13
> BS14866.3prime
ATGGTCTAGAAAGCTTTTATTGGAAATATTTTTGCAGAGCTCCTGTCTCG
AACATTCGTTTGATGTCAGTGCCACCGCCAATGAATTTGCCATCGATAAA
GACGCGGGGAACCGTTCTGGCACCGGTAATCTCGCCCAGAACTGCCTGAA
TTTCGTTGCCATCGGGATTTCCATCGAGTTCTATTATGGTGGCGTCCACA
TTGAGCTTTTTGAAGGGCTCTTTGGCCATCGTGCAGTAGGGACAGTAGGT
CTTGCTGAATATCACCACTTTGTTGCTGGCAATGGTGTTTTCAACGAATT
TCGCCTGCTTGGTGGACATGTCGACTATTGGGGATCTCAAAGCGGATCCA
ACTGCACCCATGTCGACTGATAACT
BS14866.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6852-PA | 345 | CG6852-RA | 1..345 | 361..17 | 1725 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:13:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6852-RC | 607 | CG6852-RC | 178..523 | 361..16 | 1730 | 100 | Minus |
CG6852-RA | 595 | CG6852-RA | 166..511 | 361..16 | 1730 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:12:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18869503..18869646 | 361..218 | 720 | 100 | Minus |
3L | 28110227 | 3L | 18869705..18869813 | 219..111 | 545 | 100 | Minus |
3L | 28110227 | 3L | 18869876..18869973 | 113..16 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:13:01 has no hits.
BS14866.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:17 Download gff for
BS14866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6852-PA | 1..345 | 17..361 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:17:12 Download gff for
BS14866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6852-RA | 158..523 | 4..366 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:35 Download gff for
BS14866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6852-RA | 158..523 | 4..366 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:35 Download gff for
BS14866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18869707..18869811 | 113..217 | 100 | -> | Minus |
3L | 18869877..18869985 | 4..112 | 95 | | Minus |
3L | 18869495..18869646 | 218..366 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:17:12 Download gff for
BS14866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18862977..18863085 | 4..112 | 95 | | Minus |
arm_3L | 18862595..18862746 | 218..366 | 98 | -> | Minus |
arm_3L | 18862807..18862911 | 113..217 | 100 | -> | Minus |
BS14866.5prime Sequence
375 bp (375 high quality bases) assembled on 2006-10-13
> BS14866.5prime
GAAGTTATCAGTCGACATGGGTGCAGTTGGATCCGCTTTGAGATCCCCAA
TAGTCGACATGTCCACCAAGCAGGCGAAATTCGTTGAAAACACCATTGCC
AGCAACAAAGTGGTGATATTCAGCAAGACCTACTGTCCCTACTGCACGAT
GGCCAAAGAGCCCTTCAAAAAGCTCAATGTGGACGCCACCATAATAGAAC
TCGATGGAAATCCCGATGGCAACGAAATTCAGGCAGTTCTGGGCGAGATT
ACCGGTGCCAGAACGGTTCCCCGCGTCTTTATCGATGGCAAATTCATTGG
CGGTGGCACTGACATCAAACGAATGTTCGAGACAGGAGCTCTGCAAAAAT
ATTTCCAATAAAAGCTTTCTAGACC
BS14866.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6852-PA | 345 | CG6852-RA | 1..345 | 17..361 | 1725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:26:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6852-RC | 607 | CG6852-RC | 178..523 | 17..362 | 1730 | 100 | Plus |
CG6852-RA | 595 | CG6852-RA | 166..511 | 17..362 | 1730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:26:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18869503..18869646 | 17..160 | 720 | 100 | Plus |
3L | 28110227 | 3L | 18869705..18869813 | 159..267 | 545 | 100 | Plus |
3L | 28110227 | 3L | 18869876..18869973 | 265..362 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:26:11 has no hits.
BS14866.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:17 Download gff for
BS14866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6852-PA | 1..345 | 17..361 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:25:46 Download gff for
BS14866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6852-RA | 158..523 | 12..374 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:36 Download gff for
BS14866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6852-RA | 158..523 | 12..374 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:36 Download gff for
BS14866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18869495..18869646 | 12..160 | 98 | -> | Plus |
3L | 18869707..18869811 | 161..265 | 100 | -> | Plus |
3L | 18869877..18869985 | 266..374 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:25:46 Download gff for
BS14866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18862595..18862746 | 12..160 | 98 | -> | Plus |
arm_3L | 18862807..18862911 | 161..265 | 100 | -> | Plus |
arm_3L | 18862977..18863085 | 266..374 | 95 | | Plus |
BS14866.complete Sequence
377 bp assembled on 2006-11-01
GenBank Submission: FJ637811
> BS14866.complete
GAAGTTATCAGTCGACATGGGTGCAGTTGGATCCGCTTTGAGATCCCCAA
TAGTCGACATGTCCACCAAGCAGGCGAAATTCGTTGAAAACACCATTGCC
AGCAACAAAGTGGTGATATTCAGCAAGACCTACTGTCCCTACTGCACGAT
GGCCAAAGAGCCCTTCAAAAAGCTCAATGTGGACGCCACCATAATAGAAC
TCGATGGAAATCCCGATGGCAACGAAATTCAGGCAGTTCTGGGCGAGATT
ACCGGTGCCAGAACGGTTCCCCGCGTCTTTATCGATGGCAAATTCATTGG
CGGTGGCACTGACATCAAACGAATGTTCGAGACAGGAGCTCTGCAAAAAT
ATTTCCAATAAAAGCTTTCTAGACCAT
BS14866.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:44:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6852-RC | 345 | CG6852-PC | 1..345 | 17..361 | 1725 | 100 | Plus |
CG6852-RA | 345 | CG6852-PA | 1..345 | 17..361 | 1725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:44:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6852-RC | 607 | CG6852-RC | 178..523 | 17..362 | 1730 | 100 | Plus |
CG6852-RA | 595 | CG6852-RA | 166..511 | 17..362 | 1730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:44:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18869503..18869646 | 17..160 | 720 | 100 | Plus |
3L | 28110227 | 3L | 18869705..18869813 | 159..267 | 545 | 100 | Plus |
3L | 28110227 | 3L | 18869876..18869973 | 265..362 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:44:12 has no hits.
BS14866.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:48 Download gff for
BS14866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6852-RA | 1..345 | 17..361 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:35 Download gff for
BS14866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6852-RA | 40..405 | 12..374 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:11 Download gff for
BS14866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6852-RA | 166..508 | 17..359 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:48 Download gff for
BS14866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6852-RA | 40..405 | 12..374 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:41 Download gff for
BS14866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6852-RA | 166..508 | 17..359 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:41 Download gff for
BS14866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18869503..18869646 | 17..160 | 100 | -> | Plus |
3L | 18869707..18869811 | 161..265 | 100 | -> | Plus |
3L | 18869877..18869970 | 266..359 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:11 Download gff for
BS14866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18862603..18862746 | 17..160 | 100 | -> | Plus |
arm_3L | 18862807..18862911 | 161..265 | 100 | -> | Plus |
arm_3L | 18862977..18863070 | 266..359 | 100 | | Plus |
BS14866.pep Sequence
Translation from 16 to 360
> BS14866.pep
MGAVGSALRSPIVDMSTKQAKFVENTIASNKVVIFSKTYCPYCTMAKEPF
KKLNVDATIIELDGNPDGNEIQAVLGEITGARTVPRVFIDGKFIGGGTDI
KRMFETGALQKYFQ*
BS14866.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6852-PC | 114 | CG6852-PC | 1..114 | 1..114 | 585 | 100 | Plus |
CG6852-PA | 114 | CG6852-PA | 1..114 | 1..114 | 585 | 100 | Plus |
Grx-1-PA | 116 | CG7975-PA | 1..116 | 1..114 | 415 | 68.1 | Plus |