Clone BS14866 Report

Search the DGRC for BS14866

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:148
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptCG6852-RA
Protein status:BS14866.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14866.3prime Sequence

375 bp (375 high quality bases) assembled on 2006-10-13

> BS14866.3prime
ATGGTCTAGAAAGCTTTTATTGGAAATATTTTTGCAGAGCTCCTGTCTCG
AACATTCGTTTGATGTCAGTGCCACCGCCAATGAATTTGCCATCGATAAA
GACGCGGGGAACCGTTCTGGCACCGGTAATCTCGCCCAGAACTGCCTGAA
TTTCGTTGCCATCGGGATTTCCATCGAGTTCTATTATGGTGGCGTCCACA
TTGAGCTTTTTGAAGGGCTCTTTGGCCATCGTGCAGTAGGGACAGTAGGT
CTTGCTGAATATCACCACTTTGTTGCTGGCAATGGTGTTTTCAACGAATT
TCGCCTGCTTGGTGGACATGTCGACTATTGGGGATCTCAAAGCGGATCCA
ACTGCACCCATGTCGACTGATAACT

BS14866.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG6852-PA 345 CG6852-RA 1..345 361..17 1725 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG6852-RC 607 CG6852-RC 178..523 361..16 1730 100 Minus
CG6852-RA 595 CG6852-RA 166..511 361..16 1730 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:12:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18869503..18869646 361..218 720 100 Minus
3L 28110227 3L 18869705..18869813 219..111 545 100 Minus
3L 28110227 3L 18869876..18869973 113..16 490 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:13:01 has no hits.

BS14866.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:17 Download gff for BS14866.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6852-PA 1..345 17..361 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:17:12 Download gff for BS14866.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6852-RA 158..523 4..366 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:35 Download gff for BS14866.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6852-RA 158..523 4..366 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:35 Download gff for BS14866.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 18869707..18869811 113..217 100 -> Minus
3L 18869877..18869985 4..112 95   Minus
3L 18869495..18869646 218..366 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:17:12 Download gff for BS14866.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18862977..18863085 4..112 95   Minus
arm_3L 18862595..18862746 218..366 98 -> Minus
arm_3L 18862807..18862911 113..217 100 -> Minus

BS14866.5prime Sequence

375 bp (375 high quality bases) assembled on 2006-10-13

> BS14866.5prime
GAAGTTATCAGTCGACATGGGTGCAGTTGGATCCGCTTTGAGATCCCCAA
TAGTCGACATGTCCACCAAGCAGGCGAAATTCGTTGAAAACACCATTGCC
AGCAACAAAGTGGTGATATTCAGCAAGACCTACTGTCCCTACTGCACGAT
GGCCAAAGAGCCCTTCAAAAAGCTCAATGTGGACGCCACCATAATAGAAC
TCGATGGAAATCCCGATGGCAACGAAATTCAGGCAGTTCTGGGCGAGATT
ACCGGTGCCAGAACGGTTCCCCGCGTCTTTATCGATGGCAAATTCATTGG
CGGTGGCACTGACATCAAACGAATGTTCGAGACAGGAGCTCTGCAAAAAT
ATTTCCAATAAAAGCTTTCTAGACC

BS14866.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG6852-PA 345 CG6852-RA 1..345 17..361 1725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:26:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6852-RC 607 CG6852-RC 178..523 17..362 1730 100 Plus
CG6852-RA 595 CG6852-RA 166..511 17..362 1730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18869503..18869646 17..160 720 100 Plus
3L 28110227 3L 18869705..18869813 159..267 545 100 Plus
3L 28110227 3L 18869876..18869973 265..362 490 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:26:11 has no hits.

BS14866.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:17 Download gff for BS14866.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6852-PA 1..345 17..361 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:25:46 Download gff for BS14866.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6852-RA 158..523 12..374 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:36 Download gff for BS14866.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6852-RA 158..523 12..374 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:36 Download gff for BS14866.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18869495..18869646 12..160 98 -> Plus
3L 18869707..18869811 161..265 100 -> Plus
3L 18869877..18869985 266..374 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:25:46 Download gff for BS14866.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18862595..18862746 12..160 98 -> Plus
arm_3L 18862807..18862911 161..265 100 -> Plus
arm_3L 18862977..18863085 266..374 95   Plus

BS14866.complete Sequence

377 bp assembled on 2006-11-01

GenBank Submission: FJ637811

> BS14866.complete
GAAGTTATCAGTCGACATGGGTGCAGTTGGATCCGCTTTGAGATCCCCAA
TAGTCGACATGTCCACCAAGCAGGCGAAATTCGTTGAAAACACCATTGCC
AGCAACAAAGTGGTGATATTCAGCAAGACCTACTGTCCCTACTGCACGAT
GGCCAAAGAGCCCTTCAAAAAGCTCAATGTGGACGCCACCATAATAGAAC
TCGATGGAAATCCCGATGGCAACGAAATTCAGGCAGTTCTGGGCGAGATT
ACCGGTGCCAGAACGGTTCCCCGCGTCTTTATCGATGGCAAATTCATTGG
CGGTGGCACTGACATCAAACGAATGTTCGAGACAGGAGCTCTGCAAAAAT
ATTTCCAATAAAAGCTTTCTAGACCAT

BS14866.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6852-RC 345 CG6852-PC 1..345 17..361 1725 100 Plus
CG6852-RA 345 CG6852-PA 1..345 17..361 1725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:44:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6852-RC 607 CG6852-RC 178..523 17..362 1730 100 Plus
CG6852-RA 595 CG6852-RA 166..511 17..362 1730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:44:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18869503..18869646 17..160 720 100 Plus
3L 28110227 3L 18869705..18869813 159..267 545 100 Plus
3L 28110227 3L 18869876..18869973 265..362 490 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:44:12 has no hits.

BS14866.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:48 Download gff for BS14866.complete
Subject Subject Range Query Range Percent Splice Strand
CG6852-RA 1..345 17..361 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:35 Download gff for BS14866.complete
Subject Subject Range Query Range Percent Splice Strand
CG6852-RA 40..405 12..374 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:11 Download gff for BS14866.complete
Subject Subject Range Query Range Percent Splice Strand
CG6852-RA 166..508 17..359 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:48 Download gff for BS14866.complete
Subject Subject Range Query Range Percent Splice Strand
CG6852-RA 40..405 12..374 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:41 Download gff for BS14866.complete
Subject Subject Range Query Range Percent Splice Strand
CG6852-RA 166..508 17..359 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:41 Download gff for BS14866.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18869503..18869646 17..160 100 -> Plus
3L 18869707..18869811 161..265 100 -> Plus
3L 18869877..18869970 266..359 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:11 Download gff for BS14866.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18862603..18862746 17..160 100 -> Plus
arm_3L 18862807..18862911 161..265 100 -> Plus
arm_3L 18862977..18863070 266..359 100   Plus

BS14866.pep Sequence

Translation from 16 to 360

> BS14866.pep
MGAVGSALRSPIVDMSTKQAKFVENTIASNKVVIFSKTYCPYCTMAKEPF
KKLNVDATIIELDGNPDGNEIQAVLGEITGARTVPRVFIDGKFIGGGTDI
KRMFETGALQKYFQ*

BS14866.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG6852-PC 114 CG6852-PC 1..114 1..114 585 100 Plus
CG6852-PA 114 CG6852-PA 1..114 1..114 585 100 Plus
Grx-1-PA 116 CG7975-PA 1..116 1..114 415 68.1 Plus