Clone BS14868 Report

Search the DGRC for BS14868

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:148
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG1835-RA
Protein status:BS14868.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14868.3prime Sequence

489 bp (489 high quality bases) assembled on 2006-10-13

> BS14868.3prime
ATGGTCTAGAAAGCTTCTATTTATTTTCCCGCTCGGTTATGGCCCAAGCA
CTGGGCACCGGTGTTCTTAGGGGTCTTGCATCAGAGTCACCGATTTTTCC
TCGCATCATGGGCTTCCTCAAAGGCAAGCTCCTTAGCCGGGCATTTTTAT
ATAGCTTTCGGGCACTTTTGGCCAATTCGTTCATAGACTTTTCGTATCGA
ATGAATGCGGTTTTCACCTCGTTCCTCGCGGAATCTGTCGAATTTCGACG
GAGCAGACTAACGGCTGTTGGAAGGCGGTCGCCCGCTTGGGGGCCACGCC
CCCATTCGACTGTTGTCTCTACTGCCTTCTTTTCGGAGACATCAGACTTC
CGATTCCTTTGGGCGGACAAGGACTGCATGGCCAGTAAATGTCGCCTAGT
GCCATAGAAACACAATTGCTGCACACAGGGCGTTATATAGATCAAACACT
TGCTTAATTTATTTCGGGGCTGCATGTCGACTGATAACT

BS14868.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1835-PA 459 CG1835-RA 1..459 475..17 2295 100 Minus
CG1835-PB 459 CG1835-RB 1..459 475..17 2270 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG1835-RA 663 CG1835-RA 104..562 475..17 2295 100 Minus
CG1835-RC 571 CG1835-RC 73..470 414..17 1990 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20669107..20669432 414..89 1630 100 Minus
X 23542271 X 20669494..20669568 91..17 375 100 Minus
X 23542271 X 20670669..20670743 91..17 360 98.7 Minus
X 23542271 X 20669889..20669962 91..17 325 98.7 Minus
X 23542271 X 20670283..20670356 91..17 325 98.7 Minus
X 23542271 X 20668431..20668491 475..415 305 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:44:45 has no hits.

BS14868.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:18 Download gff for BS14868.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1835-PA 1..459 17..475 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:25:03 Download gff for BS14868.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1835-RA 96..562 17..482 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:27:18 Download gff for BS14868.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1835-RA 96..562 17..482 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:27:18 Download gff for BS14868.3prime
Subject Subject Range Query Range Percent Splice Strand
X 20669495..20669568 17..90 100   Minus
X 20668423..20668491 415..482 95 -> Minus
X 20669107..20669430 91..414 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:25:03 Download gff for BS14868.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20539450..20539518 415..482 95 -> Minus
arm_X 20540134..20540457 91..414 100 -> Minus
arm_X 20540522..20540595 17..90 100   Minus

BS14868.5prime Sequence

489 bp (489 high quality bases) assembled on 2006-10-13

> BS14868.5prime
GAAGTTATCAGTCGACATGCAGCCCCGAAATAAATTAAGCAAGTGTTTGA
TCTATATAACGCCCTGTGTGCAGCAATTGTGTTTCTATGGCACTAGGCGA
CATTTACTGGCCATGCAGTCCTTGTCCGCCCAAAGGAATCGGAAGTCTGA
TGTCTCCGAAAAGAAGGCAGTAGAGACAACAGTCGAATGGGGGCGTGGCC
CCCAAGCGGGCGACCGCCTTCCAACAGCCGTTAGTCTGCTCCGTCGAAAT
TCGACAGATTCCGCGAGGAACGAGGTGAAAACCGCATTCATTCGATACGA
AAAGTCTATGAACGAATTGGCCAAAAGTGCCCGAAAGCTATATAAAAATG
CCCGGCTAAGGAGCTTGCCTTTGAGGAAGCCCATGATGCGAGGAAAAATC
GGTGACTCTGATGCAAGACCCCTAAGAACACCGGTGCCCAGTGCTTGGGC
CATAACCGAGCGGGAAAATAAATAGAAGCTTTCTAGACC

BS14868.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG1835-PA 459 CG1835-RA 1..459 17..475 2295 100 Plus
CG1835-PB 459 CG1835-RB 1..459 17..475 2270 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG1835-RA 663 CG1835-RA 104..562 17..475 2295 100 Plus
CG1835-RC 571 CG1835-RC 73..470 78..475 1990 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20669107..20669432 78..403 1630 100 Plus
X 23542271 X 20669494..20669568 401..475 375 100 Plus
X 23542271 X 20670669..20670743 401..475 360 98.7 Plus
X 23542271 X 20669889..20669962 401..475 325 98.7 Plus
X 23542271 X 20670283..20670356 401..475 325 98.7 Plus
X 23542271 X 20668431..20668491 17..77 305 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:45:05 has no hits.

BS14868.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:19 Download gff for BS14868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1835-PA 1..459 17..475 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:25:08 Download gff for BS14868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1835-RA 96..562 10..475 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:28:11 Download gff for BS14868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1835-RA 96..562 10..475 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:28:11 Download gff for BS14868.5prime
Subject Subject Range Query Range Percent Splice Strand
X 20668423..20668491 10..77 95 -> Plus
X 20669107..20669430 78..401 100 -> Plus
X 20669495..20669568 402..475 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:25:08 Download gff for BS14868.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20539450..20539518 10..77 95 -> Plus
arm_X 20540134..20540457 78..401 100 -> Plus
arm_X 20540522..20540595 402..475 100   Plus

BS14868.complete Sequence

491 bp assembled on 2006-11-01

GenBank Submission: FJ637812

> BS14868.complete
GAAGTTATCAGTCGACATGCAGCCCCGAAATAAATTAAGCAAGTGTTTGA
TCTATATAACGCCCTGTGTGCAGCAATTGTGTTTCTATGGCACTAGGCGA
CATTTACTGGCCATGCAGTCCTTGTCCGCCCAAAGGAATCGGAAGTCTGA
TGTCTCCGAAAAGAAGGCAGTAGAGACAACAGTCGAATGGGGGCGTGGCC
CCCAAGCGGGCGACCGCCTTCCAACAGCCGTTAGTCTGCTCCGTCGAAAT
TCGACAGATTCCGCGAGGAACGAGGTGAAAACCGCATTCATTCGATACGA
AAAGTCTATGAACGAATTGGCCAAAAGTGCCCGAAAGCTATATAAAAATG
CCCGGCTAAGGAGCTTGCCTTTGAGGAAGCCCATGATGCGAGGAAAAATC
GGTGACTCTGATGCAAGACCCCTAAGAACACCGGTGCCCAGTGCTTGGGC
CATAACCGAGCGGGAAAATAAATAGAAGCTTTCTAGACCAT

BS14868.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:12:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG1835-RA 459 CG1835-PA 1..459 17..475 2295 100 Plus
CG1835-RC 363 CG1835-PC 1..363 113..475 1815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG1835-RA 663 CG1835-RA 104..562 17..475 2295 100 Plus
CG1835-RC 571 CG1835-RC 73..470 78..475 1990 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20669107..20669432 78..403 1630 100 Plus
X 23542271 X 20669494..20669568 401..475 375 100 Plus
X 23542271 X 20670669..20670743 401..475 360 98.7 Plus
X 23542271 X 20669889..20669962 401..475 325 98.7 Plus
X 23542271 X 20670283..20670356 401..475 325 98.7 Plus
X 23542271 X 20668431..20668491 17..77 305 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:12:43 has no hits.

BS14868.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:43 Download gff for BS14868.complete
Subject Subject Range Query Range Percent Splice Strand
CG1835-RA 1..459 17..475 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:30 Download gff for BS14868.complete
Subject Subject Range Query Range Percent Splice Strand
CG1835-RA 102..568 10..475 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:40 Download gff for BS14868.complete
Subject Subject Range Query Range Percent Splice Strand
CG1835-RA 104..551 17..464 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:44 Download gff for BS14868.complete
Subject Subject Range Query Range Percent Splice Strand
CG1835-RA 102..568 10..475 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:59 Download gff for BS14868.complete
Subject Subject Range Query Range Percent Splice Strand
CG1835-RA 104..551 17..464 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:59 Download gff for BS14868.complete
Subject Subject Range Query Range Percent Splice Strand
X 20668431..20668491 17..77 100 -> Plus
X 20669107..20669430 78..401 100 -> Plus
X 20669495..20669557 402..464 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:40 Download gff for BS14868.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20539458..20539518 17..77 100 -> Plus
arm_X 20540134..20540457 78..401 100 -> Plus
arm_X 20540522..20540584 402..464 100   Plus

BS14868.pep Sequence

Translation from 16 to 474

> BS14868.pep
MQPRNKLSKCLIYITPCVQQLCFYGTRRHLLAMQSLSAQRNRKSDVSEKK
AVETTVEWGRGPQAGDRLPTAVSLLRRNSTDSARNEVKTAFIRYEKSMNE
LAKSARKLYKNARLRSLPLRKPMMRGKIGDSDARPLRTPVPSAWAITERE
NK*

BS14868.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG1835-PA 152 CG1835-PA 1..152 1..152 780 100 Plus
CG1835-PC 120 CG1835-PC 1..120 33..152 604 100 Plus