Clone Sequence Records
BS14868.3prime Sequence
489 bp (489 high quality bases) assembled on 2006-10-13
> BS14868.3prime
ATGGTCTAGAAAGCTTCTATTTATTTTCCCGCTCGGTTATGGCCCAAGCA
CTGGGCACCGGTGTTCTTAGGGGTCTTGCATCAGAGTCACCGATTTTTCC
TCGCATCATGGGCTTCCTCAAAGGCAAGCTCCTTAGCCGGGCATTTTTAT
ATAGCTTTCGGGCACTTTTGGCCAATTCGTTCATAGACTTTTCGTATCGA
ATGAATGCGGTTTTCACCTCGTTCCTCGCGGAATCTGTCGAATTTCGACG
GAGCAGACTAACGGCTGTTGGAAGGCGGTCGCCCGCTTGGGGGCCACGCC
CCCATTCGACTGTTGTCTCTACTGCCTTCTTTTCGGAGACATCAGACTTC
CGATTCCTTTGGGCGGACAAGGACTGCATGGCCAGTAAATGTCGCCTAGT
GCCATAGAAACACAATTGCTGCACACAGGGCGTTATATAGATCAAACACT
TGCTTAATTTATTTCGGGGCTGCATGTCGACTGATAACT
BS14868.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:53:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1835-PA | 459 | CG1835-RA | 1..459 | 475..17 | 2295 | 100 | Minus |
CG1835-PB | 459 | CG1835-RB | 1..459 | 475..17 | 2270 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:44:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1835-RA | 663 | CG1835-RA | 104..562 | 475..17 | 2295 | 100 | Minus |
CG1835-RC | 571 | CG1835-RC | 73..470 | 414..17 | 1990 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:44:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20669107..20669432 | 414..89 | 1630 | 100 | Minus |
X | 23542271 | X | 20669494..20669568 | 91..17 | 375 | 100 | Minus |
X | 23542271 | X | 20670669..20670743 | 91..17 | 360 | 98.7 | Minus |
X | 23542271 | X | 20669889..20669962 | 91..17 | 325 | 98.7 | Minus |
X | 23542271 | X | 20670283..20670356 | 91..17 | 325 | 98.7 | Minus |
X | 23542271 | X | 20668431..20668491 | 475..415 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:44:45 has no hits.
BS14868.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:18 Download gff for
BS14868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1835-PA | 1..459 | 17..475 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:25:03 Download gff for
BS14868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1835-RA | 96..562 | 17..482 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:27:18 Download gff for
BS14868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1835-RA | 96..562 | 17..482 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:27:18 Download gff for
BS14868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20669495..20669568 | 17..90 | 100 | | Minus |
X | 20668423..20668491 | 415..482 | 95 | -> | Minus |
X | 20669107..20669430 | 91..414 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:25:03 Download gff for
BS14868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20539450..20539518 | 415..482 | 95 | -> | Minus |
arm_X | 20540134..20540457 | 91..414 | 100 | -> | Minus |
arm_X | 20540522..20540595 | 17..90 | 100 | | Minus |
BS14868.5prime Sequence
489 bp (489 high quality bases) assembled on 2006-10-13
> BS14868.5prime
GAAGTTATCAGTCGACATGCAGCCCCGAAATAAATTAAGCAAGTGTTTGA
TCTATATAACGCCCTGTGTGCAGCAATTGTGTTTCTATGGCACTAGGCGA
CATTTACTGGCCATGCAGTCCTTGTCCGCCCAAAGGAATCGGAAGTCTGA
TGTCTCCGAAAAGAAGGCAGTAGAGACAACAGTCGAATGGGGGCGTGGCC
CCCAAGCGGGCGACCGCCTTCCAACAGCCGTTAGTCTGCTCCGTCGAAAT
TCGACAGATTCCGCGAGGAACGAGGTGAAAACCGCATTCATTCGATACGA
AAAGTCTATGAACGAATTGGCCAAAAGTGCCCGAAAGCTATATAAAAATG
CCCGGCTAAGGAGCTTGCCTTTGAGGAAGCCCATGATGCGAGGAAAAATC
GGTGACTCTGATGCAAGACCCCTAAGAACACCGGTGCCCAGTGCTTGGGC
CATAACCGAGCGGGAAAATAAATAGAAGCTTTCTAGACC
BS14868.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1835-PA | 459 | CG1835-RA | 1..459 | 17..475 | 2295 | 100 | Plus |
CG1835-PB | 459 | CG1835-RB | 1..459 | 17..475 | 2270 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:45:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1835-RA | 663 | CG1835-RA | 104..562 | 17..475 | 2295 | 100 | Plus |
CG1835-RC | 571 | CG1835-RC | 73..470 | 78..475 | 1990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:45:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20669107..20669432 | 78..403 | 1630 | 100 | Plus |
X | 23542271 | X | 20669494..20669568 | 401..475 | 375 | 100 | Plus |
X | 23542271 | X | 20670669..20670743 | 401..475 | 360 | 98.7 | Plus |
X | 23542271 | X | 20669889..20669962 | 401..475 | 325 | 98.7 | Plus |
X | 23542271 | X | 20670283..20670356 | 401..475 | 325 | 98.7 | Plus |
X | 23542271 | X | 20668431..20668491 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:45:05 has no hits.
BS14868.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:19 Download gff for
BS14868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1835-PA | 1..459 | 17..475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:25:08 Download gff for
BS14868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1835-RA | 96..562 | 10..475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:28:11 Download gff for
BS14868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1835-RA | 96..562 | 10..475 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:28:11 Download gff for
BS14868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20668423..20668491 | 10..77 | 95 | -> | Plus |
X | 20669107..20669430 | 78..401 | 100 | -> | Plus |
X | 20669495..20669568 | 402..475 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:25:08 Download gff for
BS14868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20539450..20539518 | 10..77 | 95 | -> | Plus |
arm_X | 20540134..20540457 | 78..401 | 100 | -> | Plus |
arm_X | 20540522..20540595 | 402..475 | 100 | | Plus |
BS14868.complete Sequence
491 bp assembled on 2006-11-01
GenBank Submission: FJ637812
> BS14868.complete
GAAGTTATCAGTCGACATGCAGCCCCGAAATAAATTAAGCAAGTGTTTGA
TCTATATAACGCCCTGTGTGCAGCAATTGTGTTTCTATGGCACTAGGCGA
CATTTACTGGCCATGCAGTCCTTGTCCGCCCAAAGGAATCGGAAGTCTGA
TGTCTCCGAAAAGAAGGCAGTAGAGACAACAGTCGAATGGGGGCGTGGCC
CCCAAGCGGGCGACCGCCTTCCAACAGCCGTTAGTCTGCTCCGTCGAAAT
TCGACAGATTCCGCGAGGAACGAGGTGAAAACCGCATTCATTCGATACGA
AAAGTCTATGAACGAATTGGCCAAAAGTGCCCGAAAGCTATATAAAAATG
CCCGGCTAAGGAGCTTGCCTTTGAGGAAGCCCATGATGCGAGGAAAAATC
GGTGACTCTGATGCAAGACCCCTAAGAACACCGGTGCCCAGTGCTTGGGC
CATAACCGAGCGGGAAAATAAATAGAAGCTTTCTAGACCAT
BS14868.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:12:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1835-RA | 459 | CG1835-PA | 1..459 | 17..475 | 2295 | 100 | Plus |
CG1835-RC | 363 | CG1835-PC | 1..363 | 113..475 | 1815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1835-RA | 663 | CG1835-RA | 104..562 | 17..475 | 2295 | 100 | Plus |
CG1835-RC | 571 | CG1835-RC | 73..470 | 78..475 | 1990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20669107..20669432 | 78..403 | 1630 | 100 | Plus |
X | 23542271 | X | 20669494..20669568 | 401..475 | 375 | 100 | Plus |
X | 23542271 | X | 20670669..20670743 | 401..475 | 360 | 98.7 | Plus |
X | 23542271 | X | 20669889..20669962 | 401..475 | 325 | 98.7 | Plus |
X | 23542271 | X | 20670283..20670356 | 401..475 | 325 | 98.7 | Plus |
X | 23542271 | X | 20668431..20668491 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:12:43 has no hits.
BS14868.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:43 Download gff for
BS14868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1835-RA | 1..459 | 17..475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:30 Download gff for
BS14868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1835-RA | 102..568 | 10..475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:40 Download gff for
BS14868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1835-RA | 104..551 | 17..464 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:44 Download gff for
BS14868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1835-RA | 102..568 | 10..475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:59 Download gff for
BS14868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1835-RA | 104..551 | 17..464 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:59 Download gff for
BS14868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20668431..20668491 | 17..77 | 100 | -> | Plus |
X | 20669107..20669430 | 78..401 | 100 | -> | Plus |
X | 20669495..20669557 | 402..464 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:40 Download gff for
BS14868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20539458..20539518 | 17..77 | 100 | -> | Plus |
arm_X | 20540134..20540457 | 78..401 | 100 | -> | Plus |
arm_X | 20540522..20540584 | 402..464 | 100 | | Plus |
BS14868.pep Sequence
Translation from 16 to 474
> BS14868.pep
MQPRNKLSKCLIYITPCVQQLCFYGTRRHLLAMQSLSAQRNRKSDVSEKK
AVETTVEWGRGPQAGDRLPTAVSLLRRNSTDSARNEVKTAFIRYEKSMNE
LAKSARKLYKNARLRSLPLRKPMMRGKIGDSDARPLRTPVPSAWAITERE
NK*
BS14868.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:40:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1835-PA | 152 | CG1835-PA | 1..152 | 1..152 | 780 | 100 | Plus |
CG1835-PC | 120 | CG1835-PC | 1..120 | 33..152 | 604 | 100 | Plus |