Clone BS14869 Report

Search the DGRC for BS14869

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:148
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptObp49a-RA
Protein status:BS14869.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14869.3prime Sequence

669 bp (669 high quality bases) assembled on 2006-10-13

> BS14869.3prime
ATGGTCTAGAAAGCTTTTACATATCTTCGGCGGAAGGAGGAGGACCACGA
GGTGGCTTGCACTTGGTGAAGAACTCTTTCATGTCAGTGCACTGCTGGGA
ATCATTCCGTATTGAGTCTGGGCAATTCTTCATCATATTGCGGAACACAC
AGCCCATGAGGTGACCAGCATCGTGAGGACACATGGGGAATCCGGGTGGC
GGAGATGGAGCCGGACGAGGAGGTAAATTGGCCTCGAAATCCGCGACTTT
GGTTGCACAGGTGGTGAAGGCCTGGGTGGCCGTGGTCTGCAGATCAGAAC
TGTCCTCGAAGACCTCCTGCAAGTAGGCGTTCAGCTTTGCCTCATCCAGT
TTCCGGTTTTGATAGATTCCAGTCTCGTTAAAGATGCAGGAGAAGAAGCA
TGGTGGGGGATGCGGATGATGATGACGACGCTTGCTCTCAAAGGATCCAC
TTGCTTCCCCATCCGGCGGCGGCGGCGGAGTCATGTCAAACTTGATGCAC
TTTTGCTTCAACTCGGCGGTCACGAAGTCCGGCATTGGACAACAGGTTTT
GGGATTGACAAACGATGGCCGCTTGCTGCAGTCCACGTCAGCCGAGACGG
CTGCATTCAGGCAGAACCCGACAACGAGCAGTAATAGCTGCGATTTTGAA
AGCATGTCGACTGATAACT

BS14869.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG30052-PA 639 Obp49a-RA 1..639 655..17 3195 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:17:52
Subject Length Description Subject Range Query Range Score Percent Strand
Obp49a-RA 780 CG30052-RA 36..674 655..17 3195 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:17:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12690165..12690548 17..400 1920 100 Plus
2R 25286936 2R 12690610..12690817 401..608 1040 100 Plus
2R 25286936 2R 12690873..12690920 608..655 240 100 Plus
Blast to na_te.dros performed on 2015-02-08 12:17:48 has no hits.

BS14869.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:19 Download gff for BS14869.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30052-PA 1..639 17..655 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:35 Download gff for BS14869.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp49a-RA 36..677 13..655 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:13 Download gff for BS14869.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp49a-RA 36..677 13..655 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:13 Download gff for BS14869.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12690873..12690920 608..655 100   Plus
2R 12690162..12690548 13..400 99 <- Plus
2R 12690610..12690816 401..607 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:35 Download gff for BS14869.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8577667..8578053 13..400 99 <- Plus
arm_2R 8578115..8578321 401..607 100 <- Plus
arm_2R 8578378..8578425 608..655 100   Plus

BS14869.5prime Sequence

669 bp (669 high quality bases) assembled on 2006-10-13

> BS14869.5prime
GAAGTTATCAGTCGACATGCTTTCAAAATCGCAGCTATTACTGCTCGTTG
TCGGGTTCTGCCTGAATGCAGCCGTCTCGGCTGACGTGGACTGCAGCAAG
CGGCCATCGTTTGTCAATCCCAAAACCTGTTGTCCAATGCCGGACTTCGT
GACCGCCGAGTTGAAGCAAAAGTGCATCAAGTTTGACATGACTCCGCCGC
CGCCGCCGGATGGGGAAGCAAGTGGATCCTTTGAGAGCAAGCGTCGTCAT
CATCATCCGCATCCCCCACCATGCTTCTTCTCCTGCATCTTTAACGAGAC
TGGAATCTATCAAAACCGGAAACTGGATGAGGCAAAGCTGAACGCCTACT
TGCAGGAGGTCTTCGAGGACAGTTCTGATCTGCAGACCACGGCCACCCAG
GCCTTCACCACCTGTGCAACCAAAGTCGCGGATTTCGAGGCCAATTTACC
TCCTCGTCCGGCTCCATCTCCGCCACCCGGATTCCCCATGTGTCCTCACG
ATGCTGGTCACCTCATGGGCTGTGTGTTCCGCAATATGATGAAGAATTGC
CCAGACTCAATACGGAATGATTCCCAGCAGTGCACTGACATGAAAGAGTT
CTTCACCAAGTGCAAGCCACCTCGTGGTCCTCCTCCTTCCGCCGAAGATA
TGTAAAAGCTTTCTAGACC

BS14869.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG30052-PA 639 Obp49a-RA 1..639 17..655 3195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:24
Subject Length Description Subject Range Query Range Score Percent Strand
Obp49a-RA 780 CG30052-RA 36..674 17..655 3195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12690165..12690548 655..272 1920 100 Minus
2R 25286936 2R 12690610..12690817 271..64 1040 100 Minus
2R 25286936 2R 12690873..12690920 64..17 240 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:08:21 has no hits.

BS14869.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:19 Download gff for BS14869.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30052-PA 1..639 17..655 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:45:00 Download gff for BS14869.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp49a-RA 36..677 17..659 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:20:37 Download gff for BS14869.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp49a-RA 36..677 17..659 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:20:37 Download gff for BS14869.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12690162..12690548 272..659 99 <- Minus
2R 12690610..12690816 65..271 100 <- Minus
2R 12690873..12690920 17..64 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:45:00 Download gff for BS14869.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8577667..8578053 272..659 99 <- Minus
arm_2R 8578115..8578321 65..271 100 <- Minus
arm_2R 8578378..8578425 17..64 100   Minus

BS14869.complete Sequence

671 bp assembled on 2006-11-01

GenBank Submission: FJ637813

> BS14869.complete
GAAGTTATCAGTCGACATGCTTTCAAAATCGCAGCTATTACTGCTCGTTG
TCGGGTTCTGCCTGAATGCAGCCGTCTCGGCTGACGTGGACTGCAGCAAG
CGGCCATCGTTTGTCAATCCCAAAACCTGTTGTCCAATGCCGGACTTCGT
GACCGCCGAGTTGAAGCAAAAGTGCATCAAGTTTGACATGACTCCGCCGC
CGCCGCCGGATGGGGAAGCAAGTGGATCCTTTGAGAGCAAGCGTCGTCAT
CATCATCCGCATCCCCCACCATGCTTCTTCTCCTGCATCTTTAACGAGAC
TGGAATCTATCAAAACCGGAAACTGGATGAGGCAAAGCTGAACGCCTACT
TGCAGGAGGTCTTCGAGGACAGTTCTGATCTGCAGACCACGGCCACCCAG
GCCTTCACCACCTGTGCAACCAAAGTCGCGGATTTCGAGGCCAATTTACC
TCCTCGTCCGGCTCCATCTCCGCCACCCGGATTCCCCATGTGTCCTCACG
ATGCTGGTCACCTCATGGGCTGTGTGTTCCGCAATATGATGAAGAATTGC
CCAGACTCAATACGGAATGATTCCCAGCAGTGCACTGACATGAAAGAGTT
CTTCACCAAGTGCAAGCCACCTCGTGGTCCTCCTCCTTCCGCCGAAGATA
TGTAAAAGCTTTCTAGACCAT

BS14869.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:13:05
Subject Length Description Subject Range Query Range Score Percent Strand
Obp49a-RA 639 CG30052-PA 1..639 17..655 3195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
Obp49a-RA 780 CG30052-RA 36..674 17..655 3195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:13:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12690165..12690548 655..272 1920 100 Minus
2R 25286936 2R 12690610..12690817 271..64 1040 100 Minus
2R 25286936 2R 12690873..12690920 64..17 240 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:13:04 has no hits.

BS14869.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:16 Download gff for BS14869.complete
Subject Subject Range Query Range Percent Splice Strand
Obp49a-RA 1..639 17..655 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:20 Download gff for BS14869.complete
Subject Subject Range Query Range Percent Splice Strand
Obp49a-RA 12..653 17..659 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:47:46 Download gff for BS14869.complete
Subject Subject Range Query Range Percent Splice Strand
Obp49a-RA 36..672 17..653 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:17 Download gff for BS14869.complete
Subject Subject Range Query Range Percent Splice Strand
Obp49a-RA 12..653 17..659 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:28 Download gff for BS14869.complete
Subject Subject Range Query Range Percent Splice Strand
Obp49a-RA 36..672 17..653 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:28 Download gff for BS14869.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12690167..12690548 272..653 100 <- Minus
2R 12690610..12690816 65..271 100 <- Minus
2R 12690873..12690920 17..64 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:47:46 Download gff for BS14869.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8577672..8578053 272..653 100 <- Minus
arm_2R 8578115..8578321 65..271 100 <- Minus
arm_2R 8578378..8578425 17..64 100   Minus

BS14869.pep Sequence

Translation from 16 to 654

> BS14869.pep
MLSKSQLLLLVVGFCLNAAVSADVDCSKRPSFVNPKTCCPMPDFVTAELK
QKCIKFDMTPPPPPDGEASGSFESKRRHHHPHPPPCFFSCIFNETGIYQN
RKLDEAKLNAYLQEVFEDSSDLQTTATQAFTTCATKVADFEANLPPRPAP
SPPPGFPMCPHDAGHLMGCVFRNMMKNCPDSIRNDSQQCTDMKEFFTKCK
PPRGPPPSAEDM*

BS14869.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:19
Subject Length Description Subject Range Query Range Score Percent Strand
Obp49a-PA 212 CG30052-PA 1..212 1..212 1180 100 Plus
Obp50e-PA 196 CG13939-PA 20..196 22..209 174 27.6 Plus
Obp47b-PA 199 CG13208-PA 1..195 2..199 143 24.3 Plus