Clone Sequence Records
BS14869.3prime Sequence
669 bp (669 high quality bases) assembled on 2006-10-13
> BS14869.3prime
ATGGTCTAGAAAGCTTTTACATATCTTCGGCGGAAGGAGGAGGACCACGA
GGTGGCTTGCACTTGGTGAAGAACTCTTTCATGTCAGTGCACTGCTGGGA
ATCATTCCGTATTGAGTCTGGGCAATTCTTCATCATATTGCGGAACACAC
AGCCCATGAGGTGACCAGCATCGTGAGGACACATGGGGAATCCGGGTGGC
GGAGATGGAGCCGGACGAGGAGGTAAATTGGCCTCGAAATCCGCGACTTT
GGTTGCACAGGTGGTGAAGGCCTGGGTGGCCGTGGTCTGCAGATCAGAAC
TGTCCTCGAAGACCTCCTGCAAGTAGGCGTTCAGCTTTGCCTCATCCAGT
TTCCGGTTTTGATAGATTCCAGTCTCGTTAAAGATGCAGGAGAAGAAGCA
TGGTGGGGGATGCGGATGATGATGACGACGCTTGCTCTCAAAGGATCCAC
TTGCTTCCCCATCCGGCGGCGGCGGCGGAGTCATGTCAAACTTGATGCAC
TTTTGCTTCAACTCGGCGGTCACGAAGTCCGGCATTGGACAACAGGTTTT
GGGATTGACAAACGATGGCCGCTTGCTGCAGTCCACGTCAGCCGAGACGG
CTGCATTCAGGCAGAACCCGACAACGAGCAGTAATAGCTGCGATTTTGAA
AGCATGTCGACTGATAACT
BS14869.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30052-PA | 639 | Obp49a-RA | 1..639 | 655..17 | 3195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:17:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp49a-RA | 780 | CG30052-RA | 36..674 | 655..17 | 3195 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:17:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12690165..12690548 | 17..400 | 1920 | 100 | Plus |
2R | 25286936 | 2R | 12690610..12690817 | 401..608 | 1040 | 100 | Plus |
2R | 25286936 | 2R | 12690873..12690920 | 608..655 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:17:48 has no hits.
BS14869.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:19 Download gff for
BS14869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30052-PA | 1..639 | 17..655 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:35 Download gff for
BS14869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp49a-RA | 36..677 | 13..655 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:13 Download gff for
BS14869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp49a-RA | 36..677 | 13..655 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:13 Download gff for
BS14869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12690873..12690920 | 608..655 | 100 | | Plus |
2R | 12690162..12690548 | 13..400 | 99 | <- | Plus |
2R | 12690610..12690816 | 401..607 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:35 Download gff for
BS14869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8577667..8578053 | 13..400 | 99 | <- | Plus |
arm_2R | 8578115..8578321 | 401..607 | 100 | <- | Plus |
arm_2R | 8578378..8578425 | 608..655 | 100 | | Plus |
BS14869.5prime Sequence
669 bp (669 high quality bases) assembled on 2006-10-13
> BS14869.5prime
GAAGTTATCAGTCGACATGCTTTCAAAATCGCAGCTATTACTGCTCGTTG
TCGGGTTCTGCCTGAATGCAGCCGTCTCGGCTGACGTGGACTGCAGCAAG
CGGCCATCGTTTGTCAATCCCAAAACCTGTTGTCCAATGCCGGACTTCGT
GACCGCCGAGTTGAAGCAAAAGTGCATCAAGTTTGACATGACTCCGCCGC
CGCCGCCGGATGGGGAAGCAAGTGGATCCTTTGAGAGCAAGCGTCGTCAT
CATCATCCGCATCCCCCACCATGCTTCTTCTCCTGCATCTTTAACGAGAC
TGGAATCTATCAAAACCGGAAACTGGATGAGGCAAAGCTGAACGCCTACT
TGCAGGAGGTCTTCGAGGACAGTTCTGATCTGCAGACCACGGCCACCCAG
GCCTTCACCACCTGTGCAACCAAAGTCGCGGATTTCGAGGCCAATTTACC
TCCTCGTCCGGCTCCATCTCCGCCACCCGGATTCCCCATGTGTCCTCACG
ATGCTGGTCACCTCATGGGCTGTGTGTTCCGCAATATGATGAAGAATTGC
CCAGACTCAATACGGAATGATTCCCAGCAGTGCACTGACATGAAAGAGTT
CTTCACCAAGTGCAAGCCACCTCGTGGTCCTCCTCCTTCCGCCGAAGATA
TGTAAAAGCTTTCTAGACC
BS14869.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30052-PA | 639 | Obp49a-RA | 1..639 | 17..655 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp49a-RA | 780 | CG30052-RA | 36..674 | 17..655 | 3195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12690165..12690548 | 655..272 | 1920 | 100 | Minus |
2R | 25286936 | 2R | 12690610..12690817 | 271..64 | 1040 | 100 | Minus |
2R | 25286936 | 2R | 12690873..12690920 | 64..17 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:08:21 has no hits.
BS14869.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:19 Download gff for
BS14869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30052-PA | 1..639 | 17..655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:45:00 Download gff for
BS14869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp49a-RA | 36..677 | 17..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:20:37 Download gff for
BS14869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp49a-RA | 36..677 | 17..659 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:20:37 Download gff for
BS14869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12690162..12690548 | 272..659 | 99 | <- | Minus |
2R | 12690610..12690816 | 65..271 | 100 | <- | Minus |
2R | 12690873..12690920 | 17..64 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:45:00 Download gff for
BS14869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8577667..8578053 | 272..659 | 99 | <- | Minus |
arm_2R | 8578115..8578321 | 65..271 | 100 | <- | Minus |
arm_2R | 8578378..8578425 | 17..64 | 100 | | Minus |
BS14869.complete Sequence
671 bp assembled on 2006-11-01
GenBank Submission: FJ637813
> BS14869.complete
GAAGTTATCAGTCGACATGCTTTCAAAATCGCAGCTATTACTGCTCGTTG
TCGGGTTCTGCCTGAATGCAGCCGTCTCGGCTGACGTGGACTGCAGCAAG
CGGCCATCGTTTGTCAATCCCAAAACCTGTTGTCCAATGCCGGACTTCGT
GACCGCCGAGTTGAAGCAAAAGTGCATCAAGTTTGACATGACTCCGCCGC
CGCCGCCGGATGGGGAAGCAAGTGGATCCTTTGAGAGCAAGCGTCGTCAT
CATCATCCGCATCCCCCACCATGCTTCTTCTCCTGCATCTTTAACGAGAC
TGGAATCTATCAAAACCGGAAACTGGATGAGGCAAAGCTGAACGCCTACT
TGCAGGAGGTCTTCGAGGACAGTTCTGATCTGCAGACCACGGCCACCCAG
GCCTTCACCACCTGTGCAACCAAAGTCGCGGATTTCGAGGCCAATTTACC
TCCTCGTCCGGCTCCATCTCCGCCACCCGGATTCCCCATGTGTCCTCACG
ATGCTGGTCACCTCATGGGCTGTGTGTTCCGCAATATGATGAAGAATTGC
CCAGACTCAATACGGAATGATTCCCAGCAGTGCACTGACATGAAAGAGTT
CTTCACCAAGTGCAAGCCACCTCGTGGTCCTCCTCCTTCCGCCGAAGATA
TGTAAAAGCTTTCTAGACCAT
BS14869.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:13:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp49a-RA | 639 | CG30052-PA | 1..639 | 17..655 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:13:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp49a-RA | 780 | CG30052-RA | 36..674 | 17..655 | 3195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:13:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12690165..12690548 | 655..272 | 1920 | 100 | Minus |
2R | 25286936 | 2R | 12690610..12690817 | 271..64 | 1040 | 100 | Minus |
2R | 25286936 | 2R | 12690873..12690920 | 64..17 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:13:04 has no hits.
BS14869.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:16 Download gff for
BS14869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp49a-RA | 1..639 | 17..655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:20 Download gff for
BS14869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp49a-RA | 12..653 | 17..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:47:46 Download gff for
BS14869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp49a-RA | 36..672 | 17..653 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:17 Download gff for
BS14869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp49a-RA | 12..653 | 17..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:28 Download gff for
BS14869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp49a-RA | 36..672 | 17..653 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:28 Download gff for
BS14869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12690167..12690548 | 272..653 | 100 | <- | Minus |
2R | 12690610..12690816 | 65..271 | 100 | <- | Minus |
2R | 12690873..12690920 | 17..64 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:47:46 Download gff for
BS14869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8577672..8578053 | 272..653 | 100 | <- | Minus |
arm_2R | 8578115..8578321 | 65..271 | 100 | <- | Minus |
arm_2R | 8578378..8578425 | 17..64 | 100 | | Minus |
BS14869.pep Sequence
Translation from 16 to 654
> BS14869.pep
MLSKSQLLLLVVGFCLNAAVSADVDCSKRPSFVNPKTCCPMPDFVTAELK
QKCIKFDMTPPPPPDGEASGSFESKRRHHHPHPPPCFFSCIFNETGIYQN
RKLDEAKLNAYLQEVFEDSSDLQTTATQAFTTCATKVADFEANLPPRPAP
SPPPGFPMCPHDAGHLMGCVFRNMMKNCPDSIRNDSQQCTDMKEFFTKCK
PPRGPPPSAEDM*
BS14869.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp49a-PA | 212 | CG30052-PA | 1..212 | 1..212 | 1180 | 100 | Plus |
Obp50e-PA | 196 | CG13939-PA | 20..196 | 22..209 | 174 | 27.6 | Plus |
Obp47b-PA | 199 | CG13208-PA | 1..195 | 2..199 | 143 | 24.3 | Plus |