Clone Sequence Records
BS14870.3prime Sequence
853 bp (749 high quality bases) assembled on 2006-10-13
> BS14870.3prime
ATGGTCTAGAAAGCTTTTAGCACTGGAGGGCAATTCCCACGCCGAACCGA
TGGTTTCCGTCCTTAAAGTTGTTGCAATCCAGCACGGCGGATATGGAGGC
GGTGATGCCGTCGCGCAGTTTCTGTTCATAGCCCAGGCCCAGCTCCACCA
GGTTGTTGACCTTGGCGCGTACGAGGGCATCCTCCTCCAAGTGGTAGATC
ATGCCCAGATTGACGACCACATCTCCGCCCTGCTGTTCACCCTCGGCAGC
TTCGCCGCCGCCGGCTCCCTTGGTTACCTCGATACCGGCATCGATCTTCT
CGCTCGCCTTGTAGAACAGCGAGGCCAACCAGGTGTCGCCGTTCTTCAGC
TCGCCATGGAGGGTGGCAGTTTCATTTGTCCAACCAAGGGCCACCTTCCA
GCCCTTGAGTTCGGTGTTGCCAACGTCAAATTCGGTGCCCACGCCGCCGA
GGAACTCCTTGTGGCCCACAACCAGCGAACAGTTGAGTATCGGCTCCGAG
TTCAGTCCAATGTCGGCCAGGAAGTTAAAGTTGTCCTGGGCATAGCCCAT
CTTGAACTTGCCATCCGCCTCATTTGATCCCGGCTGAAACTTGGCCTCGA
CGGCCAACATCAGGCCCTGTGCCAACTTATCCCGGTGCATAATCTCACCG
AAGAGCCAGTTCTCCGTGTTCCATCGCTCGGTTAGGGTCAGGCCTTGGTC
CTCGATCTTGTACTTGCTCTGAAGCGAGCCGGTCACCTTGCTGTTGTCCT
GGCTGGCGAAGCCGGTGGTGAAGAACTCAATCCCCGAATTGGTCAGGGTC
TTGCAGTCGATCTGCCAGATGCCCGGATGGTAGCCGCGCTTGAAGAGATC
GCG
BS14870.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17137-PA | 882 | Porin2-RA | 46..882 | 853..17 | 4185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:18:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Porin2-RB | 1069 | CG17137-RB | 133..971 | 853..15 | 4195 | 100 | Minus |
| Porin2-RA | 1128 | CG17137-RA | 192..1030 | 853..15 | 4195 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:17:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10845886..10846218 | 15..347 | 1665 | 100 | Plus |
| 2L | 23513712 | 2L | 10846573..10846853 | 573..853 | 1405 | 100 | Plus |
| 2L | 23513712 | 2L | 10846281..10846506 | 347..572 | 1130 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:17:59 has no hits.
BS14870.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:20 Download gff for
BS14870.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17137-PA | 46..882 | 17..853 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:36 Download gff for
BS14870.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Porin2-RA | 192..1035 | 8..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:14 Download gff for
BS14870.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Porin2-RA | 192..1035 | 8..853 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:14 Download gff for
BS14870.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10846573..10846853 | 573..853 | 100 | | Plus |
| 2L | 10845881..10846218 | 8..347 | 98 | <- | Plus |
| 2L | 10846282..10846506 | 348..572 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:36 Download gff for
BS14870.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10846573..10846853 | 573..853 | 100 | | Plus |
| arm_2L | 10845881..10846218 | 8..347 | 98 | <- | Plus |
| arm_2L | 10846282..10846506 | 348..572 | 100 | <- | Plus |
BS14870.5prime Sequence
911 bp (762 high quality bases) assembled on 2006-10-13
> BS14870.5prime
GAAGTTATCAGTCGACATGGCCGCCAAAACACCGACATACCCAGATCTGG
GCAAGCTGGCCCGCGATCTCTTCAAGCGCGGCTACCATCCGGGCATCTGG
CAGATCGACTGCAAGACCCTGACCAATTCGGGGATTGAGTTCTTCACCAC
CGGCTTCGCCAGCCAGGACAACAGCAAGGTGACCGGCTCGCTTCAGAGCA
AGTACAAGATCGAGGACCAAGGCCTGACCCTAACCGAGCGATGGAACACG
GAGAACTGGCTCTTCGGTGAGATTATGCACCGGGATAAGTTGGCACAGGG
CCTGATGTTGGCCGTCGAGGCCAAGTTTCAGCCGGGATCAAATGAGGCGG
ATGGCAAGTTCAAGATGGGCTATGCCCAGGACAACTTTAACTTCCTGGCC
GACATTGGACTGAACTCGGAGCCGATACTCAACTGTTCGCTGGTTGTGGG
CCACAAGGAGTTCCTCGGCGGCGTGGGCACCGAATTTGACGTTGGCAACA
CCGAACTCAAGGGCTGGAAGGTGGCCCTTGGTTGGACAAATGAAACTGCC
ACCCTCCATGGCGAGCTGAAGAACGGCGACACCTGGTTGGCCTCGCTGTT
CTACAAGGCGAGCGAGAAGATCGATGCCGGTATCGAGGTAACCAAGGGAG
CCGGCGGCGGCGAAGCTGCCGAGGGTGAACAGCAGGGCGGAGATGTGGTC
GTCAATCTGGGCATGATCTACCACTTGGAGGAGGATGCCCTCGTACGCGC
CAAGGTCAACAACCTGGTGGAGCTGGGCCTGGGCTATGAACAGAAACTGC
GCGACGGCATCACCGCCTCCATATCCGCCGTGCTGGATTGCAACAACTTT
AAGGACGGAAACCATCGGTTCGGCGTGGGATTGCCCTCCAGTGCTAAAAG
CTTTCTAGACC
BS14870.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17137-PA | 882 | Porin2-RA | 1..864 | 17..880 | 4320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Porin2-RB | 1069 | CG17137-RB | 88..971 | 17..899 | 4395 | 99.9 | Plus |
| Porin2-RA | 1128 | CG17137-RA | 147..1030 | 17..899 | 4395 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10846573..10846898 | 342..17 | 1630 | 100 | Minus |
| 2L | 23513712 | 2L | 10845886..10846218 | 899..568 | 1615 | 99.7 | Minus |
| 2L | 23513712 | 2L | 10846281..10846506 | 568..343 | 1130 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:08:35 has no hits.
BS14870.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:20 Download gff for
BS14870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17137-PA | 1..882 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:45:01 Download gff for
BS14870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Porin2-RA | 147..1035 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:21:49 Download gff for
BS14870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Porin2-RA | 147..1035 | 17..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:21:49 Download gff for
BS14870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10845881..10846218 | 568..906 | 98 | <- | Minus |
| 2L | 10846282..10846506 | 343..567 | 100 | <- | Minus |
| 2L | 10846573..10846898 | 17..342 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:45:01 Download gff for
BS14870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10845881..10846218 | 568..906 | 98 | <- | Minus |
| arm_2L | 10846282..10846506 | 343..567 | 100 | <- | Minus |
| arm_2L | 10846573..10846898 | 17..342 | 100 | | Minus |
BS14870.complete Sequence
914 bp assembled on 2006-11-01
GenBank Submission: FJ637814
> BS14870.complete
GAAGTTATCAGTCGACATGGCCGCCAAAACACCGACATACCCAGATCTGG
GCAAGCTGGCCCGCGATCTCTTCAAGCGCGGCTACCATCCGGGCATCTGG
CAGATCGACTGCAAGACCCTGACCAATTCGGGGATTGAGTTCTTCACCAC
CGGCTTCGCCAGCCAGGACAACAGCAAGGTGACCGGCTCGCTTCAGAGCA
AGTACAAGATCGAGGACCAAGGCCTGACCCTAACCGAGCGATGGAACACG
GAGAACTGGCTCTTCGGTGAGATTATGCACCGGGATAAGTTGGCACAGGG
CCTGATGTTGGCCGTCGAGGCCAAGTTTCAGCCGGGATCAAATGAGGCGG
ATGGCAAGTTCAAGATGGGCTATGCCCAGGACAACTTTAACTTCCTGGCC
GACATTGGACTGAACTCGGAGCCGATACTCAACTGTTCGCTGGTTGTGGG
CCACAAGGAGTTCCTCGGCGGCGTGGGCACCGAATTTGACGTTGGCAACA
CCGAACTCAAGGGCTGGAAGGTGGCCCTTGGTTGGACAAATGAAACTGCC
ACCCTCCATGGCGAGCTGAAGAACGGCGACACCTGGTTGGCCTCGCTGTT
CTACAAGGCGAGCGAGAAGATCGATGCCGGTATCGAGGTAACCAAGGGAG
CCGGCGGCGGCGAAGCTGCCGAGGGTGAACAGCAGGGCGGAGATGTGGTC
GTCAATCTGGGCATGATCTACCACTTGGAGGAGGATGCCCTCGTACGCGC
CAAGGTCAACAACCTGGTGGAGCTGGGCCTGGGCTATGAACAGAAACTGC
GCGACGGCATCACCGCCTCCATATCCGCCGTGCTGGATTGCAACAACTTT
AAGGACGGAAACCATCGGTTCGGCGTGGGAATTGCCCTCCAGTGCTAAAA
GCTTTCTAGACCAT
BS14870.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:48:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Porin2-RB | 882 | CG17137-PB | 1..882 | 17..898 | 4410 | 100 | Plus |
| Porin2-RA | 882 | CG17137-PA | 1..882 | 17..898 | 4410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:48:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Porin2-RB | 1069 | CG17137-RB | 88..971 | 17..900 | 4420 | 100 | Plus |
| Porin2-RA | 1128 | CG17137-RA | 147..1030 | 17..900 | 4420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:48:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10845886..10846218 | 900..568 | 1665 | 100 | Minus |
| 2L | 23513712 | 2L | 10846573..10846898 | 342..17 | 1630 | 100 | Minus |
| 2L | 23513712 | 2L | 10846281..10846506 | 568..343 | 1130 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:48:31 has no hits.
BS14870.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:54 Download gff for
BS14870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Porin2-RA | 1..882 | 17..898 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:05:27 Download gff for
BS14870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Porin2-RA | 147..1035 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:33:50 Download gff for
BS14870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Porin2-RA | 147..1026 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:55 Download gff for
BS14870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Porin2-RA | 147..1035 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:26:46 Download gff for
BS14870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Porin2-RA | 147..1026 | 17..896 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:26:46 Download gff for
BS14870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10845890..10846218 | 568..896 | 100 | <- | Minus |
| 2L | 10846282..10846506 | 343..567 | 100 | <- | Minus |
| 2L | 10846573..10846898 | 17..342 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:33:50 Download gff for
BS14870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10846282..10846506 | 343..567 | 100 | <- | Minus |
| arm_2L | 10845890..10846218 | 568..896 | 100 | <- | Minus |
| arm_2L | 10846573..10846898 | 17..342 | 100 | | Minus |
BS14870.pep Sequence
Translation from 16 to 897
> BS14870.pep
MAAKTPTYPDLGKLARDLFKRGYHPGIWQIDCKTLTNSGIEFFTTGFASQ
DNSKVTGSLQSKYKIEDQGLTLTERWNTENWLFGEIMHRDKLAQGLMLAV
EAKFQPGSNEADGKFKMGYAQDNFNFLADIGLNSEPILNCSLVVGHKEFL
GGVGTEFDVGNTELKGWKVALGWTNETATLHGELKNGDTWLASLFYKASE
KIDAGIEVTKGAGGGEAAEGEQQGGDVVVNLGMIYHLEEDALVRAKVNNL
VELGLGYEQKLRDGITASISAVLDCNNFKDGNHRFGVGIALQC*
BS14870.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Porin2-PB | 293 | CG17137-PB | 1..293 | 1..293 | 1550 | 100 | Plus |
| Porin2-PA | 293 | CG17137-PA | 1..293 | 1..293 | 1550 | 100 | Plus |
| porin-PE | 282 | CG6647-PE | 4..281 | 6..292 | 643 | 42.4 | Plus |
| porin-PD | 282 | CG6647-PD | 4..281 | 6..292 | 643 | 42.4 | Plus |
| porin-PC | 282 | CG6647-PC | 4..281 | 6..292 | 643 | 42.4 | Plus |
