Clone Sequence Records
BS14872.3prime Sequence
594 bp (594 high quality bases) assembled on 2006-10-13
> BS14872.3prime
ATGGTCTAGAAAGCTTCTACTTCTTGCCAGATAGTTGCTTGTATAACTTG
GGCACATAGTCGTCCCACTGTGCCTGAAAAAAGTTTCCGGCAATGGGATC
TCCCAGCTTGTACTTGCTCATGAACTTGGAGGTGCTGAAATTGGCTCGCT
TGTCGCCGCTCGTTTTTGGGATTTTGGGCTCGTTGCAAGTGAGCTTTTGG
GGCTGTTTGAAGACCAGGAAGACGTAACGATGAAGCCCCGTGCCTTGCGG
CGGACCTGCACCCACATATTCGGTCAAAACTACGCCGTTCTCGACTTGGT
TCCCTGGAATATTGACCACCAGCCAGTGGTGCCACTCGCGGAACTTGGGC
TCCTTGCGACTGGGCGCATCCGGATCGGTCAGGAGGAGCGTGTAAAAGGC
ATTCGGATCTGCATCCCATTTCACCTTTGGCTGGCTCTGCACTTGCGTGG
GTGTCAATTCACCGCCTACATCCACCACCTGTCCACCACCATAAGTCACC
GTAAGCAAAGTGGCAGGACACGTCTTCAGGATATCCGGCACGATCTTGTG
CTTAGAGAAGCACACGGTGGAATCGGACATGTCGACTGATAACT
BS14872.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10298-PA | 564 | CG10298-RA | 1..564 | 580..17 | 2820 | 100 | Minus |
CG6180-PA | 774 | CG6180-RA | 416..455 | 381..342 | 175 | 97.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:04:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10298-RA | 745 | CG10298-RA | 69..641 | 580..8 | 2835 | 99.7 | Minus |
CG6180-RA | 1020 | CG6180-RA | 513..696 | 394..211 | 275 | 77.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:03:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6343203..6343695 | 500..8 | 2435 | 99.6 | Minus |
3R | 32079331 | 3R | 6343070..6343152 | 580..498 | 415 | 100 | Minus |
2L | 23513712 | 2L | 12708173..12708356 | 394..211 | 275 | 76.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:04:00 has no hits.
BS14872.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:21 Download gff for
BS14872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10298-PA | 1..564 | 17..580 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:29 Download gff for
BS14872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10298-RA | 59..643 | 3..589 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:38 Download gff for
BS14872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10298-RA | 59..643 | 3..589 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:38 Download gff for
BS14872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6343060..6343150 | 500..589 | 95 | -> | Minus |
3R | 6343204..6343697 | 3..499 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:29 Download gff for
BS14872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2168782..2168872 | 500..589 | 95 | -> | Minus |
arm_3R | 2168926..2169419 | 3..499 | 98 | | Minus |
BS14872.5prime Sequence
594 bp (594 high quality bases) assembled on 2006-10-13
> BS14872.5prime
GAAGTTATCAGTCGACATGTCCGATTCCACCGTGTGCTTCTCTAAGCACA
AGATCGTGCCGGATATCCTGAAGACGTGTCCTGCCACTTTGCTTACGGTG
ACTTATGGTGGTGGACAGGTGGTGGATGTAGGCGGTGAATTGACACCCAC
GCAAGTGCAGAGCCAGCCAAAGGTGAAATGGGATGCAGATCCGAATGCCT
TTTACACGCTCCTCCTGACCGATCCGGATGCGCCCAGTCGCAAGGAGCCC
AAGTTCCGCGAGTGGCACCACTGGCTGGTGGTCAATATTCCAGGGAACCA
AGTCGAGAACGGCGTAGTTTTGACCGAATATGTGGGTGCAGGTCCGCCGC
AAGGCACGGGGCTTCATCGTTACGTCTTCCTGGTCTTCAAACAGCCCCAA
AAGCTCACTTGCAACGAGCCCAAAATCCCAAAAACGAGCGGCGACAAGCG
AGCCAATTTCAGCACCTCCAAGTTCATGAGCAAGTACAAGCTGGGAGATC
CCATTGCCGGAAACTTTTTTCAGGCACAGTGGGACGACTATGTGCCCAAG
TTATACAAGCAACTATCTGGCAAGAAGTAGAAGCTTTCTAGACC
BS14872.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10298-PA | 564 | CG10298-RA | 1..564 | 17..580 | 2820 | 100 | Plus |
CG6180-PA | 774 | CG6180-RA | 416..455 | 216..255 | 175 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:14:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10298-RA | 745 | CG10298-RA | 69..641 | 17..589 | 2835 | 99.7 | Plus |
CG6180-RA | 1020 | CG6180-RA | 513..696 | 203..386 | 275 | 77.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:14:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6343203..6343695 | 97..589 | 2435 | 99.6 | Plus |
3R | 32079331 | 3R | 6343070..6343152 | 17..99 | 415 | 100 | Plus |
2L | 23513712 | 2L | 12708173..12708356 | 203..386 | 275 | 76.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:14:44 has no hits.
BS14872.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:22 Download gff for
BS14872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10298-PA | 1..564 | 17..580 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:04:38 Download gff for
BS14872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10298-RA | 59..643 | 8..594 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:31:18 Download gff for
BS14872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10298-RA | 59..643 | 8..594 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:31:18 Download gff for
BS14872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6343060..6343150 | 8..97 | 95 | -> | Plus |
3R | 6343204..6343697 | 98..594 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:04:38 Download gff for
BS14872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2168782..2168872 | 8..97 | 95 | -> | Plus |
arm_3R | 2168926..2169419 | 98..594 | 98 | | Plus |
BS14872.complete Sequence
596 bp assembled on 2006-11-01
GenBank Submission: FJ637815
> BS14872.complete
GAAGTTATCAGTCGACATGTCCGATTCCACCGTGTGCTTCTCTAAGCACA
AGATCGTGCCGGATATCCTGAAGACGTGTCCTGCCACTTTGCTTACGGTG
ACTTATGGTGGTGGACAGGTGGTGGATGTAGGCGGTGAATTGACACCCAC
GCAAGTGCAGAGCCAGCCAAAGGTGAAATGGGATGCAGATCCGAATGCCT
TTTACACGCTCCTCCTGACCGATCCGGATGCGCCCAGTCGCAAGGAGCCC
AAGTTCCGCGAGTGGCACCACTGGCTGGTGGTCAATATTCCAGGGAACCA
AGTCGAGAACGGCGTAGTTTTGACCGAATATGTGGGTGCAGGTCCGCCGC
AAGGCACGGGGCTTCATCGTTACGTCTTCCTGGTCTTCAAACAGCCCCAA
AAGCTCACTTGCAACGAGCCCAAAATCCCAAAAACGAGCGGCGACAAGCG
AGCCAATTTCAGCACCTCCAAGTTCATGAGCAAGTACAAGCTGGGAGATC
CCATTGCCGGAAACTTTTTTCAGGCACAGTGGGACGACTATGTGCCCAAG
TTATACAAGCAACTATCTGGCAAGAAGTAGAAGCTTTCTAGACCAT
BS14872.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:01:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10298-RA | 564 | CG10298-PA | 1..564 | 17..580 | 2820 | 100 | Plus |
CG6180-RA | 774 | CG6180-PA | 403..586 | 203..386 | 275 | 76.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:01:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10298-RA | 745 | CG10298-RA | 69..641 | 17..589 | 2835 | 99.7 | Plus |
CG6180-RA | 1020 | CG6180-RA | 513..696 | 203..386 | 275 | 76.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:01:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6343203..6343695 | 97..589 | 2435 | 99.6 | Plus |
3R | 32079331 | 3R | 6343070..6343152 | 17..99 | 415 | 100 | Plus |
2L | 23513712 | 2L | 12708173..12708356 | 203..386 | 275 | 76.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:01:24 has no hits.
BS14872.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:39 Download gff for
BS14872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10298-RA | 1..564 | 17..580 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:33 Download gff for
BS14872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10298-RA | 59..643 | 8..594 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:04:50 Download gff for
BS14872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10298-RA | 69..632 | 17..580 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:39 Download gff for
BS14872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10298-RA | 59..643 | 8..594 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:11 Download gff for
BS14872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10298-RA | 69..632 | 17..580 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:11 Download gff for
BS14872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6343070..6343150 | 17..97 | 100 | -> | Plus |
3R | 6343204..6343686 | 98..580 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:50 Download gff for
BS14872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2168792..2168872 | 17..97 | 100 | -> | Plus |
arm_3R | 2168926..2169408 | 98..580 | 100 | | Plus |
BS14872.pep Sequence
Translation from 16 to 579
> BS14872.pep
MSDSTVCFSKHKIVPDILKTCPATLLTVTYGGGQVVDVGGELTPTQVQSQ
PKVKWDADPNAFYTLLLTDPDAPSRKEPKFREWHHWLVVNIPGNQVENGV
VLTEYVGAGPPQGTGLHRYVFLVFKQPQKLTCNEPKIPKTSGDKRANFST
SKFMSKYKLGDPIAGNFFQAQWDDYVPKLYKQLSGKK*
BS14872.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10298-PA | 187 | CG10298-PA | 1..187 | 1..187 | 1016 | 100 | Plus |
CG6180-PA | 257 | CG6180-PA | 82..255 | 10..183 | 572 | 59.8 | Plus |
CG17919-PA | 202 | CG17919-PA | 24..200 | 8..184 | 564 | 57.6 | Plus |
Pebp1-PA | 176 | CG18594-PA | 6..171 | 13..179 | 525 | 58.7 | Plus |
a5-PA | 210 | CG5430-PA | 34..207 | 12..185 | 448 | 43.7 | Plus |