Clone BS14872 Report

Search the DGRC for BS14872

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:148
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG10298-RA
Protein status:BS14872.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14872.3prime Sequence

594 bp (594 high quality bases) assembled on 2006-10-13

> BS14872.3prime
ATGGTCTAGAAAGCTTCTACTTCTTGCCAGATAGTTGCTTGTATAACTTG
GGCACATAGTCGTCCCACTGTGCCTGAAAAAAGTTTCCGGCAATGGGATC
TCCCAGCTTGTACTTGCTCATGAACTTGGAGGTGCTGAAATTGGCTCGCT
TGTCGCCGCTCGTTTTTGGGATTTTGGGCTCGTTGCAAGTGAGCTTTTGG
GGCTGTTTGAAGACCAGGAAGACGTAACGATGAAGCCCCGTGCCTTGCGG
CGGACCTGCACCCACATATTCGGTCAAAACTACGCCGTTCTCGACTTGGT
TCCCTGGAATATTGACCACCAGCCAGTGGTGCCACTCGCGGAACTTGGGC
TCCTTGCGACTGGGCGCATCCGGATCGGTCAGGAGGAGCGTGTAAAAGGC
ATTCGGATCTGCATCCCATTTCACCTTTGGCTGGCTCTGCACTTGCGTGG
GTGTCAATTCACCGCCTACATCCACCACCTGTCCACCACCATAAGTCACC
GTAAGCAAAGTGGCAGGACACGTCTTCAGGATATCCGGCACGATCTTGTG
CTTAGAGAAGCACACGGTGGAATCGGACATGTCGACTGATAACT

BS14872.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG10298-PA 564 CG10298-RA 1..564 580..17 2820 100 Minus
CG6180-PA 774 CG6180-RA 416..455 381..342 175 97.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:04:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG10298-RA 745 CG10298-RA 69..641 580..8 2835 99.7 Minus
CG6180-RA 1020 CG6180-RA 513..696 394..211 275 77.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:03:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6343203..6343695 500..8 2435 99.6 Minus
3R 32079331 3R 6343070..6343152 580..498 415 100 Minus
2L 23513712 2L 12708173..12708356 394..211 275 76.6 Minus
Blast to na_te.dros performed on 2015-02-12 04:04:00 has no hits.

BS14872.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:21 Download gff for BS14872.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10298-PA 1..564 17..580 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:29 Download gff for BS14872.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10298-RA 59..643 3..589 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:38 Download gff for BS14872.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10298-RA 59..643 3..589 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:38 Download gff for BS14872.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6343060..6343150 500..589 95 -> Minus
3R 6343204..6343697 3..499 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:29 Download gff for BS14872.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2168782..2168872 500..589 95 -> Minus
arm_3R 2168926..2169419 3..499 98   Minus

BS14872.5prime Sequence

594 bp (594 high quality bases) assembled on 2006-10-13

> BS14872.5prime
GAAGTTATCAGTCGACATGTCCGATTCCACCGTGTGCTTCTCTAAGCACA
AGATCGTGCCGGATATCCTGAAGACGTGTCCTGCCACTTTGCTTACGGTG
ACTTATGGTGGTGGACAGGTGGTGGATGTAGGCGGTGAATTGACACCCAC
GCAAGTGCAGAGCCAGCCAAAGGTGAAATGGGATGCAGATCCGAATGCCT
TTTACACGCTCCTCCTGACCGATCCGGATGCGCCCAGTCGCAAGGAGCCC
AAGTTCCGCGAGTGGCACCACTGGCTGGTGGTCAATATTCCAGGGAACCA
AGTCGAGAACGGCGTAGTTTTGACCGAATATGTGGGTGCAGGTCCGCCGC
AAGGCACGGGGCTTCATCGTTACGTCTTCCTGGTCTTCAAACAGCCCCAA
AAGCTCACTTGCAACGAGCCCAAAATCCCAAAAACGAGCGGCGACAAGCG
AGCCAATTTCAGCACCTCCAAGTTCATGAGCAAGTACAAGCTGGGAGATC
CCATTGCCGGAAACTTTTTTCAGGCACAGTGGGACGACTATGTGCCCAAG
TTATACAAGCAACTATCTGGCAAGAAGTAGAAGCTTTCTAGACC

BS14872.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10298-PA 564 CG10298-RA 1..564 17..580 2820 100 Plus
CG6180-PA 774 CG6180-RA 416..455 216..255 175 97.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG10298-RA 745 CG10298-RA 69..641 17..589 2835 99.7 Plus
CG6180-RA 1020 CG6180-RA 513..696 203..386 275 77.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6343203..6343695 97..589 2435 99.6 Plus
3R 32079331 3R 6343070..6343152 17..99 415 100 Plus
2L 23513712 2L 12708173..12708356 203..386 275 76.6 Plus
Blast to na_te.dros performed on 2015-02-11 09:14:44 has no hits.

BS14872.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:22 Download gff for BS14872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10298-PA 1..564 17..580 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:04:38 Download gff for BS14872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10298-RA 59..643 8..594 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:31:18 Download gff for BS14872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10298-RA 59..643 8..594 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:31:18 Download gff for BS14872.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6343060..6343150 8..97 95 -> Plus
3R 6343204..6343697 98..594 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:04:38 Download gff for BS14872.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2168782..2168872 8..97 95 -> Plus
arm_3R 2168926..2169419 98..594 98   Plus

BS14872.complete Sequence

596 bp assembled on 2006-11-01

GenBank Submission: FJ637815

> BS14872.complete
GAAGTTATCAGTCGACATGTCCGATTCCACCGTGTGCTTCTCTAAGCACA
AGATCGTGCCGGATATCCTGAAGACGTGTCCTGCCACTTTGCTTACGGTG
ACTTATGGTGGTGGACAGGTGGTGGATGTAGGCGGTGAATTGACACCCAC
GCAAGTGCAGAGCCAGCCAAAGGTGAAATGGGATGCAGATCCGAATGCCT
TTTACACGCTCCTCCTGACCGATCCGGATGCGCCCAGTCGCAAGGAGCCC
AAGTTCCGCGAGTGGCACCACTGGCTGGTGGTCAATATTCCAGGGAACCA
AGTCGAGAACGGCGTAGTTTTGACCGAATATGTGGGTGCAGGTCCGCCGC
AAGGCACGGGGCTTCATCGTTACGTCTTCCTGGTCTTCAAACAGCCCCAA
AAGCTCACTTGCAACGAGCCCAAAATCCCAAAAACGAGCGGCGACAAGCG
AGCCAATTTCAGCACCTCCAAGTTCATGAGCAAGTACAAGCTGGGAGATC
CCATTGCCGGAAACTTTTTTCAGGCACAGTGGGACGACTATGTGCCCAAG
TTATACAAGCAACTATCTGGCAAGAAGTAGAAGCTTTCTAGACCAT

BS14872.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:01:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG10298-RA 564 CG10298-PA 1..564 17..580 2820 100 Plus
CG6180-RA 774 CG6180-PA 403..586 203..386 275 76.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:01:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG10298-RA 745 CG10298-RA 69..641 17..589 2835 99.7 Plus
CG6180-RA 1020 CG6180-RA 513..696 203..386 275 76.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:01:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6343203..6343695 97..589 2435 99.6 Plus
3R 32079331 3R 6343070..6343152 17..99 415 100 Plus
2L 23513712 2L 12708173..12708356 203..386 275 76.6 Plus
Blast to na_te.dros performed on 2014-11-28 01:01:24 has no hits.

BS14872.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:39 Download gff for BS14872.complete
Subject Subject Range Query Range Percent Splice Strand
CG10298-RA 1..564 17..580 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:33 Download gff for BS14872.complete
Subject Subject Range Query Range Percent Splice Strand
CG10298-RA 59..643 8..594 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:04:50 Download gff for BS14872.complete
Subject Subject Range Query Range Percent Splice Strand
CG10298-RA 69..632 17..580 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:39 Download gff for BS14872.complete
Subject Subject Range Query Range Percent Splice Strand
CG10298-RA 59..643 8..594 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:11 Download gff for BS14872.complete
Subject Subject Range Query Range Percent Splice Strand
CG10298-RA 69..632 17..580 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:11 Download gff for BS14872.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6343070..6343150 17..97 100 -> Plus
3R 6343204..6343686 98..580 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:50 Download gff for BS14872.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2168792..2168872 17..97 100 -> Plus
arm_3R 2168926..2169408 98..580 100   Plus

BS14872.pep Sequence

Translation from 16 to 579

> BS14872.pep
MSDSTVCFSKHKIVPDILKTCPATLLTVTYGGGQVVDVGGELTPTQVQSQ
PKVKWDADPNAFYTLLLTDPDAPSRKEPKFREWHHWLVVNIPGNQVENGV
VLTEYVGAGPPQGTGLHRYVFLVFKQPQKLTCNEPKIPKTSGDKRANFST
SKFMSKYKLGDPIAGNFFQAQWDDYVPKLYKQLSGKK*

BS14872.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG10298-PA 187 CG10298-PA 1..187 1..187 1016 100 Plus
CG6180-PA 257 CG6180-PA 82..255 10..183 572 59.8 Plus
CG17919-PA 202 CG17919-PA 24..200 8..184 564 57.6 Plus
Pebp1-PA 176 CG18594-PA 6..171 13..179 525 58.7 Plus
a5-PA 210 CG5430-PA 34..207 12..185 448 43.7 Plus