Clone BS14875 Report

Search the DGRC for BS14875

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:148
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCG9451-RA
Protein status:BS14875.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14875.3prime Sequence

865 bp (847 high quality bases) assembled on 2006-10-13

> BS14875.3prime
ATGGTCTAGAAAGCTTCTAGTGATAGCTTATCTTAGCGCCGCCTTGAGTT
CCCTTCGCTTTGCACAACTCTGCATAAGGCGCATCGGGAATTATGTCCTT
GGTAAGTTCCAATAACTTGCCAATGGGACACTGTTTCTCGCAGCCGGGAA
TCTGCAGCTGCTGAGGCTCCTTGTGGGGATCGTTTTGGAAGTAGATTTCC
AGGAAATACTCCCCAGTTTGCGGGTTTTGATGCAGCTCAAATGCAATCAA
CGACGAGAAGCGGGGCATCTGAGCCTCCCAAACATTCAAGGCGGATAGCA
CATTTGTGATGGTCCAATCGTGACCGCAGGAAAGGAACATCTTGCGATTG
GCTGGCTTCAATGCTCCGGAGATCCTGTCCTGCATTTGCTTCAACAGCAG
CTCCACGAAGAAACCCCCTTTCATTTTGCGCTGCTCGGTCGTATAGGCAT
CGTAGACATATGACTTTTCAGCCAAGGGTAGCATCTTCTCCGGAAAGTAG
TCATTGGTCCACGAGGGCAACTGCAGGCCGAAAGTCTGTTCACAGAGCAG
GGTGATGAACACATTGGTGACATCGTGGGCATGGGTAATATTGAGTCCGG
TGTGAGTGGTCAGTTCGCGTAGTAAATCCGAGCTCTCGGCATGCAGCTTT
TTGACCTCGGGAAGTTCTATTACCTCCAGAACAGACTCATCGTATCGGGG
GCAGGGTGCCTTCATTCTAATGTGCACATCAGTTTCCTCTGGTTCCATCA
CAATGGGTATGGGCTGCCAATTGAGCAGCTGGTTCCACTCCATGGGAGTG
TTCTCCGGTGGAAAGAGTCCGGCGAGGACCATTTGCATAGACATCAAGGT
GCGCGGTGACTCCAA

BS14875.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG9451-PA 1233 CG9451-RA 387..1233 863..17 4235 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:52:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG9451-RB 1592 CG9451-RB 465..1313 863..15 4245 100 Minus
CG9451-RA 1387 CG9451-RA 465..1313 863..15 4245 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:52:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19498476..19499186 15..725 3555 100 Plus
3L 28110227 3L 19499256..19499394 725..863 695 100 Plus
Blast to na_te.dros performed on 2015-02-03 06:52:23 has no hits.

BS14875.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:24 Download gff for BS14875.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9451-PA 387..1233 17..863 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:42 Download gff for BS14875.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9451-RA 465..1322 7..863 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:12 Download gff for BS14875.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9451-RA 465..1322 7..863 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:12 Download gff for BS14875.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19498467..19499185 7..724 99 <- Plus
3L 19499256..19499394 725..863 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:42 Download gff for BS14875.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19491567..19492285 7..724 99 <- Plus
arm_3L 19492356..19492494 725..863 100   Plus

BS14875.5prime Sequence

839 bp (775 high quality bases) assembled on 2006-10-13

> BS14875.5prime
GAAGTTATCAGTCGACATGCGAAAGTTTCTCGGTCTGCTGCTCACCGTGA
GCTGTGTTCTGATCGCCCGCGGCGGCGTCATGGAGATTGAAGTGCCGCAG
GAAGTCACGGAAGGTCCTGGGGATGTCTCTCAAAGCTCAGCGGAAATAAG
CCATGCGAAGGACAGTGTTAGCAACTCAACCCTGAAGTTGGTTCACGTGC
TTTTTCGTCATGGTCCTCGAACTCCAGTGAGCACTTATCCCAACGATCCG
TATATCAACGAAACCTACGAGCCCTTCGGTTGGGGAGCACTCACCAATGG
TGCTAAAGTGGAGCTGTATAAAATAGGCAAGCAACTGCGGCAGCGCTATA
AAGATTTCCTCCCGGCGTATTATCAGCCTGACGCGATCCGTGCCCAATCT
TCGGAGTCACCGCGCACCTTGATGTCTATGCAAATGGTCCTCGCCGGACT
CTTTCCACCGGAGAACACTCCCATGGAGTGGAACCAGCTGCTCAATTGGC
AGCCCATACCCATTGTGATGGAACCAGAGGAAACTGATGTGCACATTAGA
ATGAAGGCACCCTGCCCCCGATACGATGAGTCTGTTCTGGAGGTAATAGA
ACTTCCCGAGGTCAAAAAGCTGCATGCCGAGAGCTCGGATTTACTACGCG
AACTGACCACTCACACCGGACTCAATATTACCCATGCCCACGATGTCACC
AATGTGTTCATCACCCTGCTCTGTGAACAGACTTTCGGCCTGCAGTTGCC
CTCGTGGACCAATGACTACTTTCCGGAGAAGATGCTACCCTTGGCTGAAA
AGTCATATGTCTACGATGCCTATACGACCGAGCAGCGCA

BS14875.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG9451-PA 1233 CG9451-RA 1..823 17..839 4115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG9451-RB 1592 CG9451-RB 79..901 17..839 4115 100 Plus
CG9451-RA 1387 CG9451-RA 79..901 17..839 4115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19498888..19499186 839..541 1495 100 Minus
3L 28110227 3L 19500538..19500720 199..17 915 100 Minus
3L 28110227 3L 19499256..19499414 541..383 795 100 Minus
3L 28110227 3L 19499622..19499722 299..199 505 100 Minus
3L 28110227 3L 19499474..19499558 383..299 425 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:08:42 has no hits.

BS14875.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:25 Download gff for BS14875.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9451-PA 1..822 17..838 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:45:03 Download gff for BS14875.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9451-RA 79..900 17..838 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:22:13 Download gff for BS14875.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9451-RA 79..900 17..838 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:22:13 Download gff for BS14875.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19500538..19500720 17..199 100   Minus
3L 19498889..19499185 542..838 100 <- Minus
3L 19499256..19499414 383..541 100 <- Minus
3L 19499475..19499558 299..382 100 <- Minus
3L 19499623..19499721 200..298 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:45:03 Download gff for BS14875.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19492356..19492514 383..541 100 <- Minus
arm_3L 19491989..19492285 542..838 100 <- Minus
arm_3L 19492575..19492658 299..382 100 <- Minus
arm_3L 19492723..19492821 200..298 100 <- Minus
arm_3L 19493638..19493820 17..199 100   Minus

BS14875.complete Sequence

1265 bp assembled on 2006-11-01

GenBank Submission: FJ637816

> BS14875.complete
GAAGTTATCAGTCGACATGCGAAAGTTTCTCGGTCTGCTGCTCACCGTGA
GCTGTGTTCTGATCGCCCGCGGCGGCGTCATGGAGATTGAAGTGCCGCAG
GAAGTCACGGAAGGTCCTGGGGATGTCTCTCAAAGCTCAGCGGAAATAAG
CCATGCGAAGGACAGTGTTAGCAACTCAACCCTGAAGTTGGTTCACGTGC
TTTTTCGTCATGGTCCTCGAACTCCAGTGAGCACTTATCCCAACGATCCG
TATATCAACGAAACCTACGAGCCCTTCGGTTGGGGAGCACTCACCAATGG
TGCTAAAGTGGAGCTGTATAAAATAGGCAAGCAACTGCGGCAGCGCTATA
AAGATTTCCTCCCGGCGTATTATCAGCCTGACGCGATCCGTGCCCAATCT
TCGGAGTCACCGCGCACCTTGATGTCTATGCAAATGGTCCTCGCCGGACT
CTTTCCACCGGAGAACACTCCCATGGAGTGGAACCAGCTGCTCAATTGGC
AGCCCATACCCATTGTGATGGAACCAGAGGAAACTGATGTGCACATTAGA
ATGAAGGCACCCTGCCCCCGATACGATGAGTCTGTTCTGGAGGTAATAGA
ACTTCCCGAGGTCAAAAAGCTGCATGCCGAGAGCTCGGATTTACTACGCG
AACTGACCACTCACACCGGACTCAATATTACCCATGCCCACGATGTCACC
AATGTGTTCATCACCCTGCTCTGTGAACAGACTTTCGGCCTGCAGTTGCC
CTCGTGGACCAATGACTACTTTCCGGAGAAGATGCTACCCTTGGCTGAAA
AGTCATATGTCTACGATGCCTATACGACCGAGCAGCGCAAAATGAAAGGG
GGTTTCTTCGTGGAGCTGCTGTTGAAGCAAATGCAGGACAGGATCTCCGG
AGCATTGAAGCCAGCCAATCGCAAGATGTTCCTTTCCTGCGGTCACGATT
GGACCATCACAAATGTGCTATCCGCCTTGAATGTTTGGGAGGCTCAGATG
CCCCGCTTCTCGTCGTTGATTGCATTTGAGCTGCATCAAAACCCGCAAAC
TGGGGAGTATTTCCTGGAAATCTACTTCCAAAACGATCCCCACAAGGAGC
CTCAGCAGCTGCAGATTCCCGGCTGCGAGAAACAGTGTCCCATTGGCAAG
TTATTGGAACTTACCAAGGACATAATTCCCGATGCGCCTTATGCAGAGTT
GTGCAAAGCGAAGGGAACTCAAGGCGGCGCTAAGATAAGCTATCACTAGA
AGCTTTCTAGACCAT

BS14875.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG9451-RB 1233 CG9451-PB 1..1233 17..1249 6165 100 Plus
CG9451-RA 1233 CG9451-PA 1..1233 17..1249 6165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:48:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG9451-RB 1592 CG9451-RB 79..1313 17..1251 6175 100 Plus
CG9451-RA 1387 CG9451-RA 79..1313 17..1251 6175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19498476..19499186 1251..541 3555 100 Minus
3L 28110227 3L 19500538..19500720 199..17 915 100 Minus
3L 28110227 3L 19499256..19499414 541..383 795 100 Minus
3L 28110227 3L 19499622..19499722 299..199 505 100 Minus
3L 28110227 3L 19499474..19499558 383..299 425 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:48:24 has no hits.

BS14875.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:34 Download gff for BS14875.complete
Subject Subject Range Query Range Percent Splice Strand
CG9451-RA 1..1233 17..1249 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:18 Download gff for BS14875.complete
Subject Subject Range Query Range Percent Splice Strand
CG9451-RA 93..1336 17..1259 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:11 Download gff for BS14875.complete
Subject Subject Range Query Range Percent Splice Strand
CG9451-RA 79..1311 17..1249 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:34 Download gff for BS14875.complete
Subject Subject Range Query Range Percent Splice Strand
CG9451-RA 93..1336 17..1259 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:41 Download gff for BS14875.complete
Subject Subject Range Query Range Percent Splice Strand
CG9451-RA 79..1311 17..1249 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:41 Download gff for BS14875.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19498478..19499185 542..1249 100 <- Minus
3L 19499256..19499414 383..541 100 <- Minus
3L 19499475..19499558 299..382 100 <- Minus
3L 19499623..19499721 200..298 100 <- Minus
3L 19500538..19500720 17..199 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:11 Download gff for BS14875.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19491578..19492285 542..1249 100 <- Minus
arm_3L 19492356..19492514 383..541 100 <- Minus
arm_3L 19492575..19492658 299..382 100 <- Minus
arm_3L 19492723..19492821 200..298 100 <- Minus
arm_3L 19493638..19493820 17..199 100   Minus

BS14875.pep Sequence

Translation from 16 to 1248

> BS14875.pep
MRKFLGLLLTVSCVLIARGGVMEIEVPQEVTEGPGDVSQSSAEISHAKDS
VSNSTLKLVHVLFRHGPRTPVSTYPNDPYINETYEPFGWGALTNGAKVEL
YKIGKQLRQRYKDFLPAYYQPDAIRAQSSESPRTLMSMQMVLAGLFPPEN
TPMEWNQLLNWQPIPIVMEPEETDVHIRMKAPCPRYDESVLEVIELPEVK
KLHAESSDLLRELTTHTGLNITHAHDVTNVFITLLCEQTFGLQLPSWTND
YFPEKMLPLAEKSYVYDAYTTEQRKMKGGFFVELLLKQMQDRISGALKPA
NRKMFLSCGHDWTITNVLSALNVWEAQMPRFSSLIAFELHQNPQTGEYFL
EIYFQNDPHKEPQQLQIPGCEKQCPIGKLLELTKDIIPDAPYAELCKAKG
TQGGAKISYH*

BS14875.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG9451-PB 410 CG9451-PB 1..410 1..410 2177 100 Plus
CG9451-PA 410 CG9451-PA 1..410 1..410 2177 100 Plus
CG9449-PK 391 CG9449-PK 34..379 54..399 1038 52.9 Plus
CG9449-PH 404 CG9449-PH 47..392 54..399 1038 52.9 Plus
CG9449-PG 404 CG9449-PG 47..392 54..399 1038 52.9 Plus