Clone Sequence Records
BS14876.3prime Sequence
666 bp (666 high quality bases) assembled on 2006-10-13
> BS14876.3prime
ATGGTCTAGAAAGCTTTCAATTCGAAACAGCGTAATAGTCAGAGGCGCTC
ACTTTATGAGGACCTCCATAGAAGTCCAGAACAAAGATATTGCTAATTTC
CAGTTCGCAAAGGTAGAAATTGTGAGCTTTTACCCAATTGATGGCAGCTG
GATGACGCCTCACATAGGCATCCAGCGATGGCTGATAGCTTTTGTCGCTA
GGATCCATCTTCTTCACCTGTCCACTGATCATGGAACGGGCACATGTAGG
CTCCATGGGATCCTTTCCGCCCTCCTTGCATCTTAGGGTCTGCTCGTCAC
TGAACAGGAGTGTGACCTTGTTGTCCTTCTGCCAGTCGGGACCAGTGAAG
TCCAAATCGGTTAGCAGGAATCGAATACGTCCAGTGGACCTGTTATTAGC
ATCGCTGTCGTCGATGGAGATAATGTTGACCATGGGATACCCCTTCACCC
GTTCGTTGGTGGAGAGACTTCCCACAGCCGCCCAATTGGCGCGATGGACC
AAATCTCTGGCGATCTTGGCGTGATTTAACTCTTGCTCTCGCTTATATTC
TCTAATTATACGCTCATCTTTCCGGCGGGAGTAACCGGAAGAGGGGTCCA
GGCTCACGAGGGCCAAAATCAGGGCGAATAGTAGGGAGTGAAAGGTTTTC
ATGTCGACTGATAACT
BS14876.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5413-PA | 636 | CREG-RA | 1..636 | 652..17 | 3180 | 100 | Minus |
CG5413-PB | 636 | CREG-RB | 1..636 | 652..17 | 3180 | 100 | Minus |
CG5413-PC | 522 | CREG-RC | 1..444 | 652..209 | 2220 | 100 | Minus |
CG5413-PC | 522 | CREG-RC | 442..522 | 129..49 | 405 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:28:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CREG-RD | 962 | CG5413-RD | 107..743 | 653..17 | 3185 | 100 | Minus |
CREG-RB | 967 | CG5413-RB | 112..748 | 653..17 | 3185 | 100 | Minus |
CREG-RA | 899 | CG5413-RA | 50..686 | 653..17 | 3185 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:28:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17393816..17394260 | 209..653 | 2225 | 100 | Plus |
3R | 32079331 | 3R | 17393491..17393602 | 17..128 | 560 | 100 | Plus |
3R | 32079331 | 3R | 17393673..17393758 | 127..212 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:28:26 has no hits.
BS14876.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:25 Download gff for
BS14876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5413-PB | 1..636 | 17..652 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:29:50 Download gff for
BS14876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RA | 38..686 | 17..664 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:47 Download gff for
BS14876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RA | 38..686 | 17..664 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:47 Download gff for
BS14876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17393491..17393600 | 17..126 | 100 | <- | Plus |
3R | 17393673..17393754 | 127..208 | 100 | <- | Plus |
3R | 17393816..17394272 | 209..664 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:29:50 Download gff for
BS14876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13219213..13219322 | 17..126 | 100 | <- | Plus |
arm_3R | 13219395..13219476 | 127..208 | 100 | <- | Plus |
arm_3R | 13219538..13219994 | 209..664 | 98 | | Plus |
BS14876.5prime Sequence
666 bp (666 high quality bases) assembled on 2006-10-13
> BS14876.5prime
GAAGTTATCAGTCGACATGAAAACCTTTCACTCCCTACTATTCGCCCTGA
TTTTGGCCCTCGTGAGCCTGGACCCCTCTTCCGGTTACTCCCGCCGGAAA
GATGAGCGTATAATTAGAGAATATAAGCGAGAGCAAGAGTTAAATCACGC
CAAGATCGCCAGAGATTTGGTCCATCGCGCCAATTGGGCGGCTGTGGGAA
GTCTCTCCACCAACGAACGGGTGAAGGGGTATCCCATGGTCAACATTATC
TCCATCGACGACAGCGATGCTAATAACAGGTCCACTGGACGTATTCGATT
CCTGCTAACCGATTTGGACTTCACTGGTCCCGACTGGCAGAAGGACAACA
AGGTCACACTCCTGTTCAGTGACGAGCAGACCCTAAGATGCAAGGAGGGC
GGAAAGGATCCCATGGAGCCTACATGTGCCCGTTCCATGATCAGTGGACA
GGTGAAGAAGATGGATCCTAGCGACAAAAGCTATCAGCCATCGCTGGATG
CCTATGTGAGGCGTCATCCAGCTGCCATCAATTGGGTAAAAGCTCACAAT
TTCTACCTTTGCGAACTGGAAATTAGCAATATCTTTGTTCTGGACTTCTA
TGGAGGTCCTCATAAAGTGAGCGCCTCTGACTATTACGCTGTTTCGAATT
GAAAGCTTTCTAGACC
BS14876.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5413-PA | 636 | CREG-RA | 1..636 | 17..652 | 3180 | 100 | Plus |
CG5413-PB | 636 | CREG-RB | 1..636 | 17..652 | 3180 | 100 | Plus |
CG5413-PC | 522 | CREG-RC | 1..444 | 17..460 | 2220 | 100 | Plus |
CG5413-PC | 522 | CREG-RC | 442..522 | 540..620 | 405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:55:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CREG-RD | 962 | CG5413-RD | 107..743 | 16..652 | 3185 | 100 | Plus |
CREG-RB | 967 | CG5413-RB | 112..748 | 16..652 | 3185 | 100 | Plus |
CREG-RA | 899 | CG5413-RA | 50..686 | 16..652 | 3185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:55:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17393816..17394260 | 460..16 | 2225 | 100 | Minus |
3R | 32079331 | 3R | 17393491..17393602 | 652..541 | 560 | 100 | Minus |
3R | 32079331 | 3R | 17393673..17393758 | 542..457 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:55:40 has no hits.
BS14876.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:26 Download gff for
BS14876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5413-PB | 1..636 | 17..652 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:45:10 Download gff for
BS14876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RA | 38..686 | 5..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:51:23 Download gff for
BS14876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RA | 38..686 | 5..652 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:51:23 Download gff for
BS14876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17393491..17393600 | 543..652 | 100 | <- | Minus |
3R | 17393673..17393754 | 461..542 | 100 | <- | Minus |
3R | 17393816..17394272 | 5..460 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:10 Download gff for
BS14876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13219213..13219322 | 543..652 | 100 | <- | Minus |
arm_3R | 13219395..13219476 | 461..542 | 100 | <- | Minus |
arm_3R | 13219538..13219994 | 5..460 | 98 | | Minus |
BS14876.complete Sequence
668 bp assembled on 2006-11-01
GenBank Submission: FJ637817
> BS14876.complete
GAAGTTATCAGTCGACATGAAAACCTTTCACTCCCTACTATTCGCCCTGA
TTTTGGCCCTCGTGAGCCTGGACCCCTCTTCCGGTTACTCCCGCCGGAAA
GATGAGCGTATAATTAGAGAATATAAGCGAGAGCAAGAGTTAAATCACGC
CAAGATCGCCAGAGATTTGGTCCATCGCGCCAATTGGGCGGCTGTGGGAA
GTCTCTCCACCAACGAACGGGTGAAGGGGTATCCCATGGTCAACATTATC
TCCATCGACGACAGCGATGCTAATAACAGGTCCACTGGACGTATTCGATT
CCTGCTAACCGATTTGGACTTCACTGGTCCCGACTGGCAGAAGGACAACA
AGGTCACACTCCTGTTCAGTGACGAGCAGACCCTAAGATGCAAGGAGGGC
GGAAAGGATCCCATGGAGCCTACATGTGCCCGTTCCATGATCAGTGGACA
GGTGAAGAAGATGGATCCTAGCGACAAAAGCTATCAGCCATCGCTGGATG
CCTATGTGAGGCGTCATCCAGCTGCCATCAATTGGGTAAAAGCTCACAAT
TTCTACCTTTGCGAACTGGAAATTAGCAATATCTTTGTTCTGGACTTCTA
TGGAGGTCCTCATAAAGTGAGCGCCTCTGACTATTACGCTGTTTCGAATT
GAAAGCTTTCTAGACCAT
BS14876.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:58:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CREG-RD | 636 | CG5413-PD | 1..636 | 17..652 | 3180 | 100 | Plus |
CREG-RB | 636 | CG5413-PB | 1..636 | 17..652 | 3180 | 100 | Plus |
CREG-RA | 636 | CG5413-PA | 1..636 | 17..652 | 3180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:58:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CREG-RD | 962 | CG5413-RD | 107..743 | 16..652 | 3185 | 100 | Plus |
CREG-RB | 967 | CG5413-RB | 112..748 | 16..652 | 3185 | 100 | Plus |
CREG-RA | 899 | CG5413-RA | 50..686 | 16..652 | 3185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:58:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17393816..17394260 | 460..16 | 2225 | 100 | Minus |
3R | 32079331 | 3R | 17393491..17393602 | 652..541 | 560 | 100 | Minus |
3R | 32079331 | 3R | 17393673..17393758 | 542..457 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:58:04 has no hits.
BS14876.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:35 Download gff for
BS14876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RB | 1..636 | 17..652 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:19 Download gff for
BS14876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RB | 46..691 | 9..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:40 Download gff for
BS14876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RA | 51..685 | 17..651 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:35 Download gff for
BS14876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RB | 46..691 | 9..652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:59 Download gff for
BS14876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RA | 51..685 | 17..651 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:59 Download gff for
BS14876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17393492..17393600 | 543..651 | 100 | <- | Minus |
3R | 17393673..17393754 | 461..542 | 100 | <- | Minus |
3R | 17393816..17394259 | 17..460 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:40 Download gff for
BS14876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13219214..13219322 | 543..651 | 100 | <- | Minus |
arm_3R | 13219395..13219476 | 461..542 | 100 | <- | Minus |
arm_3R | 13219538..13219981 | 17..460 | 100 | | Minus |
BS14876.pep Sequence
Translation from 16 to 651
> BS14876.pep
MKTFHSLLFALILALVSLDPSSGYSRRKDERIIREYKREQELNHAKIARD
LVHRANWAAVGSLSTNERVKGYPMVNIISIDDSDANNRSTGRIRFLLTDL
DFTGPDWQKDNKVTLLFSDEQTLRCKEGGKDPMEPTCARSMISGQVKKMD
PSDKSYQPSLDAYVRRHPAAINWVKAHNFYLCELEISNIFVLDFYGGPHK
VSASDYYAVSN*
BS14876.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CREG-PD | 211 | CG5413-PD | 1..211 | 1..211 | 1107 | 100 | Plus |
CREG-PB | 211 | CG5413-PB | 1..211 | 1..211 | 1107 | 100 | Plus |
CREG-PA | 211 | CG5413-PA | 1..211 | 1..211 | 1107 | 100 | Plus |
CREG-PC | 173 | CG5413-PC | 1..149 | 1..149 | 766 | 99.3 | Plus |