Clone BS14876 Report

Search the DGRC for BS14876

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:148
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCREG-RA
Protein status:BS14876.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14876.3prime Sequence

666 bp (666 high quality bases) assembled on 2006-10-13

> BS14876.3prime
ATGGTCTAGAAAGCTTTCAATTCGAAACAGCGTAATAGTCAGAGGCGCTC
ACTTTATGAGGACCTCCATAGAAGTCCAGAACAAAGATATTGCTAATTTC
CAGTTCGCAAAGGTAGAAATTGTGAGCTTTTACCCAATTGATGGCAGCTG
GATGACGCCTCACATAGGCATCCAGCGATGGCTGATAGCTTTTGTCGCTA
GGATCCATCTTCTTCACCTGTCCACTGATCATGGAACGGGCACATGTAGG
CTCCATGGGATCCTTTCCGCCCTCCTTGCATCTTAGGGTCTGCTCGTCAC
TGAACAGGAGTGTGACCTTGTTGTCCTTCTGCCAGTCGGGACCAGTGAAG
TCCAAATCGGTTAGCAGGAATCGAATACGTCCAGTGGACCTGTTATTAGC
ATCGCTGTCGTCGATGGAGATAATGTTGACCATGGGATACCCCTTCACCC
GTTCGTTGGTGGAGAGACTTCCCACAGCCGCCCAATTGGCGCGATGGACC
AAATCTCTGGCGATCTTGGCGTGATTTAACTCTTGCTCTCGCTTATATTC
TCTAATTATACGCTCATCTTTCCGGCGGGAGTAACCGGAAGAGGGGTCCA
GGCTCACGAGGGCCAAAATCAGGGCGAATAGTAGGGAGTGAAAGGTTTTC
ATGTCGACTGATAACT

BS14876.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5413-PA 636 CREG-RA 1..636 652..17 3180 100 Minus
CG5413-PB 636 CREG-RB 1..636 652..17 3180 100 Minus
CG5413-PC 522 CREG-RC 1..444 652..209 2220 100 Minus
CG5413-PC 522 CREG-RC 442..522 129..49 405 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
CREG-RD 962 CG5413-RD 107..743 653..17 3185 100 Minus
CREG-RB 967 CG5413-RB 112..748 653..17 3185 100 Minus
CREG-RA 899 CG5413-RA 50..686 653..17 3185 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:28:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17393816..17394260 209..653 2225 100 Plus
3R 32079331 3R 17393491..17393602 17..128 560 100 Plus
3R 32079331 3R 17393673..17393758 127..212 430 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:28:26 has no hits.

BS14876.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:25 Download gff for BS14876.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5413-PB 1..636 17..652 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:29:50 Download gff for BS14876.3prime
Subject Subject Range Query Range Percent Splice Strand
CREG-RA 38..686 17..664 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:47 Download gff for BS14876.3prime
Subject Subject Range Query Range Percent Splice Strand
CREG-RA 38..686 17..664 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:47 Download gff for BS14876.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17393491..17393600 17..126 100 <- Plus
3R 17393673..17393754 127..208 100 <- Plus
3R 17393816..17394272 209..664 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:29:50 Download gff for BS14876.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13219213..13219322 17..126 100 <- Plus
arm_3R 13219395..13219476 127..208 100 <- Plus
arm_3R 13219538..13219994 209..664 98   Plus

BS14876.5prime Sequence

666 bp (666 high quality bases) assembled on 2006-10-13

> BS14876.5prime
GAAGTTATCAGTCGACATGAAAACCTTTCACTCCCTACTATTCGCCCTGA
TTTTGGCCCTCGTGAGCCTGGACCCCTCTTCCGGTTACTCCCGCCGGAAA
GATGAGCGTATAATTAGAGAATATAAGCGAGAGCAAGAGTTAAATCACGC
CAAGATCGCCAGAGATTTGGTCCATCGCGCCAATTGGGCGGCTGTGGGAA
GTCTCTCCACCAACGAACGGGTGAAGGGGTATCCCATGGTCAACATTATC
TCCATCGACGACAGCGATGCTAATAACAGGTCCACTGGACGTATTCGATT
CCTGCTAACCGATTTGGACTTCACTGGTCCCGACTGGCAGAAGGACAACA
AGGTCACACTCCTGTTCAGTGACGAGCAGACCCTAAGATGCAAGGAGGGC
GGAAAGGATCCCATGGAGCCTACATGTGCCCGTTCCATGATCAGTGGACA
GGTGAAGAAGATGGATCCTAGCGACAAAAGCTATCAGCCATCGCTGGATG
CCTATGTGAGGCGTCATCCAGCTGCCATCAATTGGGTAAAAGCTCACAAT
TTCTACCTTTGCGAACTGGAAATTAGCAATATCTTTGTTCTGGACTTCTA
TGGAGGTCCTCATAAAGTGAGCGCCTCTGACTATTACGCTGTTTCGAATT
GAAAGCTTTCTAGACC

BS14876.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5413-PA 636 CREG-RA 1..636 17..652 3180 100 Plus
CG5413-PB 636 CREG-RB 1..636 17..652 3180 100 Plus
CG5413-PC 522 CREG-RC 1..444 17..460 2220 100 Plus
CG5413-PC 522 CREG-RC 442..522 540..620 405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:55:42
Subject Length Description Subject Range Query Range Score Percent Strand
CREG-RD 962 CG5413-RD 107..743 16..652 3185 100 Plus
CREG-RB 967 CG5413-RB 112..748 16..652 3185 100 Plus
CREG-RA 899 CG5413-RA 50..686 16..652 3185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17393816..17394260 460..16 2225 100 Minus
3R 32079331 3R 17393491..17393602 652..541 560 100 Minus
3R 32079331 3R 17393673..17393758 542..457 430 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:55:40 has no hits.

BS14876.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:26 Download gff for BS14876.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5413-PB 1..636 17..652 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:45:10 Download gff for BS14876.5prime
Subject Subject Range Query Range Percent Splice Strand
CREG-RA 38..686 5..652 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:51:23 Download gff for BS14876.5prime
Subject Subject Range Query Range Percent Splice Strand
CREG-RA 38..686 5..652 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:51:23 Download gff for BS14876.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17393491..17393600 543..652 100 <- Minus
3R 17393673..17393754 461..542 100 <- Minus
3R 17393816..17394272 5..460 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:10 Download gff for BS14876.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13219213..13219322 543..652 100 <- Minus
arm_3R 13219395..13219476 461..542 100 <- Minus
arm_3R 13219538..13219994 5..460 98   Minus

BS14876.complete Sequence

668 bp assembled on 2006-11-01

GenBank Submission: FJ637817

> BS14876.complete
GAAGTTATCAGTCGACATGAAAACCTTTCACTCCCTACTATTCGCCCTGA
TTTTGGCCCTCGTGAGCCTGGACCCCTCTTCCGGTTACTCCCGCCGGAAA
GATGAGCGTATAATTAGAGAATATAAGCGAGAGCAAGAGTTAAATCACGC
CAAGATCGCCAGAGATTTGGTCCATCGCGCCAATTGGGCGGCTGTGGGAA
GTCTCTCCACCAACGAACGGGTGAAGGGGTATCCCATGGTCAACATTATC
TCCATCGACGACAGCGATGCTAATAACAGGTCCACTGGACGTATTCGATT
CCTGCTAACCGATTTGGACTTCACTGGTCCCGACTGGCAGAAGGACAACA
AGGTCACACTCCTGTTCAGTGACGAGCAGACCCTAAGATGCAAGGAGGGC
GGAAAGGATCCCATGGAGCCTACATGTGCCCGTTCCATGATCAGTGGACA
GGTGAAGAAGATGGATCCTAGCGACAAAAGCTATCAGCCATCGCTGGATG
CCTATGTGAGGCGTCATCCAGCTGCCATCAATTGGGTAAAAGCTCACAAT
TTCTACCTTTGCGAACTGGAAATTAGCAATATCTTTGTTCTGGACTTCTA
TGGAGGTCCTCATAAAGTGAGCGCCTCTGACTATTACGCTGTTTCGAATT
GAAAGCTTTCTAGACCAT

BS14876.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:58:05
Subject Length Description Subject Range Query Range Score Percent Strand
CREG-RD 636 CG5413-PD 1..636 17..652 3180 100 Plus
CREG-RB 636 CG5413-PB 1..636 17..652 3180 100 Plus
CREG-RA 636 CG5413-PA 1..636 17..652 3180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:58:06
Subject Length Description Subject Range Query Range Score Percent Strand
CREG-RD 962 CG5413-RD 107..743 16..652 3185 100 Plus
CREG-RB 967 CG5413-RB 112..748 16..652 3185 100 Plus
CREG-RA 899 CG5413-RA 50..686 16..652 3185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:58:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17393816..17394260 460..16 2225 100 Minus
3R 32079331 3R 17393491..17393602 652..541 560 100 Minus
3R 32079331 3R 17393673..17393758 542..457 430 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:58:04 has no hits.

BS14876.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:35 Download gff for BS14876.complete
Subject Subject Range Query Range Percent Splice Strand
CREG-RB 1..636 17..652 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:19 Download gff for BS14876.complete
Subject Subject Range Query Range Percent Splice Strand
CREG-RB 46..691 9..652 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:40 Download gff for BS14876.complete
Subject Subject Range Query Range Percent Splice Strand
CREG-RA 51..685 17..651 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:35 Download gff for BS14876.complete
Subject Subject Range Query Range Percent Splice Strand
CREG-RB 46..691 9..652 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:59 Download gff for BS14876.complete
Subject Subject Range Query Range Percent Splice Strand
CREG-RA 51..685 17..651 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:59 Download gff for BS14876.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17393492..17393600 543..651 100 <- Minus
3R 17393673..17393754 461..542 100 <- Minus
3R 17393816..17394259 17..460 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:40 Download gff for BS14876.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13219214..13219322 543..651 100 <- Minus
arm_3R 13219395..13219476 461..542 100 <- Minus
arm_3R 13219538..13219981 17..460 100   Minus

BS14876.pep Sequence

Translation from 16 to 651

> BS14876.pep
MKTFHSLLFALILALVSLDPSSGYSRRKDERIIREYKREQELNHAKIARD
LVHRANWAAVGSLSTNERVKGYPMVNIISIDDSDANNRSTGRIRFLLTDL
DFTGPDWQKDNKVTLLFSDEQTLRCKEGGKDPMEPTCARSMISGQVKKMD
PSDKSYQPSLDAYVRRHPAAINWVKAHNFYLCELEISNIFVLDFYGGPHK
VSASDYYAVSN*

BS14876.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
CREG-PD 211 CG5413-PD 1..211 1..211 1107 100 Plus
CREG-PB 211 CG5413-PB 1..211 1..211 1107 100 Plus
CREG-PA 211 CG5413-PA 1..211 1..211 1107 100 Plus
CREG-PC 173 CG5413-PC 1..149 1..149 766 99.3 Plus