Clone Sequence Records
BS14877.3prime Sequence
639 bp (639 high quality bases) assembled on 2006-10-13
> BS14877.3prime
ATGGTCTAGAAAGCTTTCAGCTCAGCATCGATTTGCTAAAGATTTGGTAG
TCGGCTTGTTCCAGGACATCTGGCGAGATCTCGTCCTTCACGTAGCCCAG
TTGCTTGAAGAAGGAAATGGAGGCTTCGTTGTTGTTGAGAACGGTCAGCA
TGACCTTTTCCAGATGCCACAGGCGAGCGCAGTCCTCCAAAGTGCTCATG
ATGAACTTTCCCAGGCCTTTTCTACGATACTCTGCAGCCACTTGCATTTC
GTAACAATACAGGACACAGTCCCCGTGATCCATGTCGAAGCGGAACATTG
CGTAGGCCACGTTCTCCTTCTTTTCGTTCTGGGCCACCAAGTAGCGAGCC
CAGTTCTTGTTCAGCTCGGCGGCTTTGATCTTGGGCTGCCAGCCCATCTT
GAGTTGCTTGTAATAGGGTCCCACGTTCGTCTCGGCCAGCTTAAAGGCCC
ATTTCAGCAGTTTGGAGTCCGCATCCGACTTCGCTCGGCAGATGAGTTTG
AATTCCTCTCCGCTGGGGGCTTTGTAGCTTTGGTAGCTCAGAGATTCGAG
GGGATTCTTGGCCCTGGCAGCCGTCTCCACAAATCTCTGTTTGGCGCCCT
GACTTAGATCGTCCTGATTCCGCATGTCGACTGATAACT
BS14877.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7593-PA | 609 | CG7593-RA | 1..609 | 625..17 | 2995 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:52:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7593-RA | 736 | CG7593-RA | 85..693 | 625..17 | 3015 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:52:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29724496..29724866 | 255..625 | 1855 | 100 | Plus |
| 3R | 32079331 | 3R | 29724202..29724440 | 17..255 | 1165 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:52:43 has no hits.
BS14877.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:26 Download gff for
BS14877.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7593-PA | 1..609 | 17..625 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:45 Download gff for
BS14877.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7593-RA | 79..693 | 17..633 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:14 Download gff for
BS14877.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7593-RA | 79..693 | 17..633 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:14 Download gff for
BS14877.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29724202..29724439 | 17..254 | 99 | <- | Plus |
| 3R | 29724496..29724872 | 255..631 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:45 Download gff for
BS14877.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25549924..25550161 | 17..254 | 99 | <- | Plus |
| arm_3R | 25550218..25550594 | 255..631 | 98 | <- | Plus |
BS14877.5prime Sequence
639 bp (639 high quality bases) assembled on 2006-10-13
> BS14877.5prime
GAAGTTATCAGTCGACATGCGGAATCAGGACGATCTAAGTCAGGGCGCCA
AACAGAGATTTGTGGAGACGGCTGCCAGGGCCAAGAATCCCCTCGAATCT
CTGAGCTACCAAAGCTACAAAGCCCCCAGCGGAGAGGAATTCAAACTCAT
CTGCCGAGCGAAGTCGGATGCGGACTCCAAACTGCTGAAATGGGCCTTTA
AGCTGGCCGAGACGAACGTGGGACCCTATTACAAGCAACTCAAGATGGGC
TGGCAGCCCAAGATCAAAGCCGCCGAGCTGAACAAGAACTGGGCTCGCTA
CTTGGTGGCCCAGAACGAAAAGAAGGAGAACGTGGCCTACGCAATGTTCC
GCTTCGACATGGATCACGGGGACTGTGTCCTGTATTGTTACGAAATGCAA
GTGGCTGCAGAGTATCGTAGAAAAGGCCTGGGAAAGTTCATCATGAGCAC
TTTGGAGGACTGCGCTCGCCTGTGGCATCTGGAAAAGGTCATGCTGACCG
TTCTCAACAACAACGAAGCCTCCATTTCCTTCTTCAAGCAACTGGGCTAC
GTGAAGGACGAGATCTCGCCAGATGTCCTGGAACAAGCCGACTACCAAAT
CTTTAGCAAATCGATGCTGAGCTGAAAGCTTTCTAGACC
BS14877.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7593-PA | 609 | CG7593-RA | 1..609 | 17..625 | 2995 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:29:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7593-RA | 736 | CG7593-RA | 85..693 | 17..625 | 3015 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:29:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29724496..29724866 | 387..17 | 1855 | 100 | Minus |
| 3R | 32079331 | 3R | 29724202..29724440 | 625..387 | 1165 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:29:07 has no hits.
BS14877.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:26 Download gff for
BS14877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7593-PA | 1..609 | 17..625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:29:59 Download gff for
BS14877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7593-RA | 79..693 | 9..625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:40 Download gff for
BS14877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7593-RA | 79..693 | 9..625 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:40 Download gff for
BS14877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29724202..29724439 | 388..625 | 99 | <- | Minus |
| 3R | 29724496..29724872 | 11..387 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:29:59 Download gff for
BS14877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25549924..25550161 | 388..625 | 99 | <- | Minus |
| arm_3R | 25550218..25550594 | 11..387 | 98 | <- | Minus |
BS14877.complete Sequence
641 bp assembled on 2006-11-01
GenBank Submission: FJ637818
> BS14877.complete
GAAGTTATCAGTCGACATGCGGAATCAGGACGATCTAAGTCAGGGCGCCA
AACAGAGATTTGTGGAGACGGCTGCCAGGGCCAAGAATCCCCTCGAATCT
CTGAGCTACCAAAGCTACAAAGCCCCCAGCGGAGAGGAATTCAAACTCAT
CTGCCGAGCGAAGTCGGATGCGGACTCCAAACTGCTGAAATGGGCCTTTA
AGCTGGCCGAGACGAACGTGGGACCCTATTACAAGCAACTCAAGATGGGC
TGGCAGCCCAAGATCAAAGCCGCCGAGCTGAACAAGAACTGGGCTCGCTA
CTTGGTGGCCCAGAACGAAAAGAAGGAGAACGTGGCCTACGCAATGTTCC
GCTTCGACATGGATCACGGGGACTGTGTCCTGTATTGTTACGAAATGCAA
GTGGCTGCAGAGTATCGTAGAAAAGGCCTGGGAAAGTTCATCATGAGCAC
TTTGGAGGACTGCGCTCGCCTGTGGCATCTGGAAAAGGTCATGCTGACCG
TTCTCAACAACAACGAAGCCTCCATTTCCTTCTTCAAGCAACTGGGCTAC
GTGAAGGACGAGATCTCGCCAGATGTCCTGGAACAAGCCGACTACCAAAT
CTTTAGCAAATCGATGCTGAGCTGAAAGCTTTCTAGACCAT
BS14877.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:39:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7593-RA | 609 | CG7593-PA | 1..609 | 17..625 | 3015 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:39:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7593-RA | 736 | CG7593-RA | 85..693 | 17..625 | 3015 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:39:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29724496..29724866 | 387..17 | 1855 | 100 | Minus |
| 3R | 32079331 | 3R | 29724202..29724440 | 625..387 | 1165 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:39:20 has no hits.
BS14877.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:36 Download gff for
BS14877.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7593-RA | 1..609 | 17..625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:21 Download gff for
BS14877.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7593-RA | 49..663 | 9..625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:42 Download gff for
BS14877.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7593-RA | 85..692 | 17..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:36 Download gff for
BS14877.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7593-RA | 49..663 | 9..625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:06 Download gff for
BS14877.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7593-RA | 85..692 | 17..624 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:06 Download gff for
BS14877.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29724203..29724439 | 388..624 | 99 | <- | Minus |
| 3R | 29724496..29724866 | 17..387 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:42 Download gff for
BS14877.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25549925..25550161 | 388..624 | 99 | <- | Minus |
| arm_3R | 25550218..25550588 | 17..387 | 100 | | Minus |
BS14877.pep Sequence
Translation from 16 to 624
> BS14877.pep
MRNQDDLSQGAKQRFVETAARAKNPLESLSYQSYKAPSGEEFKLICRAKS
DADSKLLKWAFKLAETNVGPYYKQLKMGWQPKIKAAELNKNWARYLVAQN
EKKENVAYAMFRFDMDHGDCVLYCYEMQVAAEYRRKGLGKFIMSTLEDCA
RLWHLEKVMLTVLNNNEASISFFKQLGYVKDEISPDVLEQADYQIFSKSM
LS*
BS14877.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7593-PA | 202 | CG7593-PA | 1..202 | 1..202 | 1056 | 100 | Plus |
