Clone Sequence Records
BS14880.3prime Sequence
860 bp (767 high quality bases) assembled on 2006-10-13
> BS14880.3prime
ATGGTCTAGAAAGCTTTTATTTGTCATTCTCAGTAGAGTCCTTATTCTCA
TCGTCATTAGACTTGGACTCTTCTGAAGATTCAGCTTGCTCCTTATCGTT
GCCATTGGCGACCTCTGAAGTCTCCGACTTGGAATCTCCTTCGCCGGAAG
ATTTTTTATCGCTAGGATTGGCCAGCTCGGCCAGGTTGAACTTTTTGCAC
TCCAGATAGTTGTCGATCACGCTAAGCAGACACCAGCCCCTCAAGACCTC
CACGATGATGGATTTCTTGGCCTCCTTTAGGTCCACCTTGTTACCCACGT
TCTTGGAGTTGACCAGCTCGGCCAGTTGGGTTATGATTTGGTCGCGCTTG
ATCTGCTGATTATAGCGATGATTGAAGATGATGCCATAGCTGGTGGGCTC
CTTGAGGAAGTGCTTGTCGAAGAGCTCGCCGGCGGCAGTGATGATGTCCG
GCATGTTGGCGCGGCAGACGACTTCGATGGGCACCAGGCGCAGGACAAAT
CGGGACATGGACTTGCCGGTGGTCGCTATGTCGTTGATGATGTGTTTACC
CAGGGCGACCGGATCCTCCAGTTGGGTGCGGATGAACACGCAGTTGGTGG
TGTTGGTGTCTACATTCTGGAATCGCATCTTGCGCTGCGAAAGCATCTCG
CGGCATTTGGCGGCAGCTGCTTCCAAGTCGTCATCGTCATCACTGGTGCC
TCCCGCCGCTGGCTTCGGATCATCCTCTCCCGCATCACCACCCGCTCCTT
CCTCTGGCTGCTTCTTTTCCGGTTCATTCTCTGGCTTTTCCGAACCGTAA
AGTATGTCAGCATAGTGGTTCAACAAATTGTAGCATTCGCGAACACATGC
CTTCTCGTTG
BS14880.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15014-PA | 975 | CG15014-RA | 132..975 | 860..17 | 4220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:07:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15014-RA | 1155 | CG15014-RA | 194..1038 | 860..16 | 4225 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:07:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4321222..4322066 | 16..860 | 4225 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:07:18 has no hits.
BS14880.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:28 Download gff for
BS14880.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15014-PA | 132..975 | 17..860 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:54:16 Download gff for
BS14880.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15014-RA | 194..1038 | 16..860 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:33 Download gff for
BS14880.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15014-RA | 194..1038 | 16..860 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:33 Download gff for
BS14880.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4321222..4322066 | 16..860 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:54:16 Download gff for
BS14880.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4321222..4322066 | 16..860 | 100 | | Plus |
BS14880.5prime Sequence
870 bp (809 high quality bases) assembled on 2006-10-13
> BS14880.5prime
GAAGTTATCAGTCGACATGGAGCCCGCCTCAAAAAAATCGAAAATGGGTA
AAAACGTGAAGTTTAACAACAACAAGAAGAAGTATTTCCACGCCAAGAGG
CAGACGCTCCAACCTGGGCAACGTGGATTCTTCGCCACGTGCAACATCAA
CGAGAAGGCATGTGTTCGCGAATGCTACAATTTGTTGAACCACTATGCTG
ACATACTTTACGGTTCGGAAAAGCCAGAGAATGAACCGGAAAAGAAGCAG
CCAGAGGAAGGAGCGGGTGGTGATGCGGGAGAGGATGATCCGAAGCCAGC
GGCGGGAGGCACCAGTGATGACGATGACGACTTGGAAGCAGCTGCCGCCA
AATGCCGCGAGATGCTTTCGCAGCGCAAGATGCGATTCCAGAATGTAGAC
ACCAACACCACCAACTGCGTGTTCATCCGCACCCAACTGGAGGATCCGGT
CGCCCTGGGTAAACACATCATCAACGACATAGCGACCACCGGCAAGTCCA
TGTCCCGATTTGTCCTGCGCCTGGTGCCCATCGAAGTCGTCTGCCGCGCC
AACATGCCGGACATCATCACTGCCGCCGGCGAGCTCTTCGACAAGCACTT
CCTCAAGGAGCCCACCAGCTATGGCATCATCTTCAATCATCGCTATAATC
AGCAGATCAAGCGCGACCAAATCATAACCCAACTGGCCGAGCTGGTCAAC
TCCAAGAACGTGGGTAACAAGGTGGACCTAAAGGAGGCCAAGAAATCCAT
CATCGTGGAGGTCTTGAGGGGCTGGTGTCTGCTTAGCGTGATCGACAACT
ATCTGGAGTGCAAAAAGTTCAACCTGGCCGAGCTGGCCAATCCTAGCGAT
AAAAAATCTTCCGGCGAAAG
BS14880.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15014-PA | 975 | CG15014-RA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:55:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15014-RA | 1155 | CG15014-RA | 62..914 | 16..868 | 4265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:55:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4321346..4322198 | 868..16 | 4265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:55:46 has no hits.
BS14880.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:28 Download gff for
BS14880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15014-PA | 1..853 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:45:11 Download gff for
BS14880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15014-RA | 62..915 | 16..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:51:56 Download gff for
BS14880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15014-RA | 62..915 | 16..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:51:56 Download gff for
BS14880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4321344..4322198 | 16..870 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:11 Download gff for
BS14880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4321344..4322198 | 16..870 | 99 | | Minus |
BS14880.complete Sequence
1007 bp assembled on 2006-11-01
GenBank Submission: FJ637819
> BS14880.complete
GAAGTTATCAGTCGACATGGAGCCCGCCTCAAAAAAATCGAAAATGGGTA
AAAACGTGAAGTTTAACAACAACAAGAAGAAGTATTTCCACGCCAAGAGG
CAGACGCTCCAACCTGGGCAACGTGGATTCTTCGCCACGTGCAACATCAA
CGAGAAGGCATGTGTTCGCGAATGCTACAATTTGTTGAACCACTATGCTG
ACATACTTTACGGTTCGGAAAAGCCAGAGAATGAACCGGAAAAGAAGCAG
CCAGAGGAAGGAGCGGGTGGTGATGCGGGAGAGGATGATCCGAAGCCAGC
GGCGGGAGGCACCAGTGATGACGATGACGACTTGGAAGCAGCTGCCGCCA
AATGCCGCGAGATGCTTTCGCAGCGCAAGATGCGATTCCAGAATGTAGAC
ACCAACACCACCAACTGCGTGTTCATCCGCACCCAACTGGAGGATCCGGT
CGCCCTGGGTAAACACATCATCAACGACATAGCGACCACCGGCAAGTCCA
TGTCCCGATTTGTCCTGCGCCTGGTGCCCATCGAAGTCGTCTGCCGCGCC
AACATGCCGGACATCATCACTGCCGCCGGCGAGCTCTTCGACAAGCACTT
CCTCAAGGAGCCCACCAGCTATGGCATCATCTTCAATCATCGCTATAATC
AGCAGATCAAGCGCGACCAAATCATAACCCAACTGGCCGAGCTGGTCAAC
TCCAAGAACGTGGGTAACAAGGTGGACCTAAAGGAGGCCAAGAAATCCAT
CATCGTGGAGGTCTTGAGGGGCTGGTGTCTGCTTAGCGTGATCGACAACT
ATCTGGAGTGCAAAAAGTTCAACCTGGCCGAGCTGGCCAATCCTAGCGAT
AAAAAATCTTCCGGCGAAGGAGATTCCAAGTCGGAGACTTCAGAGGTCGC
CAATGGCAACGATAAGGAGCAAGCTGAATCTTCAGAAGAGTCCAAGTCTA
ATGACGATGAGAATAAGGACTCTACTGAGAATGACAAATAAAAGCTTTCT
AGACCAT
BS14880.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:41:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15014-RA | 975 | CG15014-PA | 1..975 | 17..991 | 4875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:41:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15014-RA | 1155 | CG15014-RA | 62..1038 | 16..992 | 4885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:41:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4321222..4322198 | 992..16 | 4885 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:41:54 has no hits.
BS14880.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:37 Download gff for
BS14880.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15014-RA | 1..975 | 17..991 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:22 Download gff for
BS14880.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15014-RA | 33..1009 | 16..992 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:20:20 Download gff for
BS14880.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15014-RA | 63..1029 | 17..983 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:38 Download gff for
BS14880.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15014-RA | 33..1009 | 16..992 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:30 Download gff for
BS14880.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15014-RA | 63..1029 | 17..983 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:30 Download gff for
BS14880.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4321231..4322197 | 17..983 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:20:20 Download gff for
BS14880.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4321231..4322197 | 17..983 | 100 | | Minus |
BS14880.pep Sequence
Translation from 16 to 990
> BS14880.pep
MEPASKKSKMGKNVKFNNNKKKYFHAKRQTLQPGQRGFFATCNINEKACV
RECYNLLNHYADILYGSEKPENEPEKKQPEEGAGGDAGEDDPKPAAGGTS
DDDDDLEAAAAKCREMLSQRKMRFQNVDTNTTNCVFIRTQLEDPVALGKH
IINDIATTGKSMSRFVLRLVPIEVVCRANMPDIITAAGELFDKHFLKEPT
SYGIIFNHRYNQQIKRDQIITQLAELVNSKNVGNKVDLKEAKKSIIVEVL
RGWCLLSVIDNYLECKKFNLAELANPSDKKSSGEGDSKSETSEVANGNDK
EQAESSEESKSNDDENKDSTENDK*
BS14880.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15014-PA | 324 | CG15014-PA | 1..324 | 1..324 | 1692 | 100 | Plus |
