Clone Sequence Records
BS14881.3prime Sequence
675 bp (675 high quality bases) assembled on 2006-10-13
> BS14881.3prime
ATGGTCTAGAAAGCTTTTAGTTGTTCAGGGGGTGGAGAGCTGGAGCGTTG
GACGCTGCAATTTCGGCGGCAGTGAGAGAATCATCGTTTTTCCCACCCGT
CTGCGATAAATGCTTGACGAGGTCCACCCAATCCCAGCCACGTTCCCGGT
CTCCTTTGTGATCGGTTCTCTCCCACTGCCGGCGCTTTTGCGCCTTAGTC
AGGTGCTCCTTCTTGGGCTCCTTTTTCTTGGACTCCGCATCGGCATTGGG
ATCGGAGATCTTTAGAGCACCCACGCCATCATCCACTAACGCCACCGTGG
GTGCAGATTCGGGTTGCTCTGCGGTCAATTGCTCCAGGTTGTCCTTAAGG
CATTCGAACAGGGTATAGGTCATGCCACAGCCCAGCCATTGGTCCGCTTC
CGTACTCAGAGCCGTTTGGATCCCTTCCTTGACAGCTGGCAGTAGATTCC
TATTGTAAAACGCGTTCATGTTGATCGCTGGCGCCTCATCGGGGTAATTT
TCGCCCCACTTGAGCTCGACCAAGAACGACTTGTAGTTATCCTCTTCGCC
ATATTTGTACTGAAATGTGACGCTATCTATTTCCTTGAAGTTCGTGTCGC
CCTCGTATATTGACTGCAACGCCTCCCGTTCTTCCGTCTGCTGTTCCAGT
GGCGTGCTCATGTCGACTGATAACT
BS14881.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10343-PA | 645 | CG10343-RA | 1..645 | 661..17 | 3225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:28:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10343-RA | 843 | CG10343-RA | 81..727 | 661..15 | 3235 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:28:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18703910..18704338 | 443..15 | 2145 | 100 | Minus |
2L | 23513712 | 2L | 18703728..18703837 | 553..444 | 550 | 100 | Minus |
2L | 23513712 | 2L | 18703553..18703660 | 661..554 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:28:35 has no hits.
BS14881.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:29 Download gff for
BS14881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10343-PA | 1..645 | 17..661 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:26:02 Download gff for
BS14881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10343-RA | 72..727 | 15..669 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:46 Download gff for
BS14881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10343-RA | 72..727 | 15..669 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:46 Download gff for
BS14881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18703544..18703660 | 554..669 | 96 | -> | Minus |
2L | 18703728..18703837 | 444..553 | 100 | -> | Minus |
2L | 18703910..18704338 | 15..443 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:26:02 Download gff for
BS14881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18703544..18703660 | 554..669 | 96 | -> | Minus |
arm_2L | 18703728..18703837 | 444..553 | 100 | -> | Minus |
arm_2L | 18703910..18704338 | 15..443 | 100 | | Minus |
BS14881.5prime Sequence
675 bp (675 high quality bases) assembled on 2006-10-13
> BS14881.5prime
GAAGTTATCAGTCGACATGAGCACGCCACTGGAACAGCAGACGGAAGAAC
GGGAGGCGTTGCAGTCAATATACGAGGGCGACACGAACTTCAAGGAAATA
GATAGCGTCACATTTCAGTACAAATATGGCGAAGAGGATAACTACAAGTC
GTTCTTGGTCGAGCTCAAGTGGGGCGAAAATTACCCCGATGAGGCGCCAG
CGATCAACATGAACGCGTTTTACAATAGGAATCTACTGCCAGCTGTCAAG
GAAGGGATCCAAACGGCTCTGAGTACGGAAGCGGACCAATGGCTGGGCTG
TGGCATGACCTATACCCTGTTCGAATGCCTTAAGGACAACCTGGAGCAAT
TGACCGCAGAGCAACCCGAATCTGCACCCACGGTGGCGTTAGTGGATGAT
GGCGTGGGTGCTCTAAAGATCTCCGATCCCAATGCCGATGCGGAGTCCAA
GAAAAAGGAGCCCAAGAAGGAGCACCTGACTAAGGCGCAAAAGCGCCGGC
AGTGGGAGAGAACCGATCACAAAGGAGACCGGGAACGTGGCTGGGATTGG
GTGGACCTCGTCAAGCATTTATCGCAGACGGGTGGGAAAAACGATGATTC
TCTCACTGCCGCCGAAATTGCAGCGTCCAACGCTCCAGCTCTCCACCCCC
TGAACAACTAAAAGCTTTCTAGACC
BS14881.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10343-PA | 645 | CG10343-RA | 1..645 | 17..661 | 3225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:52:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10343-RA | 843 | CG10343-RA | 81..727 | 17..663 | 3235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:52:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18703910..18704338 | 235..663 | 2145 | 100 | Plus |
2L | 23513712 | 2L | 18703728..18703837 | 125..234 | 550 | 100 | Plus |
2L | 23513712 | 2L | 18703553..18703660 | 17..124 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:52:52 has no hits.
BS14881.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:29 Download gff for
BS14881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10343-PA | 1..645 | 17..661 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:48 Download gff for
BS14881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10343-RA | 72..727 | 9..663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:16 Download gff for
BS14881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10343-RA | 72..727 | 9..663 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:16 Download gff for
BS14881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18703544..18703660 | 9..124 | 96 | -> | Plus |
2L | 18703728..18703837 | 125..234 | 100 | -> | Plus |
2L | 18703910..18704338 | 235..663 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:48 Download gff for
BS14881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18703910..18704338 | 235..663 | 100 | | Plus |
arm_2L | 18703544..18703660 | 9..124 | 96 | -> | Plus |
arm_2L | 18703728..18703837 | 125..234 | 100 | -> | Plus |
BS14881.complete Sequence
677 bp assembled on 2006-11-01
> BS14881.complete
GAAGTTATCAGTCGACATGAGCACGCCACTGGAACAGCAGACGGAAGAAC
GGGAGGCGTTGCAGTCAATATACGAGGGCGACACGAACTTCAAGGAAATA
GATAGCGTCACATTTCAGTACAAATATGGCGAAGAGGATAACTACAAGTC
GTTCTTGGTCGAGCTCAAGTGGGGCGAAAATTACCCCGATGAGGCGCCAG
CGATCAACATGAACGCGTTTTACAATAGGAATCTACTGCCAGCTGTCAAG
GAAGGGATCCAAACGGCTCTGAGTACGGAAGCGGACCAATGGCTGGGCTG
TGGCATGACCTATACCCTGTTCGAATGCCTTAAGGACAACCTGGAGCAAT
TGACCGCAGAGCAACCCGAATCTGCACCCACGGTGGCGTTAGTGGATGAT
GGCGTGGGTGCTCTAAAGATCTCCGATCCCAATGCCGATGCGGAGTCCAA
GAAAAAGGAGCCCAAGAAGGAGCACCTGACTAAGGCGCAAAAGCGCCGGC
AGTGGGAGAGAACCGATCACAAAGGAGACCGGGAACGTGGCTGGGATTGG
GTGGACCTCGTCAAGCATTTATCGCAGACGGGTGGGAAAAACGATGATTC
TCTCACTGCCGCCGAAATTGCAGCGTCCAACGCTCCAGCTCTCCACCCCC
TGAACAACTAAAAGCTTTCTAGACCAT
BS14881.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:06:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10343-RA | 645 | CG10343-PA | 1..645 | 17..661 | 3225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:06:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10343-RA | 843 | CG10343-RA | 81..727 | 17..663 | 3235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:06:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18703910..18704338 | 235..663 | 2145 | 100 | Plus |
2L | 23513712 | 2L | 18703728..18703837 | 125..234 | 550 | 100 | Plus |
2L | 23513712 | 2L | 18703553..18703660 | 17..124 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:06:55 has no hits.
BS14881.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:22 Download gff for
BS14881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10343-RA | 1..645 | 17..661 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:06 Download gff for
BS14881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10343-RA | 78..733 | 9..663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:48 Download gff for
BS14881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10343-RA | 81..723 | 17..659 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:22 Download gff for
BS14881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10343-RA | 78..733 | 9..663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:40 Download gff for
BS14881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10343-RA | 81..723 | 17..659 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:40 Download gff for
BS14881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18703553..18703660 | 17..124 | 100 | -> | Plus |
2L | 18703728..18703837 | 125..234 | 100 | -> | Plus |
2L | 18703910..18704334 | 235..659 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:48 Download gff for
BS14881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18703553..18703660 | 17..124 | 100 | -> | Plus |
arm_2L | 18703728..18703837 | 125..234 | 100 | -> | Plus |
arm_2L | 18703910..18704334 | 235..659 | 100 | | Plus |
BS14881.pep Sequence
Translation from 16 to 660
> BS14881.pep
MSTPLEQQTEEREALQSIYEGDTNFKEIDSVTFQYKYGEEDNYKSFLVEL
KWGENYPDEAPAINMNAFYNRNLLPAVKEGIQTALSTEADQWLGCGMTYT
LFECLKDNLEQLTAEQPESAPTVALVDDGVGALKISDPNADAESKKKEPK
KEHLTKAQKRRQWERTDHKGDRERGWDWVDLVKHLSQTGGKNDDSLTAAE
IAASNAPALHPLNN*
BS14881.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:00:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10343-PA | 214 | CG10343-PA | 1..214 | 1..214 | 1135 | 100 | Plus |