Clone BS14882 Report

Search the DGRC for BS14882

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:148
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptCG7339-RA
Protein status:BS14882.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14882.3prime Sequence

753 bp (753 high quality bases) assembled on 2006-10-13

> BS14882.3prime
ATGGTCTAGAAAGCTTTCATTCTTCGCATGCGCCTTCGCCATCTTCGTCA
TCGTACTCCTCGTCCTCCTCGTCGTCCTGCTCATCGTCCTTTCCCTGCTG
ATCCCACCAGGAGAGCACGCCTAGGCCGGATTCGTTAATGGCGCCAATAA
TCCTGTACGGTGTCTTCACTTCTTGGGAGGTAGCTGATGCGACTGCAGCG
GATGTGCTAGCTCCCTGCTGAGTCTGAGCCTCAGTTTTCGGTGGTCCAAT
GGGTGATGTTTCCTCGAAGATCTCCCGTGATACGCGGAACTTGATGGGCT
CGCCAACGTCCATGAAGAGATCGTGTTTGGCGCCGTCCTCGAGCGGATAT
TCCCAAACCCAGGCCTGTTCGGCCTCATCGAAGCGCGAAGGATGCTGCAG
GGCGGCATGCGGAATGAGGATGTCGTCGAAGAAACCAAGTGTCACATGGA
CTCCTTCGCGGCTGCAGTTTCGAATCTTTCCGGTAATCACGGTGCCCACC
ATCGGCCGGAAGACCACGTACCGGAACAGAACCTCCGTGTGCGAGGCTCC
GTCTCCCGGCAGGATGATGGAATCCTTCAGTGAAACAATATCCTTCAGCG
CAATGCATAATCCCACGTTAAGAAGGACCTTATTGGCCAGCTTTCGGTCG
ATCTCGTCGCGCACGGCGTCCACCAACTTCAGATGGAACTGGTCCGGCGC
AATCCTCACATTGTCCTTCAGCTCCGCCAGCACGAACATGTCGACTGATA
ACT

BS14882.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7339-PA 723 CG7339-RA 1..723 739..17 3515 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG7339-RB 1628 CG7339-RB 82..808 743..17 3575 99.4 Minus
CG7339-RA 967 CG7339-RA 82..808 743..17 3575 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:14:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11649007..11649492 630..145 2385 99.4 Minus
3L 28110227 3L 11649554..11649679 142..17 630 100 Minus
3L 28110227 3L 11648837..11648953 743..627 585 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:14:41 has no hits.

BS14882.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:29 Download gff for BS14882.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7339-PA 1..723 17..739 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:17:17 Download gff for BS14882.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7339-RA 76..812 12..749 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:46 Download gff for BS14882.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7339-RA 76..812 12..749 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:46 Download gff for BS14882.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11648831..11648951 629..749 97 -> Minus
3L 11649009..11649491 146..628 99 -> Minus
3L 11649551..11649683 12..145 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:17:17 Download gff for BS14882.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11641931..11642051 629..749 97 -> Minus
arm_3L 11642109..11642591 146..628 99 -> Minus
arm_3L 11642651..11642783 12..145 97   Minus

BS14882.5prime Sequence

753 bp (717 high quality bases) assembled on 2006-10-13

> BS14882.5prime
GAAGTTATCAGTCGACATGTTCGTGCTGGCGGAGCTGAAGGACAATGTGA
GGATTGCGCCGGACCAGTTCCATCTGAAGTTGGTGGACGCCGTGCGCGAC
GAGATCGACCGAAAGCTGGCCAATAAGGTCCTTCTTAACGTGGGATTATG
CATTGCGCTGAAGGATATTGTTTCACTGAAGGATTCCATCATCCTGCCGG
GAGACGGAGCCTCGCACACGGAGGTTCTGTTCCGGTACGTGGTCTTCCGG
CCGATGGTGGGCACCGTGATTACCGGAAAGATTCGAAACTGCAGCCGCGA
AGGAGTCCATGTGACACTTGGTTTCTTCGACGACATCCTCATTCCGCATG
CCGCCCTGCAGCATCCTTCGCGCTTCGATGAGGCCGAACAGGCCTGGGTT
TGGGAATATCCGCTCGAGGACGGCGCCAAACACGATCTCTTCATGGACGT
TGGCGAGCCCATCAAGTTCCGCGTATCACGGGAGATCTTCGAGGAAACAT
CACCCATTGGACCACCGAAAACTGAGGCTCAGACTCAGCAGGGAGCTAGC
ACATCCGCTGCAGTCGCATCAGCTACCTCCCAAGAAGTGAAGACACCGTA
CAGGATTATTGGCGCCATTAACGAATCCGGCCTAGGCGTGCTCTCCTGGT
GGGATCAGCAGGGAAAGGACGATGAGCAGGACGACGAGGAGGACGAGGAG
TACGATGACGAAGATGGCGAAGGCGCATGCGAAGAATGAAAGCTTTCTAG
ACC

BS14882.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG7339-PA 723 CG7339-RA 1..723 17..739 3515 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7339-RB 1628 CG7339-RB 82..808 13..739 3575 99.4 Plus
CG7339-RA 967 CG7339-RA 82..808 13..739 3575 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:04:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11649007..11649492 126..611 2385 99.4 Plus
3L 28110227 3L 11649554..11649679 614..739 630 100 Plus
3L 28110227 3L 11648837..11648953 13..129 585 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:04:26 has no hits.

BS14882.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:30 Download gff for BS14882.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7339-PA 1..723 17..739 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:36 Download gff for BS14882.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7339-RA 76..812 7..744 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:21 Download gff for BS14882.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7339-RA 76..812 7..744 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:21 Download gff for BS14882.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11648831..11648951 7..127 97 -> Plus
3L 11649009..11649491 128..610 99 -> Plus
3L 11649551..11649683 611..744 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:36 Download gff for BS14882.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11641931..11642051 7..127 97 -> Plus
arm_3L 11642109..11642591 128..610 99 -> Plus
arm_3L 11642651..11642783 611..744 97   Plus

BS14882.complete Sequence

755 bp assembled on 2006-11-01

GenBank Submission: FJ637820

> BS14882.complete
GAAGTTATCAGTCGACATGTTCGTGCTGGCGGAGCTGAAGGACAATGTGA
GGATTGCGCCGGACCAGTTCCATCTGAAGTTGGTGGACGCCGTGCGCGAC
GAGATCGACCGAAAGCTGGCCAATAAGGTCCTTCTTAACGTGGGATTATG
CATTGCGCTGAAGGATATTGTTTCACTGAAGGATTCCATCATCCTGCCGG
GAGACGGAGCCTCGCACACGGAGGTTCTGTTCCGGTACGTGGTCTTCCGG
CCGATGGTGGGCACCGTGATTACCGGAAAGATTCGAAACTGCAGCCGCGA
AGGAGTCCATGTGACACTTGGTTTCTTCGACGACATCCTCATTCCGCATG
CCGCCCTGCAGCATCCTTCGCGCTTCGATGAGGCCGAACAGGCCTGGGTT
TGGGAATATCCGCTCGAGGACGGCGCCAAACACGATCTCTTCATGGACGT
TGGCGAGCCCATCAAGTTCCGCGTATCACGGGAGATCTTCGAGGAAACAT
CACCCATTGGACCACCGAAAACTGAGGCTCAGACTCAGCAGGGAGCTAGC
ACATCCGCTGCAGTCGCATCAGCTACCTCCCAAGAAGTGAAGACACCGTA
CAGGATTATTGGCGCCATTAACGAATCCGGCCTAGGCGTGCTCTCCTGGT
GGGATCAGCAGGGAAAGGACGATGAGCAGGACGACGAGGAGGACGAGGAG
TACGATGACGAAGATGGCGAAGGCGCATGCGAAGAATGAAAGCTTTCTAG
ACCAT

BS14882.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7339-RB 723 CG7339-PB 1..723 17..739 3555 99.4 Plus
CG7339-RA 723 CG7339-PA 1..723 17..739 3555 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:54:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7339-RB 1628 CG7339-RB 82..808 13..739 3575 99.4 Plus
CG7339-RA 967 CG7339-RA 82..808 13..739 3575 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11649007..11649492 126..611 2385 99.4 Plus
3L 28110227 3L 11649554..11649679 614..739 630 100 Plus
3L 28110227 3L 11648837..11648953 13..129 585 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:54:33 has no hits.

BS14882.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:19 Download gff for BS14882.complete
Subject Subject Range Query Range Percent Splice Strand
CG7339-RA 1..723 17..739 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:38 Download gff for BS14882.complete
Subject Subject Range Query Range Percent Splice Strand
CG7339-RA 48..784 7..744 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:44 Download gff for BS14882.complete
Subject Subject Range Query Range Percent Splice Strand
CG7339-RA 91..807 22..738 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:20 Download gff for BS14882.complete
Subject Subject Range Query Range Percent Splice Strand
CG7339-RA 48..784 7..744 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:53 Download gff for BS14882.complete
Subject Subject Range Query Range Percent Splice Strand
CG7339-RA 91..807 22..738 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:53 Download gff for BS14882.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11648846..11648951 22..127 100 -> Plus
3L 11649009..11649491 128..610 99 -> Plus
3L 11649551..11649678 611..738 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:44 Download gff for BS14882.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11641946..11642051 22..127 100 -> Plus
arm_3L 11642109..11642591 128..610 99 -> Plus
arm_3L 11642651..11642778 611..738 99   Plus

BS14882.pep Sequence

Translation from 16 to 738

> BS14882.pep
MFVLAELKDNVRIAPDQFHLKLVDAVRDEIDRKLANKVLLNVGLCIALKD
IVSLKDSIILPGDGASHTEVLFRYVVFRPMVGTVITGKIRNCSREGVHVT
LGFFDDILIPHAALQHPSRFDEAEQAWVWEYPLEDGAKHDLFMDVGEPIK
FRVSREIFEETSPIGPPKTEAQTQQGASTSAAVASATSQEVKTPYRIIGA
INESGLGVLSWWDQQGKDDEQDDEEDEEYDDEDGEGACEE*

BS14882.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7339-PB 240 CG7339-PB 1..240 1..240 1252 100 Plus
CG7339-PA 240 CG7339-PA 1..240 1..240 1252 100 Plus