Clone Sequence Records
BS14882.3prime Sequence
753 bp (753 high quality bases) assembled on 2006-10-13
> BS14882.3prime
ATGGTCTAGAAAGCTTTCATTCTTCGCATGCGCCTTCGCCATCTTCGTCA
TCGTACTCCTCGTCCTCCTCGTCGTCCTGCTCATCGTCCTTTCCCTGCTG
ATCCCACCAGGAGAGCACGCCTAGGCCGGATTCGTTAATGGCGCCAATAA
TCCTGTACGGTGTCTTCACTTCTTGGGAGGTAGCTGATGCGACTGCAGCG
GATGTGCTAGCTCCCTGCTGAGTCTGAGCCTCAGTTTTCGGTGGTCCAAT
GGGTGATGTTTCCTCGAAGATCTCCCGTGATACGCGGAACTTGATGGGCT
CGCCAACGTCCATGAAGAGATCGTGTTTGGCGCCGTCCTCGAGCGGATAT
TCCCAAACCCAGGCCTGTTCGGCCTCATCGAAGCGCGAAGGATGCTGCAG
GGCGGCATGCGGAATGAGGATGTCGTCGAAGAAACCAAGTGTCACATGGA
CTCCTTCGCGGCTGCAGTTTCGAATCTTTCCGGTAATCACGGTGCCCACC
ATCGGCCGGAAGACCACGTACCGGAACAGAACCTCCGTGTGCGAGGCTCC
GTCTCCCGGCAGGATGATGGAATCCTTCAGTGAAACAATATCCTTCAGCG
CAATGCATAATCCCACGTTAAGAAGGACCTTATTGGCCAGCTTTCGGTCG
ATCTCGTCGCGCACGGCGTCCACCAACTTCAGATGGAACTGGTCCGGCGC
AATCCTCACATTGTCCTTCAGCTCCGCCAGCACGAACATGTCGACTGATA
ACT
BS14882.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7339-PA | 723 | CG7339-RA | 1..723 | 739..17 | 3515 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:14:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7339-RB | 1628 | CG7339-RB | 82..808 | 743..17 | 3575 | 99.4 | Minus |
CG7339-RA | 967 | CG7339-RA | 82..808 | 743..17 | 3575 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:14:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11649007..11649492 | 630..145 | 2385 | 99.4 | Minus |
3L | 28110227 | 3L | 11649554..11649679 | 142..17 | 630 | 100 | Minus |
3L | 28110227 | 3L | 11648837..11648953 | 743..627 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:14:41 has no hits.
BS14882.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:29 Download gff for
BS14882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7339-PA | 1..723 | 17..739 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:17:17 Download gff for
BS14882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7339-RA | 76..812 | 12..749 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:46 Download gff for
BS14882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7339-RA | 76..812 | 12..749 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:46 Download gff for
BS14882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11648831..11648951 | 629..749 | 97 | -> | Minus |
3L | 11649009..11649491 | 146..628 | 99 | -> | Minus |
3L | 11649551..11649683 | 12..145 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:17:17 Download gff for
BS14882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11641931..11642051 | 629..749 | 97 | -> | Minus |
arm_3L | 11642109..11642591 | 146..628 | 99 | -> | Minus |
arm_3L | 11642651..11642783 | 12..145 | 97 | | Minus |
BS14882.5prime Sequence
753 bp (717 high quality bases) assembled on 2006-10-13
> BS14882.5prime
GAAGTTATCAGTCGACATGTTCGTGCTGGCGGAGCTGAAGGACAATGTGA
GGATTGCGCCGGACCAGTTCCATCTGAAGTTGGTGGACGCCGTGCGCGAC
GAGATCGACCGAAAGCTGGCCAATAAGGTCCTTCTTAACGTGGGATTATG
CATTGCGCTGAAGGATATTGTTTCACTGAAGGATTCCATCATCCTGCCGG
GAGACGGAGCCTCGCACACGGAGGTTCTGTTCCGGTACGTGGTCTTCCGG
CCGATGGTGGGCACCGTGATTACCGGAAAGATTCGAAACTGCAGCCGCGA
AGGAGTCCATGTGACACTTGGTTTCTTCGACGACATCCTCATTCCGCATG
CCGCCCTGCAGCATCCTTCGCGCTTCGATGAGGCCGAACAGGCCTGGGTT
TGGGAATATCCGCTCGAGGACGGCGCCAAACACGATCTCTTCATGGACGT
TGGCGAGCCCATCAAGTTCCGCGTATCACGGGAGATCTTCGAGGAAACAT
CACCCATTGGACCACCGAAAACTGAGGCTCAGACTCAGCAGGGAGCTAGC
ACATCCGCTGCAGTCGCATCAGCTACCTCCCAAGAAGTGAAGACACCGTA
CAGGATTATTGGCGCCATTAACGAATCCGGCCTAGGCGTGCTCTCCTGGT
GGGATCAGCAGGGAAAGGACGATGAGCAGGACGACGAGGAGGACGAGGAG
TACGATGACGAAGATGGCGAAGGCGCATGCGAAGAATGAAAGCTTTCTAG
ACC
BS14882.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7339-PA | 723 | CG7339-RA | 1..723 | 17..739 | 3515 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:04:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7339-RB | 1628 | CG7339-RB | 82..808 | 13..739 | 3575 | 99.4 | Plus |
CG7339-RA | 967 | CG7339-RA | 82..808 | 13..739 | 3575 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:04:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11649007..11649492 | 126..611 | 2385 | 99.4 | Plus |
3L | 28110227 | 3L | 11649554..11649679 | 614..739 | 630 | 100 | Plus |
3L | 28110227 | 3L | 11648837..11648953 | 13..129 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:04:26 has no hits.
BS14882.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:30 Download gff for
BS14882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7339-PA | 1..723 | 17..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:36 Download gff for
BS14882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7339-RA | 76..812 | 7..744 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:21 Download gff for
BS14882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7339-RA | 76..812 | 7..744 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:21 Download gff for
BS14882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11648831..11648951 | 7..127 | 97 | -> | Plus |
3L | 11649009..11649491 | 128..610 | 99 | -> | Plus |
3L | 11649551..11649683 | 611..744 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:36 Download gff for
BS14882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11641931..11642051 | 7..127 | 97 | -> | Plus |
arm_3L | 11642109..11642591 | 128..610 | 99 | -> | Plus |
arm_3L | 11642651..11642783 | 611..744 | 97 | | Plus |
BS14882.complete Sequence
755 bp assembled on 2006-11-01
GenBank Submission: FJ637820
> BS14882.complete
GAAGTTATCAGTCGACATGTTCGTGCTGGCGGAGCTGAAGGACAATGTGA
GGATTGCGCCGGACCAGTTCCATCTGAAGTTGGTGGACGCCGTGCGCGAC
GAGATCGACCGAAAGCTGGCCAATAAGGTCCTTCTTAACGTGGGATTATG
CATTGCGCTGAAGGATATTGTTTCACTGAAGGATTCCATCATCCTGCCGG
GAGACGGAGCCTCGCACACGGAGGTTCTGTTCCGGTACGTGGTCTTCCGG
CCGATGGTGGGCACCGTGATTACCGGAAAGATTCGAAACTGCAGCCGCGA
AGGAGTCCATGTGACACTTGGTTTCTTCGACGACATCCTCATTCCGCATG
CCGCCCTGCAGCATCCTTCGCGCTTCGATGAGGCCGAACAGGCCTGGGTT
TGGGAATATCCGCTCGAGGACGGCGCCAAACACGATCTCTTCATGGACGT
TGGCGAGCCCATCAAGTTCCGCGTATCACGGGAGATCTTCGAGGAAACAT
CACCCATTGGACCACCGAAAACTGAGGCTCAGACTCAGCAGGGAGCTAGC
ACATCCGCTGCAGTCGCATCAGCTACCTCCCAAGAAGTGAAGACACCGTA
CAGGATTATTGGCGCCATTAACGAATCCGGCCTAGGCGTGCTCTCCTGGT
GGGATCAGCAGGGAAAGGACGATGAGCAGGACGACGAGGAGGACGAGGAG
TACGATGACGAAGATGGCGAAGGCGCATGCGAAGAATGAAAGCTTTCTAG
ACCAT
BS14882.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:54:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7339-RB | 723 | CG7339-PB | 1..723 | 17..739 | 3555 | 99.4 | Plus |
CG7339-RA | 723 | CG7339-PA | 1..723 | 17..739 | 3555 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:54:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7339-RB | 1628 | CG7339-RB | 82..808 | 13..739 | 3575 | 99.4 | Plus |
CG7339-RA | 967 | CG7339-RA | 82..808 | 13..739 | 3575 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:54:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11649007..11649492 | 126..611 | 2385 | 99.4 | Plus |
3L | 28110227 | 3L | 11649554..11649679 | 614..739 | 630 | 100 | Plus |
3L | 28110227 | 3L | 11648837..11648953 | 13..129 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:54:33 has no hits.
BS14882.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:19 Download gff for
BS14882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7339-RA | 1..723 | 17..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:38 Download gff for
BS14882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7339-RA | 48..784 | 7..744 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:44 Download gff for
BS14882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7339-RA | 91..807 | 22..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:20 Download gff for
BS14882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7339-RA | 48..784 | 7..744 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:53 Download gff for
BS14882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7339-RA | 91..807 | 22..738 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:53 Download gff for
BS14882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11648846..11648951 | 22..127 | 100 | -> | Plus |
3L | 11649009..11649491 | 128..610 | 99 | -> | Plus |
3L | 11649551..11649678 | 611..738 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:44 Download gff for
BS14882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11641946..11642051 | 22..127 | 100 | -> | Plus |
arm_3L | 11642109..11642591 | 128..610 | 99 | -> | Plus |
arm_3L | 11642651..11642778 | 611..738 | 99 | | Plus |
BS14882.pep Sequence
Translation from 16 to 738
> BS14882.pep
MFVLAELKDNVRIAPDQFHLKLVDAVRDEIDRKLANKVLLNVGLCIALKD
IVSLKDSIILPGDGASHTEVLFRYVVFRPMVGTVITGKIRNCSREGVHVT
LGFFDDILIPHAALQHPSRFDEAEQAWVWEYPLEDGAKHDLFMDVGEPIK
FRVSREIFEETSPIGPPKTEAQTQQGASTSAAVASATSQEVKTPYRIIGA
INESGLGVLSWWDQQGKDDEQDDEEDEEYDDEDGEGACEE*
BS14882.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7339-PB | 240 | CG7339-PB | 1..240 | 1..240 | 1252 | 100 | Plus |
CG7339-PA | 240 | CG7339-PA | 1..240 | 1..240 | 1252 | 100 | Plus |