Clone Sequence Records
BS14883.3prime Sequence
867 bp (765 high quality bases) assembled on 2006-10-13
> BS14883.3prime
ATGGTCTAGAAAGCTTTTACAGCTCCGTGGTGATCTCGTCCTGCGGTCGA
AAGCCCAGCTTGTAGAACTCGTCCTCCAGCCACAGCGAGCTGGCGTTGAG
ATCAGAGATGAGATTGCCGCTCTTCAGCGTGTTGAAACTGCTGCCGAAAG
GATCCGAAGCCCGCGGCTCCTCGAACTCGTGCAGGCTGATCAGCGAGCCA
AACAGGTGTAGCTTCTGCTGCGCCGAGGCACTGCTGCTCCGATCGCCGGC
CATCAGTTCGCCCACTCCCTGCGGCGTCGCCGTGGGCGTCACCTGTTGCC
GGAAGATGCTGGGCTGCTGCAGTTGCTTCTTCTTGTTCGGCGCAGCGTAG
AGCACCTCGTGGTGGCCAGCACTGTGACCGTGTGAGGCCTGAAAGAAGTC
GATAAGCTGGCCCACCTGCGGCTTGTAACGCTCCAGGGCCTGCTCCGACC
AGGCATACAGCCTGGACCAATCTGGCGGCGGGGCGGGAATCAGTTCAATG
GGCCTGTTTAGCAGAATCAGCAGCTTTGCCAGATCCCGGACGATGGGCCT
GTACGAGTTGGCAGCCGCCACTTCACCCGACAAATAGAGCTTCCTGATCT
GCCGCCGGGTATCGTTCAGCATGGCCAGAAAGTACTCCGCATTCGGACGC
ATCTCGTTTAGCTGCCTCATGAAGTCCGCCCGATCCATGGTGTTCTCGTT
GATGAGCTTCTGTTTGATGGACTTTCGCCGCCTCTTCCTCTTGACCAGCA
TCACGGCGACAGCCAGAAGGGACAGGCAAACGAGGAAGCCACCGAGAAGT
CCGGCCAGTGCGGCCATCAGTGGCCCAGAATAGCCGGTGGGTACACACAC
CCGACCCATGAACTCCG
BS14883.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5507-PA | 1260 | T48-RA | 410..1260 | 867..17 | 4230 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:43:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| T48-RB | 2449 | CG5507-RB | 1069..1919 | 867..17 | 4240 | 99.9 | Minus |
| T48-RA | 2443 | CG5507-RA | 1069..1919 | 867..17 | 4240 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:43:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26909617..26910467 | 867..17 | 4240 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-02 18:43:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 7752..7804 | 749..696 | 114 | 70.4 | Minus |
BS14883.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:30 Download gff for
BS14883.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5507-PA | 410..1260 | 17..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:46 Download gff for
BS14883.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| T48-RA | 1069..1923 | 13..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:17:17 Download gff for
BS14883.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| T48-RA | 1069..1923 | 13..867 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:17:17 Download gff for
BS14883.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26909617..26910471 | 13..867 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:46 Download gff for
BS14883.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22735339..22736193 | 13..867 | 99 | | Minus |
BS14883.5prime Sequence
872 bp (783 high quality bases) assembled on 2006-10-13
> BS14883.5prime
GAAGTTATCAGTCGACATGCGGTCGGTGGAAGTGGCCCAAAGCGGCCCAT
CTGCCATCTTCTGGCTCGTCCAAGTGCTAATCGTGGGGGCGGCACAGGCT
GCCACGCCCTTCGCGAAAGAGTACCGCAACGCGGGACTCTACAATGGCAA
CACACTCGTCGATCTGGACGGTTCCACCACCCTGGACATGGGCCAGGAGA
AGCCCACCAGCAGCAGCAGCGGTCTCAGTGGAGGCTTCAAGTCGGAGTCG
TCGGTGGTGCTGCCCGGCATGCTGCAAAATTCAGGCTGCCCGCTGACGAC
GAGTTCCCACTGCCTGCGCTGCAACAAGGTGGGCTGCATCAAGTGCCCAA
TGTACCTGGTGACGGACACGAGGCAGTGCGTGGATCAGTGCCCCGCCGGC
TACTTGGACCAGTGGTCCGCCCACACGGAGTTCATGGGTCGGGTGTGTGT
ACCCACCGGCTATTCTGGGCCACTGATGGCCGCACTGGCCGGACTTCTCG
GTGGCTTCCTCGTTTGCCTGTCCCTTCTGGCTGTCGCCGTGATGCTGGTC
AAGAGGAAGAGGCGGCGAAAGTCCATCAAACAGAAGCTCATCAACGAGAA
CACCATGGATCGGGCGGACTTCATGAGGCAGCTAAACGAGATGCGTCCGA
ATGCGGAGTACTTTCTGGCCATGCTGAACGATACCCGGCGGCAGATCAGG
AAGCTCTATTTGTCGGGTGAAGTGGCGGCTGCCAACTCGTACAGGCCCAT
CGTCCGGGATCTGGCAAAGCTGCTGATTCTGCTAAACGGCCCATTGAACT
GATTCCCGCCCCGCCCGCAGATTGGTCCAGGCTGTATGCCTGGTCGGAAC
AGGCCCTGGAGCGTTACAAGCC
BS14883.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5507-PA | 1260 | T48-RA | 1..771 | 17..787 | 3855 | 100 | Plus |
| CG5507-PA | 1260 | T48-RA | 773..857 | 788..872 | 325 | 95.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:23:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| T48-RB | 2449 | CG5507-RB | 660..1516 | 17..872 | 4200 | 99.4 | Plus |
| T48-RA | 2443 | CG5507-RA | 660..1516 | 17..872 | 4200 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:23:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26909473..26910064 | 282..872 | 2850 | 99.2 | Plus |
| 3R | 32079331 | 3R | 26883956..26884224 | 17..285 | 1345 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 11:23:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 7752..7804 | 544..597 | 114 | 70.4 | Plus |
BS14883.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:31 Download gff for
BS14883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5507-PA | 1..857 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:26 Download gff for
BS14883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| T48-RA | 654..1516 | 10..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:31:52 Download gff for
BS14883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| T48-RA | 654..1516 | 10..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:31:52 Download gff for
BS14883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26883950..26884223 | 10..284 | 99 | -> | Plus |
| 3R | 26909476..26910064 | 285..872 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:26 Download gff for
BS14883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22709672..22709945 | 10..284 | 99 | -> | Plus |
| arm_3R | 22735198..22735786 | 285..872 | 99 | | Plus |
BS14883.complete Sequence
1292 bp assembled on 2006-11-01
GenBank Submission: FJ637821
> BS14883.complete
GAAGTTATCAGTCGACATGCGGTCGGTGGAAGTGGCCCAAAGCGGCCCAT
CTGCCATCTTCTGGCTCGTCCAAGTGCTAATCGTGGGGGCGGCACAGGCT
GCCACGCCCTTCGCGAAAGAGTACCGCAACGCGGGACTCTACAATGGCAA
CACACTCGTCGATCTGGACGGTTCCACCACCCTGGACATGGGCCAGGAGA
AGCCCACCAGCAGCAGCAGCGGTCTCAGTGGAGGCTTCAAGTCGGAGTCG
TCGGTGGTGCTGCCCGGCATGCTGCAAAATTCAGGCTGCCCGCTGACGAC
GAGTTCCCACTGCCTGCGCTGCAACAAGGTGGGCTGCATCAAGTGCCCAA
TGTACCTGGTGACGGACACGAGGCAGTGCGTGGATCAGTGCCCCGCCGGC
TACTTGGACCAGTGGTCCGCCCACACGGAGTTCATGGGTCGGGTGTGTGT
ACCCACCGGCTATTCTGGGCCACTGATGGCCGCACTGGCCGGACTTCTCG
GTGGCTTCCTCGTTTGCCTGTCCCTTCTGGCTGTCGCCGTGATGCTGGTC
AAGAGGAAGAGGCGGCGAAAGTCCATCAAACAGAAGCTCATCAACGAGAA
CACCATGGATCGGGCGGACTTCATGAGGCAGCTAAACGAGATGCGTCCGA
ATGCGGAGTACTTTCTGGCCATGCTGAACGATACCCGGCGGCAGATCAGG
AAGCTCTATTTGTCGGGTGAAGTGGCGGCTGCCAACTCGTACAGGCCCAT
CGTCCGGGATCTGGCAAAGCTGCTGATTCTGCTAAACAGGCCCATTGAAC
TGATTCCCGCCCCGCCGCCAGATTGGTCCAGGCTGTATGCCTGGTCGGAG
CAGGCCCTGGAGCGTTACAAGCCGCAGGTGGGCCAGCTTATCGACTTCTT
TCAGGCCTCACACGGTCACAGTGCTGGCCACCACGAGGTGCTCTACGCTG
CGCCGAACAAGAAGAAGCAACTGCAGCAGCCCAGCATCTTCCGGCAACAG
GTGACGCCCACGGCGACGCCGCAGGGAGTGGGCGAACTGATGGCCGGCGA
TCGGAGCAGCAGTGCCTCGGCGCAGCAGAAGCTACACCTGTTTGGCTCGC
TGATCAGCCTGCACGAGTTCGAGGAGCCGCGGGCTTCGGATCCTTTCGGC
AGCAGTTTCAACACGCTGAAGAGCGGCAATCTCATCTCTGATCTCAACGC
CAGCTCGCTGTGGCTGGAGGACGAGTTCTACAAGCTGGGCTTTCGACCGC
AGGACGAGATCACCACGGAGCTGTAAAAGCTTTCTAGACCAT
BS14883.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:11:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| T48-RB | 1260 | CG5507-PB | 1..1260 | 17..1276 | 6285 | 99.9 | Plus |
| T48-RA | 1260 | CG5507-PA | 1..1260 | 17..1276 | 6285 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:11:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| T48-RB | 2449 | CG5507-RB | 660..1919 | 17..1276 | 6285 | 99.9 | Plus |
| T48-RA | 2443 | CG5507-RA | 660..1919 | 17..1276 | 6285 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:11:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26909473..26910467 | 282..1276 | 4960 | 99.9 | Plus |
| 3R | 32079331 | 3R | 26883956..26884224 | 17..285 | 1345 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 08:11:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 7752..7804 | 544..597 | 114 | 70.4 | Plus |
BS14883.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:23 Download gff for
BS14883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| T48-RA | 1..1260 | 17..1276 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:39:17 Download gff for
BS14883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| T48-RA | 660..1917 | 17..1274 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:12 Download gff for
BS14883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| T48-RA | 660..1917 | 17..1274 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:23 Download gff for
BS14883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| T48-RA | 654..1923 | 10..1280 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:13:05 Download gff for
BS14883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| T48-RA | 660..1917 | 17..1274 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:13:05 Download gff for
BS14883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26883956..26884223 | 17..284 | 100 | -> | Plus |
| 3R | 26909476..26910465 | 285..1274 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:12 Download gff for
BS14883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22709678..22709945 | 17..284 | 100 | -> | Plus |
| arm_3R | 22735198..22736187 | 285..1274 | 99 | | Plus |
BS14883.pep Sequence
Translation from 16 to 1275
> BS14883.pep
MRSVEVAQSGPSAIFWLVQVLIVGAAQAATPFAKEYRNAGLYNGNTLVDL
DGSTTLDMGQEKPTSSSSGLSGGFKSESSVVLPGMLQNSGCPLTTSSHCL
RCNKVGCIKCPMYLVTDTRQCVDQCPAGYLDQWSAHTEFMGRVCVPTGYS
GPLMAALAGLLGGFLVCLSLLAVAVMLVKRKRRRKSIKQKLINENTMDRA
DFMRQLNEMRPNAEYFLAMLNDTRRQIRKLYLSGEVAAANSYRPIVRDLA
KLLILLNRPIELIPAPPPDWSRLYAWSEQALERYKPQVGQLIDFFQASHG
HSAGHHEVLYAAPNKKKQLQQPSIFRQQVTPTATPQGVGELMAGDRSSSA
SAQQKLHLFGSLISLHEFEEPRASDPFGSSFNTLKSGNLISDLNASSLWL
EDEFYKLGFRPQDEITTEL*
BS14883.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| T48-PB | 419 | CG5507-PB | 1..419 | 1..419 | 2173 | 100 | Plus |
| T48-PA | 419 | CG5507-PA | 1..419 | 1..419 | 2173 | 100 | Plus |
