Clone BS14888 Report

Search the DGRC for BS14888

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:148
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG2453-RA
Protein status:BS14888.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14888.3prime Sequence

871 bp (701 high quality bases) assembled on 2006-10-13

> BS14888.3prime
ATGGTCTAGAAAGCTTTCACAGTTTGAAGCCGGAGTGAATGCTGACCACG
CCGAAGGTTAGGTTCTCGTAGGACACCTGATCGAATCCGGCCTGCTCGAT
CATTTGCTTGAATTGCTCCTGCTTGGGAAACCGTCGGATGCTCTCAACGA
GATACTGGTACGCCTGCCACTGACCAGCCAGCAATTGGCCCATCGGCGGA
ATCACCTGGAAGGAGTACTGGTCATATAGCCATTGCATCGTTTCGTTCGT
CAGATGACTGAACTCCAGGCACATGAATCGTCCGCCCGGCTGCAGCACTC
GATACGCTTCAGAAAGAACCTTATCCACATGTGTGCAGTTCCTGATGCCA
AAGGCAATAGTGTAGGCCGTAAAGCTAGCGTCCGGGAAGGGCAACTTCTC
GGCATCGGCGCACTGCCATGCGACGGTGCAGTTGGACAGCTGGTCGGTGG
TAAGTCCCAGCCTCTTGGCCCGCTCCTCGCCCACGTTTAGCATGTGCTGG
TTGATGTCCGACACAGTGACGTGGCTGGGACGCTGTTGGGGATTCGGCTG
GTTGTTCAGATAACGCAGGTAGCGGAAGGTGATGTCCCCGGTGCCGCCAG
CCATGTCCAGCAAGCGCATACCGTGCGTGGGACCCAGTCGTTCGACGAAC
ACATCCTTCCACACGCGATGGATGCCCAGGGACATGGCATCGTTCATCAC
GTCATAGGAGTTGGCCACCTGTTCGAAGACCTCGTGAACCTTTTGTTCCT
TTTCACTTTCCCGAACTGTTTGGAAGCCGAAATGTGTGGTTTTCTCCTTT
CCGGAAATGGATTCCGCGCCACTTGCCATTCCTTTGGAGTTCTGGGCCGA
TTGAGATGCCGTTCGGGTGTG

BS14888.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG2453-PA 906 CG2453-RA 52..906 871..17 4225 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG2453-RC 1347 CG2453-RC 255..1113 871..13 4250 99.7 Minus
CG2453-RB 1231 CG2453-RB 139..997 871..13 4250 99.7 Minus
CG2453-RA 1188 CG2453-RA 96..954 871..13 4250 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13193686..13194107 318..739 2110 100 Plus
X 23542271 X 13193328..13193638 13..323 1525 99.4 Plus
X 23542271 X 13194165..13194297 739..871 650 99.2 Plus
Blast to na_te.dros performed on 2015-02-12 11:23:36 has no hits.

BS14888.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:34 Download gff for BS14888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2453-PA 52..906 17..871 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:27 Download gff for BS14888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2453-RA 77..935 13..871 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:32:21 Download gff for BS14888.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2453-RA 96..954 13..871 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:32:21 Download gff for BS14888.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13193328..13193634 13..319 99 <- Plus
X 13193688..13194106 320..738 100 <- Plus
X 13194165..13194297 739..871 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:27 Download gff for BS14888.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13088198..13088330 739..871 99   Plus
arm_X 13087361..13087667 13..319 99 <- Plus
arm_X 13087721..13088139 320..738 100 <- Plus

BS14888.5prime Sequence

835 bp (726 high quality bases) assembled on 2006-10-13

> BS14888.5prime
GAAGTTATCAGTCGACATGCAAACTACGAGGAGCACCCGGCTGCTGTCCT
TGGCCAGGAGATTCGTCCACACCCGAACGGCATCTCAATCGGCCCAGAAC
TCCAAAGGAATGGCAAGTGGCGCGGAATCCATCTCCGGAAAGGAGAAAAC
CACACATTTCGGCTTCCAAACAGTTCGGGAAAGTGAAAAGGAACAAAAGG
TTCACGAGGTCTTCGAACAGGTGGCCAACTCCTATGACGTGATGAACGAT
GCCATGTCCCTGGGCATCCATCGCGTGTGGAAGGATGTGTTCGTCGAACG
ACTGGGTCCCACGCACGGTATGCGCTTGCTGGACATGGCTGGCGGCACCG
GGGACATCACCTTCCGCTACCTGCGTTATCTGAACAACCAGCCGAATCCC
CAACAGCGTCCCAGCCACGTCACTGTGTCGGACATCAACCAGCACATGCT
AAACGTGGGCGAGGAGCGGGCCAAGAGGCTGGGACTTACCACCGACCAGC
TGTCCAACTGCACCGTCGCATGGCAGTGCGCCGATGCCGAGAAGTTGCCC
TTCCCGGACGCTAGCTTTACGGCCTACACTATTGCCTTTGGCATCAGGAA
CTGCACACATGTGGATAAGGTTCTTTCTGAAGCGTATCGAGTGCTGCAGC
CGGGCGGACGATTCATGTGCCTGGAGTTCAGTCATCTGACGAACGAAACG
ATGCAATGGCTATATGACCAGTACTCCTTCCAGGTGATTCCGCCGATGGG
CCAATTGCTGGCTGGTCAGTGGCAGGCGTACCAGTATCTCGTTGAGAGCA
TCCGACGGTTTCCCAAGCAGGAGCAATTCAAGCAA

BS14888.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG2453-PA 906 CG2453-RA 1..819 17..835 4070 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG2453-RC 1347 CG2453-RC 204..1022 17..835 4080 99.9 Plus
CG2453-RB 1231 CG2453-RB 88..906 17..835 4080 99.9 Plus
CG2453-RA 1188 CG2453-RA 45..863 17..835 4080 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:38:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13193686..13194107 621..200 2110 100 Minus
X 23542271 X 13193419..13193638 835..616 1085 99.5 Minus
X 23542271 X 13194165..13194348 200..17 920 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:38:51 has no hits.

BS14888.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:34 Download gff for BS14888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2453-PA 1..817 17..833 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:49 Download gff for BS14888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2453-RA 17..842 7..833 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:28:02 Download gff for BS14888.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2453-RA 36..861 7..833 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:28:02 Download gff for BS14888.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13194165..13194357 7..200 97   Minus
X 13193421..13193634 620..833 99 <- Minus
X 13193688..13194106 201..619 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:49 Download gff for BS14888.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13087454..13087667 620..833 99 <- Minus
arm_X 13087721..13088139 201..619 100 <- Minus
arm_X 13088198..13088390 7..200 97   Minus

BS14888.complete Sequence

938 bp assembled on 2006-11-01

GenBank Submission: FJ637822

> BS14888.complete
GAAGTTATCAGTCGACATGCAAACTACGAGGAGCACCCGGCTGCTGTCCT
TGGCCAGGAGATTCGTCCACACCCGAACGGCATCTCAATCGGCCCAGAAC
TCCAAAGGAATGGCAAGTGGCGCGGAATCCATCTCCGGAAAGGAGAAAAC
CACACATTTCGGCTTCCAAACAGTTCGGGAAAGTGAAAAGGAACAAAAGG
TTCACGAGGTCTTCGAACAGGTGGCCAACTCCTATGACGTGATGAACGAT
GCCATGTCCCTGGGCATCCATCGCGTGTGGAAGGATGTGTTCGTCGAACG
ACTGGGTCCCACGCACGGTATGCGCTTGCTGGACATGGCTGGCGGCACCG
GGGACATCACCTTCCGCTACCTGCGTTATCTGAACAACCAGCCGAATCCC
CAACAGCGTCCCAGCCACGTCACTGTGTCGGACATCAACCAGCACATGCT
AAACGTGGGCGAGGAGCGGGCCAAGAGGCTGGGACTTACCACCGACCAGC
TGTCCAACTGCACCGTCGCATGGCAGTGCGCCGATGCCGAGAAGTTGCCC
TTCCCGGACGCTAGCTTTACGGCCTACACTATTGCCTTTGGCATCAGGAA
CTGCACACATGTGGATAAGGTTCTTTCTGAAGCGTATCGAGTGCTGCAGC
CGGGCGGACGATTCATGTGCCTGGAGTTCAGTCATCTGACGAACGAAACG
ATGCAATGGCTATATGACCAGTACTCCTTCCAGGTGATTCCGCCGATGGG
CCAATTGCTGGCTGGTCAGTGGCAGGCGTACCAGTATCTCGTTGAGAGCA
TCCGACGGTTTCCCAAGCAGGAGCAATTCAAGCAAATGATCGAGCAGGCC
GGATTCGATCAGGTGTCCTACGAGAACCTAACCTTCGGCGTGGTCAGCAT
TCACTCCGGCTTCAAACTGTGAAAGCTTTCTAGACCAT

BS14888.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG2453-RC 906 CG2453-PC 1..906 17..922 4515 99.9 Plus
CG2453-RB 906 CG2453-PB 1..906 17..922 4515 99.9 Plus
CG2453-RA 906 CG2453-PA 1..906 17..922 4515 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG2453-RC 1347 CG2453-RC 204..1113 17..926 4520 99.8 Plus
CG2453-RB 1231 CG2453-RB 88..997 17..926 4520 99.8 Plus
CG2453-RA 1188 CG2453-RA 45..954 17..926 4520 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13193686..13194107 621..200 2110 100 Minus
X 23542271 X 13193328..13193638 926..616 1525 99.4 Minus
X 23542271 X 13194165..13194348 200..17 920 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:13:29 has no hits.

BS14888.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:24 Download gff for BS14888.complete
Subject Subject Range Query Range Percent Splice Strand
CG2453-RA 1..906 17..922 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:10 Download gff for BS14888.complete
Subject Subject Range Query Range Percent Splice Strand
CG2453-RA 17..935 7..926 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:59 Download gff for BS14888.complete
Subject Subject Range Query Range Percent Splice Strand
CG2453-RA 26..930 17..921 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:25 Download gff for BS14888.complete
Subject Subject Range Query Range Percent Splice Strand
CG2453-RA 17..935 7..926 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:49 Download gff for BS14888.complete
Subject Subject Range Query Range Percent Splice Strand
CG2453-RA 45..949 17..921 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:49 Download gff for BS14888.complete
Subject Subject Range Query Range Percent Splice Strand
X 13194165..13194348 17..200 100   Minus
X 13193333..13193634 620..921 99 <- Minus
X 13193688..13194106 201..619 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:59 Download gff for BS14888.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13088198..13088381 17..200 100   Minus
arm_X 13087366..13087667 620..921 99 <- Minus
arm_X 13087721..13088139 201..619 100 <- Minus

BS14888.pep Sequence

Translation from 16 to 921

> BS14888.pep
MQTTRSTRLLSLARRFVHTRTASQSAQNSKGMASGAESISGKEKTTHFGF
QTVRESEKEQKVHEVFEQVANSYDVMNDAMSLGIHRVWKDVFVERLGPTH
GMRLLDMAGGTGDITFRYLRYLNNQPNPQQRPSHVTVSDINQHMLNVGEE
RAKRLGLTTDQLSNCTVAWQCADAEKLPFPDASFTAYTIAFGIRNCTHVD
KVLSEAYRVLQPGGRFMCLEFSHLTNETMQWLYDQYSFQVIPPMGQLLAG
QWQAYQYLVESIRRFPKQEQFKQMIEQAGFDQVSYENLTFGVVSIHSGFK
L*

BS14888.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG2453-PC 301 CG2453-PC 1..301 1..301 1580 100 Plus
CG2453-PB 301 CG2453-PB 1..301 1..301 1580 100 Plus
CG2453-PA 301 CG2453-PA 1..301 1..301 1580 100 Plus