Clone Sequence Records
BS14888.3prime Sequence
871 bp (701 high quality bases) assembled on 2006-10-13
> BS14888.3prime
ATGGTCTAGAAAGCTTTCACAGTTTGAAGCCGGAGTGAATGCTGACCACG
CCGAAGGTTAGGTTCTCGTAGGACACCTGATCGAATCCGGCCTGCTCGAT
CATTTGCTTGAATTGCTCCTGCTTGGGAAACCGTCGGATGCTCTCAACGA
GATACTGGTACGCCTGCCACTGACCAGCCAGCAATTGGCCCATCGGCGGA
ATCACCTGGAAGGAGTACTGGTCATATAGCCATTGCATCGTTTCGTTCGT
CAGATGACTGAACTCCAGGCACATGAATCGTCCGCCCGGCTGCAGCACTC
GATACGCTTCAGAAAGAACCTTATCCACATGTGTGCAGTTCCTGATGCCA
AAGGCAATAGTGTAGGCCGTAAAGCTAGCGTCCGGGAAGGGCAACTTCTC
GGCATCGGCGCACTGCCATGCGACGGTGCAGTTGGACAGCTGGTCGGTGG
TAAGTCCCAGCCTCTTGGCCCGCTCCTCGCCCACGTTTAGCATGTGCTGG
TTGATGTCCGACACAGTGACGTGGCTGGGACGCTGTTGGGGATTCGGCTG
GTTGTTCAGATAACGCAGGTAGCGGAAGGTGATGTCCCCGGTGCCGCCAG
CCATGTCCAGCAAGCGCATACCGTGCGTGGGACCCAGTCGTTCGACGAAC
ACATCCTTCCACACGCGATGGATGCCCAGGGACATGGCATCGTTCATCAC
GTCATAGGAGTTGGCCACCTGTTCGAAGACCTCGTGAACCTTTTGTTCCT
TTTCACTTTCCCGAACTGTTTGGAAGCCGAAATGTGTGGTTTTCTCCTTT
CCGGAAATGGATTCCGCGCCACTTGCCATTCCTTTGGAGTTCTGGGCCGA
TTGAGATGCCGTTCGGGTGTG
BS14888.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2453-PA | 906 | CG2453-RA | 52..906 | 871..17 | 4225 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:23:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2453-RC | 1347 | CG2453-RC | 255..1113 | 871..13 | 4250 | 99.7 | Minus |
CG2453-RB | 1231 | CG2453-RB | 139..997 | 871..13 | 4250 | 99.7 | Minus |
CG2453-RA | 1188 | CG2453-RA | 96..954 | 871..13 | 4250 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:23:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13193686..13194107 | 318..739 | 2110 | 100 | Plus |
X | 23542271 | X | 13193328..13193638 | 13..323 | 1525 | 99.4 | Plus |
X | 23542271 | X | 13194165..13194297 | 739..871 | 650 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:23:36 has no hits.
BS14888.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:34 Download gff for
BS14888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2453-PA | 52..906 | 17..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:27 Download gff for
BS14888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2453-RA | 77..935 | 13..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:32:21 Download gff for
BS14888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2453-RA | 96..954 | 13..871 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:32:21 Download gff for
BS14888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13193328..13193634 | 13..319 | 99 | <- | Plus |
X | 13193688..13194106 | 320..738 | 100 | <- | Plus |
X | 13194165..13194297 | 739..871 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:27 Download gff for
BS14888.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13088198..13088330 | 739..871 | 99 | | Plus |
arm_X | 13087361..13087667 | 13..319 | 99 | <- | Plus |
arm_X | 13087721..13088139 | 320..738 | 100 | <- | Plus |
BS14888.5prime Sequence
835 bp (726 high quality bases) assembled on 2006-10-13
> BS14888.5prime
GAAGTTATCAGTCGACATGCAAACTACGAGGAGCACCCGGCTGCTGTCCT
TGGCCAGGAGATTCGTCCACACCCGAACGGCATCTCAATCGGCCCAGAAC
TCCAAAGGAATGGCAAGTGGCGCGGAATCCATCTCCGGAAAGGAGAAAAC
CACACATTTCGGCTTCCAAACAGTTCGGGAAAGTGAAAAGGAACAAAAGG
TTCACGAGGTCTTCGAACAGGTGGCCAACTCCTATGACGTGATGAACGAT
GCCATGTCCCTGGGCATCCATCGCGTGTGGAAGGATGTGTTCGTCGAACG
ACTGGGTCCCACGCACGGTATGCGCTTGCTGGACATGGCTGGCGGCACCG
GGGACATCACCTTCCGCTACCTGCGTTATCTGAACAACCAGCCGAATCCC
CAACAGCGTCCCAGCCACGTCACTGTGTCGGACATCAACCAGCACATGCT
AAACGTGGGCGAGGAGCGGGCCAAGAGGCTGGGACTTACCACCGACCAGC
TGTCCAACTGCACCGTCGCATGGCAGTGCGCCGATGCCGAGAAGTTGCCC
TTCCCGGACGCTAGCTTTACGGCCTACACTATTGCCTTTGGCATCAGGAA
CTGCACACATGTGGATAAGGTTCTTTCTGAAGCGTATCGAGTGCTGCAGC
CGGGCGGACGATTCATGTGCCTGGAGTTCAGTCATCTGACGAACGAAACG
ATGCAATGGCTATATGACCAGTACTCCTTCCAGGTGATTCCGCCGATGGG
CCAATTGCTGGCTGGTCAGTGGCAGGCGTACCAGTATCTCGTTGAGAGCA
TCCGACGGTTTCCCAAGCAGGAGCAATTCAAGCAA
BS14888.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2453-PA | 906 | CG2453-RA | 1..819 | 17..835 | 4070 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:38:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2453-RC | 1347 | CG2453-RC | 204..1022 | 17..835 | 4080 | 99.9 | Plus |
CG2453-RB | 1231 | CG2453-RB | 88..906 | 17..835 | 4080 | 99.9 | Plus |
CG2453-RA | 1188 | CG2453-RA | 45..863 | 17..835 | 4080 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:38:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13193686..13194107 | 621..200 | 2110 | 100 | Minus |
X | 23542271 | X | 13193419..13193638 | 835..616 | 1085 | 99.5 | Minus |
X | 23542271 | X | 13194165..13194348 | 200..17 | 920 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:38:51 has no hits.
BS14888.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:34 Download gff for
BS14888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2453-PA | 1..817 | 17..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:49 Download gff for
BS14888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2453-RA | 17..842 | 7..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:28:02 Download gff for
BS14888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2453-RA | 36..861 | 7..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:28:02 Download gff for
BS14888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13194165..13194357 | 7..200 | 97 | | Minus |
X | 13193421..13193634 | 620..833 | 99 | <- | Minus |
X | 13193688..13194106 | 201..619 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:49 Download gff for
BS14888.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13087454..13087667 | 620..833 | 99 | <- | Minus |
arm_X | 13087721..13088139 | 201..619 | 100 | <- | Minus |
arm_X | 13088198..13088390 | 7..200 | 97 | | Minus |
BS14888.complete Sequence
938 bp assembled on 2006-11-01
GenBank Submission: FJ637822
> BS14888.complete
GAAGTTATCAGTCGACATGCAAACTACGAGGAGCACCCGGCTGCTGTCCT
TGGCCAGGAGATTCGTCCACACCCGAACGGCATCTCAATCGGCCCAGAAC
TCCAAAGGAATGGCAAGTGGCGCGGAATCCATCTCCGGAAAGGAGAAAAC
CACACATTTCGGCTTCCAAACAGTTCGGGAAAGTGAAAAGGAACAAAAGG
TTCACGAGGTCTTCGAACAGGTGGCCAACTCCTATGACGTGATGAACGAT
GCCATGTCCCTGGGCATCCATCGCGTGTGGAAGGATGTGTTCGTCGAACG
ACTGGGTCCCACGCACGGTATGCGCTTGCTGGACATGGCTGGCGGCACCG
GGGACATCACCTTCCGCTACCTGCGTTATCTGAACAACCAGCCGAATCCC
CAACAGCGTCCCAGCCACGTCACTGTGTCGGACATCAACCAGCACATGCT
AAACGTGGGCGAGGAGCGGGCCAAGAGGCTGGGACTTACCACCGACCAGC
TGTCCAACTGCACCGTCGCATGGCAGTGCGCCGATGCCGAGAAGTTGCCC
TTCCCGGACGCTAGCTTTACGGCCTACACTATTGCCTTTGGCATCAGGAA
CTGCACACATGTGGATAAGGTTCTTTCTGAAGCGTATCGAGTGCTGCAGC
CGGGCGGACGATTCATGTGCCTGGAGTTCAGTCATCTGACGAACGAAACG
ATGCAATGGCTATATGACCAGTACTCCTTCCAGGTGATTCCGCCGATGGG
CCAATTGCTGGCTGGTCAGTGGCAGGCGTACCAGTATCTCGTTGAGAGCA
TCCGACGGTTTCCCAAGCAGGAGCAATTCAAGCAAATGATCGAGCAGGCC
GGATTCGATCAGGTGTCCTACGAGAACCTAACCTTCGGCGTGGTCAGCAT
TCACTCCGGCTTCAAACTGTGAAAGCTTTCTAGACCAT
BS14888.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:13:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2453-RC | 906 | CG2453-PC | 1..906 | 17..922 | 4515 | 99.9 | Plus |
CG2453-RB | 906 | CG2453-PB | 1..906 | 17..922 | 4515 | 99.9 | Plus |
CG2453-RA | 906 | CG2453-PA | 1..906 | 17..922 | 4515 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2453-RC | 1347 | CG2453-RC | 204..1113 | 17..926 | 4520 | 99.8 | Plus |
CG2453-RB | 1231 | CG2453-RB | 88..997 | 17..926 | 4520 | 99.8 | Plus |
CG2453-RA | 1188 | CG2453-RA | 45..954 | 17..926 | 4520 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13193686..13194107 | 621..200 | 2110 | 100 | Minus |
X | 23542271 | X | 13193328..13193638 | 926..616 | 1525 | 99.4 | Minus |
X | 23542271 | X | 13194165..13194348 | 200..17 | 920 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:13:29 has no hits.
BS14888.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:24 Download gff for
BS14888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2453-RA | 1..906 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:10 Download gff for
BS14888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2453-RA | 17..935 | 7..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:59 Download gff for
BS14888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2453-RA | 26..930 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:25 Download gff for
BS14888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2453-RA | 17..935 | 7..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:49 Download gff for
BS14888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2453-RA | 45..949 | 17..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:49 Download gff for
BS14888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13194165..13194348 | 17..200 | 100 | | Minus |
X | 13193333..13193634 | 620..921 | 99 | <- | Minus |
X | 13193688..13194106 | 201..619 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:59 Download gff for
BS14888.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13088198..13088381 | 17..200 | 100 | | Minus |
arm_X | 13087366..13087667 | 620..921 | 99 | <- | Minus |
arm_X | 13087721..13088139 | 201..619 | 100 | <- | Minus |
BS14888.pep Sequence
Translation from 16 to 921
> BS14888.pep
MQTTRSTRLLSLARRFVHTRTASQSAQNSKGMASGAESISGKEKTTHFGF
QTVRESEKEQKVHEVFEQVANSYDVMNDAMSLGIHRVWKDVFVERLGPTH
GMRLLDMAGGTGDITFRYLRYLNNQPNPQQRPSHVTVSDINQHMLNVGEE
RAKRLGLTTDQLSNCTVAWQCADAEKLPFPDASFTAYTIAFGIRNCTHVD
KVLSEAYRVLQPGGRFMCLEFSHLTNETMQWLYDQYSFQVIPPMGQLLAG
QWQAYQYLVESIRRFPKQEQFKQMIEQAGFDQVSYENLTFGVVSIHSGFK
L*
BS14888.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2453-PC | 301 | CG2453-PC | 1..301 | 1..301 | 1580 | 100 | Plus |
CG2453-PB | 301 | CG2453-PB | 1..301 | 1..301 | 1580 | 100 | Plus |
CG2453-PA | 301 | CG2453-PA | 1..301 | 1..301 | 1580 | 100 | Plus |