Clone BS14889 Report

Search the DGRC for BS14889

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:148
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptRpS19a-RA
Protein status:BS14889.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14889.3prime Sequence

501 bp (501 high quality bases) assembled on 2006-10-13

> BS14889.3prime
ATGGTCTAGAAAGCTTTTACTTGGAAATAACAATGGGCCCGGTCTGCTTG
GCGGCATCGCGCTGCTTGAACACGATCTGGTTAGCAATACGGTCCAGATC
ACGCTGTCCAATGGAGCTCAGTTTGCGACCACCGTCCGGGTGCTTCTCGA
CCAAACGGGCGTGCTCCAAGGCCTGCAGAGCCTTGCGGGCAGCACCGTCG
GCGGCGCGGCAGAAGTGCGAGGGGTGGACACCGTTGCGCTTGCGTCCGCC
GTAGATCTTGGTGATCGAACCGACTCCAGCGGGACTGCGGTGGTACAGAT
GGCGCAGGATCGAGGCGCAACGCACATAGAACCAGTCGGGATCGTAGGGC
GCCAGCTCCTTGAATTTGGCGGTCTTGACGATGTCCATCTGGTCGGGCAC
CTTCAACTTGCCAGTCTTCTTCAAGAAGACGGCGACCGCCTTGGTAACCG
CGTGCTGGTCAATATCCTTCACTGTGACGCCTGGCATGTCGACTGATAAC
T

BS14889.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4464-PA 471 RpS19a-RA 1..471 487..17 2355 100 Minus
CG4464-PB 471 RpS19a-RB 1..471 487..17 2355 100 Minus
CG4464-PC 471 RpS19a-RC 1..471 487..17 2355 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:56:09
Subject Length Description Subject Range Query Range Score Percent Strand
RpS19a-RE 678 CG4464-RE 93..563 487..17 2355 100 Minus
RpS19a-RA 620 CG4464-RA 35..505 487..17 2355 100 Minus
RpS19a-RC 925 CG4464-RC 340..810 487..17 2355 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16638406..16638805 416..17 2000 100 Minus
X 23542271 X 16638233..16638304 487..416 360 100 Minus
3R 32079331 3R 23933136..23933246 228..338 195 78.4 Plus
Blast to na_te.dros performed on 2015-02-12 17:56:07 has no hits.

BS14889.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:34 Download gff for BS14889.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4464-PC 1..471 17..487 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:45:16 Download gff for BS14889.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS19a-RB 53..527 17..492 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:53:14 Download gff for BS14889.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS19a-RC 340..810 17..487 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:53:14 Download gff for BS14889.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16638233..16638303 417..487 100 -> Minus
X 16638406..16638805 17..416 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:16 Download gff for BS14889.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16532266..16532336 417..487 100 -> Minus
arm_X 16532439..16532838 17..416 100   Minus

BS14889.5prime Sequence

501 bp (501 high quality bases) assembled on 2006-10-13

> BS14889.5prime
GAAGTTATCAGTCGACATGCCAGGCGTCACAGTGAAGGATATTGACCAGC
ACGCGGTTACCAAGGCGGTCGCCGTCTTCTTGAAGAAGACTGGCAAGTTG
AAGGTGCCCGACCAGATGGACATCGTCAAGACCGCCAAATTCAAGGAGCT
GGCGCCCTACGATCCCGACTGGTTCTATGTGCGTTGCGCCTCGATCCTGC
GCCATCTGTACCACCGCAGTCCCGCTGGAGTCGGTTCGATCACCAAGATC
TACGGCGGACGCAAGCGCAACGGTGTCCACCCCTCGCACTTCTGCCGCGC
CGCCGACGGTGCTGCCCGCAAGGCTCTGCAGGCCTTGGAGCACGCCCGTT
TGGTCGAGAAGCACCCGGACGGTGGTCGCAAACTGAGCTCCATTGGACAG
CGTGATCTGGACCGTATTGCTAACCAGATCGTGTTCAAGCAGCGCGATGC
CGCCAAGCAGACCGGGCCCATTGTTATTTCCAAGTAAAAGCTTTCTAGAC
C

BS14889.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4464-PA 471 RpS19a-RA 1..471 17..487 2355 100 Plus
CG4464-PB 471 RpS19a-RB 1..471 17..487 2355 100 Plus
CG4464-PC 471 RpS19a-RC 1..471 17..487 2355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
RpS19a-RE 678 CG4464-RE 93..563 17..487 2355 100 Plus
RpS19a-RA 620 CG4464-RA 35..505 17..487 2355 100 Plus
RpS19a-RC 925 CG4464-RC 340..810 17..487 2355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:04:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16638406..16638805 88..487 2000 100 Plus
X 23542271 X 16638233..16638304 17..88 360 100 Plus
3R 32079331 3R 23933136..23933246 276..166 195 78.4 Minus
Blast to na_te.dros performed on 2015-02-12 04:04:32 has no hits.

BS14889.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:35 Download gff for BS14889.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4464-PC 1..471 17..487 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:38 Download gff for BS14889.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS19a-RB 53..527 12..487 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:34 Download gff for BS14889.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS19a-RC 340..810 17..487 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:34 Download gff for BS14889.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16638233..16638303 17..87 100 -> Plus
X 16638406..16638805 88..487 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:38 Download gff for BS14889.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16532266..16532336 17..87 100 -> Plus
arm_X 16532439..16532838 88..487 100   Plus

BS14889.complete Sequence

503 bp assembled on 2006-11-01

GenBank Submission: FJ637823

> BS14889.complete
GAAGTTATCAGTCGACATGCCAGGCGTCACAGTGAAGGATATTGACCAGC
ACGCGGTTACCAAGGCGGTCGCCGTCTTCTTGAAGAAGACTGGCAAGTTG
AAGGTGCCCGACCAGATGGACATCGTCAAGACCGCCAAATTCAAGGAGCT
GGCGCCCTACGATCCCGACTGGTTCTATGTGCGTTGCGCCTCGATCCTGC
GCCATCTGTACCACCGCAGTCCCGCTGGAGTCGGTTCGATCACCAAGATC
TACGGCGGACGCAAGCGCAACGGTGTCCACCCCTCGCACTTCTGCCGCGC
CGCCGACGGTGCTGCCCGCAAGGCTCTGCAGGCCTTGGAGCACGCCCGTT
TGGTCGAGAAGCACCCGGACGGTGGTCGCAAACTGAGCTCCATTGGACAG
CGTGATCTGGACCGTATTGCTAACCAGATCGTGTTCAAGCAGCGCGATGC
CGCCAAGCAGACCGGGCCCATTGTTATTTCCAAGTAAAAGCTTTCTAGAC
CAT

BS14889.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:15:20
Subject Length Description Subject Range Query Range Score Percent Strand
RpS19a-RE 471 CG4464-PE 1..471 17..487 2355 100 Plus
RpS19a-RA 471 CG4464-PA 1..471 17..487 2355 100 Plus
RpS19a-RC 471 CG4464-PC 1..471 17..487 2355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:21
Subject Length Description Subject Range Query Range Score Percent Strand
RpS19a-RE 678 CG4464-RE 93..563 17..487 2355 100 Plus
RpS19a-RA 620 CG4464-RA 35..505 17..487 2355 100 Plus
RpS19a-RC 925 CG4464-RC 340..810 17..487 2355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16638406..16638805 88..487 2000 100 Plus
X 23542271 X 16638233..16638304 17..88 360 100 Plus
3R 32079331 3R 23933136..23933246 276..166 195 78.4 Minus
Blast to na_te.dros performed on 2014-11-27 01:15:19 has no hits.

BS14889.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:42 Download gff for BS14889.complete
Subject Subject Range Query Range Percent Splice Strand
RpS19a-RA 1..471 17..487 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:28 Download gff for BS14889.complete
Subject Subject Range Query Range Percent Splice Strand
RpS19a-RC 314..784 17..487 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:12 Download gff for BS14889.complete
Subject Subject Range Query Range Percent Splice Strand
RpS19a-RB 57..525 17..485 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:42 Download gff for BS14889.complete
Subject Subject Range Query Range Percent Splice Strand
RpS19a-RC 314..784 17..487 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:21:51 Download gff for BS14889.complete
Subject Subject Range Query Range Percent Splice Strand
RpS19a-RC 340..808 17..485 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:21:51 Download gff for BS14889.complete
Subject Subject Range Query Range Percent Splice Strand
X 16638233..16638303 17..87 100 -> Plus
X 16638406..16638803 88..485 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:12 Download gff for BS14889.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16532266..16532336 17..87 100 -> Plus
arm_X 16532439..16532836 88..485 100   Plus

BS14889.pep Sequence

Translation from 16 to 486

> BS14889.pep
MPGVTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDP
DWFYVRCASILRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAA
RKALQALEHARLVEKHPDGGRKLSSIGQRDLDRIANQIVFKQRDAAKQTG
PIVISK*

BS14889.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
RpS19a-PE 156 CG4464-PE 1..156 1..156 812 100 Plus
RpS19a-PA 156 CG4464-PA 1..156 1..156 812 100 Plus
RpS19a-PC 156 CG4464-PC 1..156 1..156 812 100 Plus
RpS19a-PB 156 CG4464-PB 1..156 1..156 812 100 Plus
RpS19a-PD 156 CG4464-PD 1..156 1..156 812 100 Plus