Clone Sequence Records
BS14889.3prime Sequence
501 bp (501 high quality bases) assembled on 2006-10-13
> BS14889.3prime
ATGGTCTAGAAAGCTTTTACTTGGAAATAACAATGGGCCCGGTCTGCTTG
GCGGCATCGCGCTGCTTGAACACGATCTGGTTAGCAATACGGTCCAGATC
ACGCTGTCCAATGGAGCTCAGTTTGCGACCACCGTCCGGGTGCTTCTCGA
CCAAACGGGCGTGCTCCAAGGCCTGCAGAGCCTTGCGGGCAGCACCGTCG
GCGGCGCGGCAGAAGTGCGAGGGGTGGACACCGTTGCGCTTGCGTCCGCC
GTAGATCTTGGTGATCGAACCGACTCCAGCGGGACTGCGGTGGTACAGAT
GGCGCAGGATCGAGGCGCAACGCACATAGAACCAGTCGGGATCGTAGGGC
GCCAGCTCCTTGAATTTGGCGGTCTTGACGATGTCCATCTGGTCGGGCAC
CTTCAACTTGCCAGTCTTCTTCAAGAAGACGGCGACCGCCTTGGTAACCG
CGTGCTGGTCAATATCCTTCACTGTGACGCCTGGCATGTCGACTGATAAC
T
BS14889.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4464-PA | 471 | RpS19a-RA | 1..471 | 487..17 | 2355 | 100 | Minus |
CG4464-PB | 471 | RpS19a-RB | 1..471 | 487..17 | 2355 | 100 | Minus |
CG4464-PC | 471 | RpS19a-RC | 1..471 | 487..17 | 2355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:56:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS19a-RE | 678 | CG4464-RE | 93..563 | 487..17 | 2355 | 100 | Minus |
RpS19a-RA | 620 | CG4464-RA | 35..505 | 487..17 | 2355 | 100 | Minus |
RpS19a-RC | 925 | CG4464-RC | 340..810 | 487..17 | 2355 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:56:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16638406..16638805 | 416..17 | 2000 | 100 | Minus |
X | 23542271 | X | 16638233..16638304 | 487..416 | 360 | 100 | Minus |
3R | 32079331 | 3R | 23933136..23933246 | 228..338 | 195 | 78.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:56:07 has no hits.
BS14889.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:34 Download gff for
BS14889.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4464-PC | 1..471 | 17..487 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:45:16 Download gff for
BS14889.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19a-RB | 53..527 | 17..492 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:53:14 Download gff for
BS14889.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19a-RC | 340..810 | 17..487 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:53:14 Download gff for
BS14889.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16638233..16638303 | 417..487 | 100 | -> | Minus |
X | 16638406..16638805 | 17..416 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:16 Download gff for
BS14889.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16532266..16532336 | 417..487 | 100 | -> | Minus |
arm_X | 16532439..16532838 | 17..416 | 100 | | Minus |
BS14889.5prime Sequence
501 bp (501 high quality bases) assembled on 2006-10-13
> BS14889.5prime
GAAGTTATCAGTCGACATGCCAGGCGTCACAGTGAAGGATATTGACCAGC
ACGCGGTTACCAAGGCGGTCGCCGTCTTCTTGAAGAAGACTGGCAAGTTG
AAGGTGCCCGACCAGATGGACATCGTCAAGACCGCCAAATTCAAGGAGCT
GGCGCCCTACGATCCCGACTGGTTCTATGTGCGTTGCGCCTCGATCCTGC
GCCATCTGTACCACCGCAGTCCCGCTGGAGTCGGTTCGATCACCAAGATC
TACGGCGGACGCAAGCGCAACGGTGTCCACCCCTCGCACTTCTGCCGCGC
CGCCGACGGTGCTGCCCGCAAGGCTCTGCAGGCCTTGGAGCACGCCCGTT
TGGTCGAGAAGCACCCGGACGGTGGTCGCAAACTGAGCTCCATTGGACAG
CGTGATCTGGACCGTATTGCTAACCAGATCGTGTTCAAGCAGCGCGATGC
CGCCAAGCAGACCGGGCCCATTGTTATTTCCAAGTAAAAGCTTTCTAGAC
C
BS14889.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4464-PA | 471 | RpS19a-RA | 1..471 | 17..487 | 2355 | 100 | Plus |
CG4464-PB | 471 | RpS19a-RB | 1..471 | 17..487 | 2355 | 100 | Plus |
CG4464-PC | 471 | RpS19a-RC | 1..471 | 17..487 | 2355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:04:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS19a-RE | 678 | CG4464-RE | 93..563 | 17..487 | 2355 | 100 | Plus |
RpS19a-RA | 620 | CG4464-RA | 35..505 | 17..487 | 2355 | 100 | Plus |
RpS19a-RC | 925 | CG4464-RC | 340..810 | 17..487 | 2355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:04:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16638406..16638805 | 88..487 | 2000 | 100 | Plus |
X | 23542271 | X | 16638233..16638304 | 17..88 | 360 | 100 | Plus |
3R | 32079331 | 3R | 23933136..23933246 | 276..166 | 195 | 78.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:04:32 has no hits.
BS14889.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:35 Download gff for
BS14889.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4464-PC | 1..471 | 17..487 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:38 Download gff for
BS14889.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19a-RB | 53..527 | 12..487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:34 Download gff for
BS14889.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19a-RC | 340..810 | 17..487 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:34 Download gff for
BS14889.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16638233..16638303 | 17..87 | 100 | -> | Plus |
X | 16638406..16638805 | 88..487 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:38 Download gff for
BS14889.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16532266..16532336 | 17..87 | 100 | -> | Plus |
arm_X | 16532439..16532838 | 88..487 | 100 | | Plus |
BS14889.complete Sequence
503 bp assembled on 2006-11-01
GenBank Submission: FJ637823
> BS14889.complete
GAAGTTATCAGTCGACATGCCAGGCGTCACAGTGAAGGATATTGACCAGC
ACGCGGTTACCAAGGCGGTCGCCGTCTTCTTGAAGAAGACTGGCAAGTTG
AAGGTGCCCGACCAGATGGACATCGTCAAGACCGCCAAATTCAAGGAGCT
GGCGCCCTACGATCCCGACTGGTTCTATGTGCGTTGCGCCTCGATCCTGC
GCCATCTGTACCACCGCAGTCCCGCTGGAGTCGGTTCGATCACCAAGATC
TACGGCGGACGCAAGCGCAACGGTGTCCACCCCTCGCACTTCTGCCGCGC
CGCCGACGGTGCTGCCCGCAAGGCTCTGCAGGCCTTGGAGCACGCCCGTT
TGGTCGAGAAGCACCCGGACGGTGGTCGCAAACTGAGCTCCATTGGACAG
CGTGATCTGGACCGTATTGCTAACCAGATCGTGTTCAAGCAGCGCGATGC
CGCCAAGCAGACCGGGCCCATTGTTATTTCCAAGTAAAAGCTTTCTAGAC
CAT
BS14889.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:15:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS19a-RE | 471 | CG4464-PE | 1..471 | 17..487 | 2355 | 100 | Plus |
RpS19a-RA | 471 | CG4464-PA | 1..471 | 17..487 | 2355 | 100 | Plus |
RpS19a-RC | 471 | CG4464-PC | 1..471 | 17..487 | 2355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:15:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS19a-RE | 678 | CG4464-RE | 93..563 | 17..487 | 2355 | 100 | Plus |
RpS19a-RA | 620 | CG4464-RA | 35..505 | 17..487 | 2355 | 100 | Plus |
RpS19a-RC | 925 | CG4464-RC | 340..810 | 17..487 | 2355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:15:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16638406..16638805 | 88..487 | 2000 | 100 | Plus |
X | 23542271 | X | 16638233..16638304 | 17..88 | 360 | 100 | Plus |
3R | 32079331 | 3R | 23933136..23933246 | 276..166 | 195 | 78.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:15:19 has no hits.
BS14889.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:42 Download gff for
BS14889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19a-RA | 1..471 | 17..487 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:28 Download gff for
BS14889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19a-RC | 314..784 | 17..487 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:12 Download gff for
BS14889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19a-RB | 57..525 | 17..485 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:42 Download gff for
BS14889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19a-RC | 314..784 | 17..487 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:21:51 Download gff for
BS14889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS19a-RC | 340..808 | 17..485 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:21:51 Download gff for
BS14889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16638233..16638303 | 17..87 | 100 | -> | Plus |
X | 16638406..16638803 | 88..485 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:12 Download gff for
BS14889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16532266..16532336 | 17..87 | 100 | -> | Plus |
arm_X | 16532439..16532836 | 88..485 | 100 | | Plus |
BS14889.pep Sequence
Translation from 16 to 486
> BS14889.pep
MPGVTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDP
DWFYVRCASILRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAA
RKALQALEHARLVEKHPDGGRKLSSIGQRDLDRIANQIVFKQRDAAKQTG
PIVISK*
BS14889.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:41:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS19a-PE | 156 | CG4464-PE | 1..156 | 1..156 | 812 | 100 | Plus |
RpS19a-PA | 156 | CG4464-PA | 1..156 | 1..156 | 812 | 100 | Plus |
RpS19a-PC | 156 | CG4464-PC | 1..156 | 1..156 | 812 | 100 | Plus |
RpS19a-PB | 156 | CG4464-PB | 1..156 | 1..156 | 812 | 100 | Plus |
RpS19a-PD | 156 | CG4464-PD | 1..156 | 1..156 | 812 | 100 | Plus |