Clone Sequence Records
BS14892.3prime Sequence
766 bp (718 high quality bases) assembled on 2006-10-13
> BS14892.3prime
ATGGTCTAGAAAGCTTTTACGGCTTTATGTTGAGGCCATCGACGTACTTG
CGGATCGCCAACACGTCCGTCGGATAGACCCGGCAACAGCCGCCAACGAT
GCGCACTCCCAGCTGGATCCACTCGGGCACAAACTTGACCACCTCCTCGC
CGGTTCCAGTCCAATCTCCCTGCTCGACGTCGTAGATCTCGCCGCGATTG
CTGTAGACCACCAGTGGGATGCGATCCGAACCGGCCACTTTGGTAAGCGA
TGATAGCAAAGGGGTCACGAATAGTGGGTTTACACAGTTCAGACCGATCC
CAAGGAGCCGGTTTTCAGCCTTCCGACTTTGGACCAACCGCCAGAGGGAG
AGAGCCGCCTCCGCGAAGTTTTCTCCACTAGCCATGTGCTTTTCATCCAT
GCACTGCAGGGAGACCCAGAATTTGGCATCCGGAAAGTTGTCCAGTACTA
ATTCGGTGACTGCCTCTGCCTCCATCAGACATGGAAGTGTTTCCAGGGCC
AATCCATCCACTCCAGCTGCGAGACAAATCTCAATTCTTGTCTTGTGCCA
CGCCCTCAGCTCCTCCTTGGACATCTTGTCCGCATAGTTGCCGGTGTACT
CAGATCCATCGTGGAGATAGGCGCCATATGGACCTATTGAGCCCATGATC
AGTGGAAGAGCCGACTCCGCTTCAGAACCGATTTCGCTAAGGTACTGTTC
CTTTGCCTGCTTGGCCAGTTGAACGCTCTTTTGGATCAACTCCACACCTC
GTTCTCTGGTCACGCC
BS14892.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10623-PA | 996 | CG10623-RA | 247..996 | 766..17 | 3725 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:30:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10623-RC | 1725 | CG10623-RC | 513..1262 | 766..17 | 3735 | 99.9 | Minus |
CG10623-RB | 1494 | CG10623-RB | 282..1031 | 766..17 | 3735 | 99.9 | Minus |
CG10623-RA | 1583 | CG10623-RA | 371..1120 | 766..17 | 3735 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:30:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18955944..18956325 | 17..398 | 1895 | 99.7 | Plus |
2L | 23513712 | 2L | 18956430..18956799 | 397..766 | 1850 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:30:20 has no hits.
BS14892.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:37 Download gff for
BS14892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10623-PA | 247..996 | 17..766 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:26:27 Download gff for
BS14892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10623-RA | 371..1120 | 17..766 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:54 Download gff for
BS14892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10623-RA | 371..1120 | 17..766 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:54 Download gff for
BS14892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18955944..18956324 | 17..397 | 99 | <- | Plus |
2L | 18956431..18956799 | 398..766 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:26:27 Download gff for
BS14892.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18955944..18956324 | 17..397 | 99 | <- | Plus |
arm_2L | 18956431..18956799 | 398..766 | 100 | | Plus |
BS14892.5prime Sequence
807 bp (694 high quality bases) assembled on 2006-10-13
> BS14892.5prime
GAAGTTATCAGTCGACATGGAAGTGAATCAAAAATGGAACTGGGACACCA
AGCCAATTCTGGTCAAATGCGGAGGATTCTCCTCGCAATTGGCCAAGAAT
GTCACCGAAAAAGTGGACGGTGATCCACTGTGGGGATCGCGATTCGATGC
CACCAATCCGGAAGCTGTGATCCAAACACATCTGGACTTTCTCCGCAACG
GAGCGGATATTATTCTAACCAACACGTATCAGTCCAGCGTCGAGGGATTC
GTGAAGTACCTGGGCGTGACCAGAGAACGAGGTGTGGAGTTGATCCAAAA
GAGCGTTCAACTGGCCAAGCAGGCAAAGGAACAGTACCTTAGCGAAATCG
GTTCTGAAGCGGAGTCGGCTCTTCCACTGATCATGGGCTCAATAGGTCCA
TATGGCGCCTATCTCCACGATGGATCTGAGTACACCGGCAACTATGCGGA
CAAGATGTCCAAGGAGGAGCTGAGGGCGTGGCACAAGACAAGAATTGAGA
TTTGTCTCGCAGCTGGAGTGGATGGATTGGCCCTGGAAACACTTCCATGT
CTGATGGAGGCAGAGGCAGTCACCGAATTAGTACTGGACAACTTTCCGGA
TGCCAAATTCTGGGTCTCCCTGCAGTGCATGGATGAAAAGCACATGGCTA
GTGGAGAAAACTTCGCGGAGGCGGCTCTCTCCCTCTGGCGGTTGGTCCCA
AGTCGGAAGGCTGAAAACCGGCTCCTTGGGATCGGTCTGAACTGTGTAAA
CCCACTATTCGTGACCCCTTTGCTATCATCGCTTACCAAAGGGGCCGGTT
CGGATCG
BS14892.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10623-PA | 996 | CG10623-RA | 1..791 | 17..807 | 3855 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:56:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10623-RC | 1725 | CG10623-RC | 264..1057 | 14..807 | 3910 | 99.5 | Plus |
CG10623-RB | 1494 | CG10623-RB | 33..826 | 14..807 | 3910 | 99.5 | Plus |
CG10623-RA | 1583 | CG10623-RA | 122..915 | 14..807 | 3910 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:56:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18956430..18957048 | 632..14 | 3080 | 99.8 | Minus |
2L | 23513712 | 2L | 18956149..18956325 | 807..631 | 840 | 98.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:56:14 has no hits.
BS14892.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:37 Download gff for
BS14892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10623-PA | 1..791 | 17..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:45:18 Download gff for
BS14892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10623-RA | 122..915 | 14..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:53:40 Download gff for
BS14892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10623-RA | 122..915 | 14..807 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:53:40 Download gff for
BS14892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18956149..18956324 | 632..807 | 98 | <- | Minus |
2L | 18956431..18957048 | 14..631 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:18 Download gff for
BS14892.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18956149..18956324 | 632..807 | 98 | <- | Minus |
arm_2L | 18956431..18957048 | 14..631 | 99 | | Minus |
BS14892.complete Sequence
1028 bp assembled on 2006-11-01
GenBank Submission: FJ637824
> BS14892.complete
GAAGTTATCAGTCGACATGGAAGTGAATCAAAAATGGAACTGGGACACCA
AGCCAATTCTGGTCAAATGCGGAGGATTCTCCTCGCAATTGGCCAAGAAT
GTCACCGAAAAAGTGGACGGTGATCCACTGTGGGGATCGCGATTCGATGC
CACCAATCCGGAAGCTGTGATCCAAACACATCTGGACTTTCTCCGCAACG
GAGCGGATATTATTCTAACCAACACGTATCAGTCCAGCGTCGAGGGATTC
GTGAAGTACCTGGGCGTGACCAGAGAACGAGGTGTGGAGTTGATCCAAAA
GAGCGTTCAACTGGCCAAGCAGGCAAAGGAACAGTACCTTAGCGAAATCG
GTTCTGAAGCGGAGTCGGCTCTTCCACTGATCATGGGCTCAATAGGTCCA
TATGGCGCCTATCTCCACGATGGATCTGAGTACACCGGCAACTATGCGGA
CAAGATGTCCAAGGAGGAGCTGAGGGCGTGGCACAAGACAAGAATTGAGA
TTTGTCTCGCAGCTGGAGTGGATGGATTGGCCCTGGAAACACTTCCATGT
CTGATGGAGGCAGAGGCAGTCACCGAATTAGTACTGGACAACTTTCCGGA
TGCCAAATTCTGGGTCTCCCTGCAGTGCATGGATGAAAAGCACATGGCTA
GTGGAGAAAACTTCGCGGAGGCGGCTCTCTCCCTCTGGCGGTTGGTCCAA
AGTCGGAAGGCTGAAAACCGGCTCCTTGGGATCGGTCTGAACTGTGTAAA
CCCACTATTCGTGACCCCTTTGCTATCATCGCTTACCAAAGTGGCCGGTT
CGGATCGCATCCCACTGGTGGTCTACAGCAATCGCGGCGAGATCTACGAC
GTCGAGCAGGGAGATTGGACTGGAACCGGCGAGGAGGTGGTCAAGTTTGT
GCCCGAGTGGATCCAGCTGGGAGTGCGCATCGTTGGCGGCTGTTGCCGGG
TCTATCCGACGGACGTGTTGGCGATCCGCAAGTACGTCGATGGCCTCAAC
ATAAAGCCGTAAAAGCTTTCTAGACCAT
BS14892.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:53:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10623-RC | 996 | CG10623-PC | 1..996 | 17..1012 | 4950 | 99.8 | Plus |
CG10623-RB | 996 | CG10623-PB | 1..996 | 17..1012 | 4950 | 99.8 | Plus |
CG10623-RA | 996 | CG10623-PA | 1..996 | 17..1012 | 4950 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:53:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10623-RC | 1725 | CG10623-RC | 264..1262 | 14..1012 | 4965 | 99.8 | Plus |
CG10623-RB | 1494 | CG10623-RB | 33..1031 | 14..1012 | 4965 | 99.8 | Plus |
CG10623-RA | 1583 | CG10623-RA | 122..1120 | 14..1012 | 4965 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:53:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18956430..18957048 | 632..14 | 3080 | 99.8 | Minus |
2L | 23513712 | 2L | 18955944..18956325 | 1012..631 | 1895 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:53:47 has no hits.
BS14892.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:26 Download gff for
BS14892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10623-RA | 1..996 | 17..1012 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:12 Download gff for
BS14892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10623-RA | 122..1120 | 14..1012 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:25 Download gff for
BS14892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10623-RA | 125..1118 | 17..1010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:26 Download gff for
BS14892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10623-RA | 116..1114 | 14..1012 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:33:52 Download gff for
BS14892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10623-RA | 125..1118 | 17..1010 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:33:52 Download gff for
BS14892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18955946..18956324 | 632..1010 | 99 | <- | Minus |
2L | 18956431..18957045 | 17..631 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:25 Download gff for
BS14892.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18955946..18956324 | 632..1010 | 99 | <- | Minus |
arm_2L | 18956431..18957045 | 17..631 | 99 | | Minus |
BS14892.pep Sequence
Translation from 16 to 1011
> BS14892.pep
MEVNQKWNWDTKPILVKCGGFSSQLAKNVTEKVDGDPLWGSRFDATNPEA
VIQTHLDFLRNGADIILTNTYQSSVEGFVKYLGVTRERGVELIQKSVQLA
KQAKEQYLSEIGSEAESALPLIMGSIGPYGAYLHDGSEYTGNYADKMSKE
ELRAWHKTRIEICLAAGVDGLALETLPCLMEAEAVTELVLDNFPDAKFWV
SLQCMDEKHMASGENFAEAALSLWRLVQSRKAENRLLGIGLNCVNPLFVT
PLLSSLTKVAGSDRIPLVVYSNRGEIYDVEQGDWTGTGEEVVKFVPEWIQ
LGVRIVGGCCRVYPTDVLAIRKYVDGLNIKP*
BS14892.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10623-PC | 331 | CG10623-PC | 1..331 | 1..331 | 1733 | 100 | Plus |
CG10623-PB | 331 | CG10623-PB | 1..331 | 1..331 | 1733 | 100 | Plus |
CG10623-PA | 331 | CG10623-PA | 1..331 | 1..331 | 1733 | 100 | Plus |
CG10621-PC | 331 | CG10621-PC | 6..325 | 14..328 | 915 | 53.7 | Plus |
CG10621-PB | 331 | CG10621-PB | 6..325 | 14..328 | 915 | 53.7 | Plus |