Clone BS14895 Report

Search the DGRC for BS14895

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:148
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptmRpL18-RA
Protein status:BS14895.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14895.3prime Sequence

591 bp (591 high quality bases) assembled on 2006-10-13

> BS14895.3prime
ATGGTCTAGAAAGCTTTTATTTTGATTTGGGTGCTTCCAGTGCGTCTTCC
GACACCTCCCAGGGCTTCTCATGCCTCTTCTCATCCCAGGGCTGCTCGTT
GGGCAGGCGAGAGGGTTCCTTGAAGGACACCCCATTATCCTGAATGGTTT
GAAGCAGCTTCTGCAGCTTGCTACCCGGTACCGCCTCCACGTTGCAGGTC
ATTTCCGTGATCCCAGACTGCAGGCAGCGCTGTGCGAGCACTCTGCCGAG
ATTTACAAACGCAGATGTGTCGTTGGTCTTGTACAACTGCTGTTTAATGG
CCCATTCCGAGGTGCTGGCACTCAGGATGGTTCCATTCTCAAAGTGCTTG
ACATCGCCGCTGACATAGCGGCCGCTGGTGTTGATTTCCAAAGTGTGCCA
GTAGGAACGACCTGGTTTCTCCAGATGATAGCCTACCGGCTTGTAGGCAA
TGCGTAATCTTTCCAAGTTCCGTGGATTCCGGTTGATCACGTATTCAGTG
CTGGCTTGCGGGGTTGTTAATTCCTTGATTTTGTGCAGTACACGGGCGGA
GGTGAGGGGGCGAGCACTGCGAGACATGTCGACTGATAACT

BS14895.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG12373-PA 561 mRpL18-RA 1..561 577..17 2805 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:56:22
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL18-RA 740 CG12373-RA 121..681 577..17 2805 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12756554..12757114 577..17 2805 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:56:21 has no hits.

BS14895.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:40 Download gff for BS14895.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12373-PA 1..561 17..577 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:45:20 Download gff for BS14895.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL18-RA 121..681 17..577 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:54:06 Download gff for BS14895.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL18-RA 121..681 17..577 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:54:06 Download gff for BS14895.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12756554..12757114 17..577 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:20 Download gff for BS14895.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8644059..8644619 17..577 100   Minus

BS14895.5prime Sequence

591 bp (591 high quality bases) assembled on 2006-10-13

> BS14895.5prime
GAAGTTATCAGTCGACATGTCTCGCAGTGCTCGCCCCCTCACCTCCGCCC
GTGTACTGCACAAAATCAAGGAATTAACAACCCCGCAAGCCAGCACTGAA
TACGTGATCAACCGGAATCCACGGAACTTGGAAAGATTACGCATTGCCTA
CAAGCCGGTAGGCTATCATCTGGAGAAACCAGGTCGTTCCTACTGGCACA
CTTTGGAAATCAACACCAGCGGCCGCTATGTCAGCGGCGATGTCAAGCAC
TTTGAGAATGGAACCATCCTGAGTGCCAGCACCTCGGAATGGGCCATTAA
ACAGCAGTTGTACAAGACCAACGACACATCTGCGTTTGTAAATCTCGGCA
GAGTGCTCGCACAGCGCTGCCTGCAGTCTGGGATCACGGAAATGACCTGC
AACGTGGAGGCGGTACCGGGTAGCAAGCTGCAGAAGCTGCTTCAAACCAT
TCAGGATAATGGGGTGTCCTTCAAGGAACCCTCTCGCCTGCCCAACGAGC
AGCCCTGGGATGAGAAGAGGCATGAGAAGCCCTGGGAGGTGTCGGAAGAC
GCACTGGAAGCACCCAAATCAAAATAAAAGCTTTCTAGACC

BS14895.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG12373-PA 561 mRpL18-RA 1..561 17..577 2805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:53:14
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL18-RA 740 CG12373-RA 121..681 17..577 2805 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12756554..12757114 17..577 2805 100 Plus
Blast to na_te.dros performed on 2015-02-03 06:53:11 has no hits.

BS14895.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:40 Download gff for BS14895.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12373-PA 1..561 17..577 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:52 Download gff for BS14895.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL18-RA 121..681 17..577 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:18 Download gff for BS14895.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL18-RA 121..681 17..577 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:18 Download gff for BS14895.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12756554..12757114 17..577 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:52 Download gff for BS14895.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8644059..8644619 17..577 100   Plus

BS14895.complete Sequence

593 bp assembled on 2006-11-01

GenBank Submission: FJ637826

> BS14895.complete
GAAGTTATCAGTCGACATGTCTCGCAGTGCTCGCCCCCTCACCTCCGCCC
GTGTACTGCACAAAATCAAGGAATTAACAACCCCGCAAGCCAGCACTGAA
TACGTGATCAACCGGAATCCACGGAACTTGGAAAGATTACGCATTGCCTA
CAAGCCGGTAGGCTATCATCTGGAGAAACCAGGTCGTTCCTACTGGCACA
CTTTGGAAATCAACACCAGCGGCCGCTATGTCAGCGGCGATGTCAAGCAC
TTTGAGAATGGAACCATCCTGAGTGCCAGCACCTCGGAATGGGCCATTAA
ACAGCAGTTGTACAAGACCAACGACACATCTGCGTTTGTAAATCTCGGCA
GAGTGCTCGCACAGCGCTGCCTGCAGTCTGGGATCACGGAAATGACCTGC
AACGTGGAGGCGGTACCGGGTAGCAAGCTGCAGAAGCTGCTTCAAACCAT
TCAGGATAATGGGGTGTCCTTCAAGGAACCCTCTCGCCTGCCCAACGAGC
AGCCCTGGGATGAGAAGAGGCATGAGAAGCCCTGGGAGGTGTCGGAAGAC
GCACTGGAAGCACCCAAATCAAAATAAAAGCTTTCTAGACCAT

BS14895.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL18-RA 561 CG12373-PA 1..561 17..577 2805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:34
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL18-RA 740 CG12373-RA 121..681 17..577 2805 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12756554..12757114 17..577 2805 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:10:32 has no hits.

BS14895.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:28 Download gff for BS14895.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL18-RA 1..561 17..577 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:12:22 Download gff for BS14895.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL18-RA 156..716 17..577 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:41 Download gff for BS14895.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL18-RA 121..679 17..575 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:28 Download gff for BS14895.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL18-RA 156..716 17..577 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:06 Download gff for BS14895.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL18-RA 121..679 17..575 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:06 Download gff for BS14895.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12756554..12757112 17..575 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:41 Download gff for BS14895.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8644059..8644617 17..575 100   Plus

BS14895.pep Sequence

Translation from 16 to 576

> BS14895.pep
MSRSARPLTSARVLHKIKELTTPQASTEYVINRNPRNLERLRIAYKPVGY
HLEKPGRSYWHTLEINTSGRYVSGDVKHFENGTILSASTSEWAIKQQLYK
TNDTSAFVNLGRVLAQRCLQSGITEMTCNVEAVPGSKLQKLLQTIQDNGV
SFKEPSRLPNEQPWDEKRHEKPWEVSEDALEAPKSK*

BS14895.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:46
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL18-PA 186 CG12373-PA 1..186 1..186 974 100 Plus