Clone Sequence Records
BS14896.3prime Sequence
733 bp (689 high quality bases) assembled on 2006-10-13
> BS14896.3prime
ATGGTCTAGAAAGCTTTCAAACATAATCCAACTGTATGTAGATCTGCTTG
ACGCCCACCGCCTCAAAGATCATCCGTGTGTGCGTCACCACGTACTTGGG
ATCGACGTTCTTGGACACCTCCAGCTTGAGTGCGCCCACATAGACATCGG
AGCAAAGGGTCCAGAAGTGCGGCTCCTGCACAGCGTAAACGCCAGCCAGG
CCGGTGACTTTCTGATAGCACTGCGGCAGCGATCGGTCCAGGTCGGCGGG
TTGTCGCTGCATCAGGATCATGATCGACTCCTTGATCAGACTCAGCACAC
TGAGCGCTATCAGCAAGGCTATGAAGATGGAGCAAATGGGGTCCGCTATC
ATCCAGCCGAACATGTGCATCAGCACCGCCGAGATGATCACGCCCACCGA
ACCCAAAGTGTCCGCCAGGATGTGCAGGAAGACGCCGCGCATGATCTGCG
AGTTGCTGCCCGACATGTCGCCGTGCGAGTGGCCATGGCTGTCGTGATCG
TGTGAGTGTCCATGGCCATTGTCCAAGGTGATGGCTTGGTGATTGTGATT
GCCGGCGTCCGTGTGGCCGTGCGAGTGCCCGTGCCCATGACCACCACCGT
GGGAGTGTCCGTGTCCACCGTGCGAGTGTCCATGTCCGCCGTGATTGAAG
GCATAGATGCCCACCAGGTTCACCAGCAGTCCCAGCACGGAGACGACAAA
CAGACGCTCGTGCTTGACCTCCGGCGGTTCGAT
BS14896.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6672-PA | 1101 | CG6672-RA | 385..1101 | 733..17 | 3585 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:19:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT86D-RA | 2003 | CG6672-RA | 727..1443 | 733..17 | 3585 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:19:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11212868..11213368 | 17..517 | 2505 | 100 | Plus |
3R | 32079331 | 3R | 11213456..11213673 | 516..733 | 1090 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:19:09 has no hits.
BS14896.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:41 Download gff for
BS14896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6672-PA | 385..1101 | 17..733 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:47 Download gff for
BS14896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6672-RA | 727..1446 | 13..733 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:24 Download gff for
BS14896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT86D-RA | 727..1446 | 13..733 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:24 Download gff for
BS14896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11212865..11213367 | 13..516 | 99 | <- | Plus |
3R | 11213457..11213673 | 517..733 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:47 Download gff for
BS14896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7038587..7039089 | 13..516 | 99 | <- | Plus |
arm_3R | 7039179..7039395 | 517..733 | 100 | | Plus |
BS14896.5prime Sequence
857 bp (770 high quality bases) assembled on 2006-10-13
> BS14896.5prime
GAAGTTATCAGTCGACATGATACCGCTGTCGCACAAGGACCGGAGCAGTC
TGGGCTACCGGATCCGGGAGAAGCTCAACAGCTGGAAACGACTCATCTTC
TCCGACCGCAACTCCCGGAATCTGTTCCTCTTTCTGCTGCTCAACCTGAG
CTTCGCCTTCGTGGAGCTCTTCTACGGCATTGTGACGAACAGTTTGGGCC
TGATCTCCGACTCATTCCACATGTTCTTCGACTGCACTGGCCTCTTGGCG
GGACTGGCCGCGTCGGTTATCACCAAGTGGAAGGCCAACGACAAGTTCTC
CTACGGCTATGTGCGCGCCGAGGTGCTGGCCGGCTTCGTGAATAGCCTGT
TCCTGTTGTTCATAGCCTTCTTCATTCTGTCGGAGGGCGTGGAGCGACTT
ATCGAACCGCCGGAGGTCAAGCACGAGCGTCTGTTTGTCGTCTCCGTGCT
GGGACTGCTGGTGAACCTGGTGGGCATCTATGCCTTCAATCACGGCGGAC
ATGGACACTCGCACGGTGGACACGGACACTCCCACGGTGGTGGTCATGGG
CACGGGCACTCGCACGGCCACACGGACGCCGGCAATCACAATCACCAAGC
CATCACCTTGGACAATGGCCATGGACACTCACACGATCACGACAGCCATG
GCCACTCGCACGGCGACATGTCGGGCAGCAACTCGCAGATCATGCGCGGC
GTCTTCCTGCACATCCTGGCGGACACTTTGGGTTCGGTGGGCGTGATCAT
CTCGGCGGTGCTGATGCACATGTTCGGCTGGATGATAGCGGACCCCATTT
GCTCCATCTTCCTAGCCTTGCTGATAGCGCTCAGTGTGCTGAGTCTGATC
AAGGAGT
BS14896.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6672-PA | 1101 | CG6672-RA | 1..841 | 17..857 | 4180 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:46:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT86D-RA | 2003 | CG6672-RA | 343..1183 | 17..857 | 4190 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:45:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11213456..11213877 | 618..197 | 2110 | 100 | Minus |
3R | 32079331 | 3R | 11213128..11213368 | 857..617 | 1190 | 99.6 | Minus |
3R | 32079331 | 3R | 11213947..11214128 | 198..17 | 910 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:45:57 has no hits.
BS14896.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:41 Download gff for
BS14896.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6672-PA | 1..841 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:25:16 Download gff for
BS14896.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6672-RA | 343..1183 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:30:49 Download gff for
BS14896.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT86D-RA | 343..1183 | 17..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:30:49 Download gff for
BS14896.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11213948..11214128 | 17..197 | 100 | | Minus |
3R | 11213128..11213367 | 618..857 | 99 | <- | Minus |
3R | 11213457..11213876 | 198..617 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:25:16 Download gff for
BS14896.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7038850..7039089 | 618..857 | 99 | <- | Minus |
arm_3R | 7039179..7039598 | 198..617 | 100 | <- | Minus |
arm_3R | 7039670..7039850 | 17..197 | 100 | | Minus |
BS14896.complete Sequence
1133 bp assembled on 2006-11-01
GenBank Submission: FJ637827
> BS14896.complete
GAAGTTATCAGTCGACATGATACCGCTGTCGCACAAGGACCGGAGCAGTC
TGGGCTACCGGATCCGGGAGAAGCTCAACAGCTGGAAACGACTCATCTTC
TCCGACCGCAACTCCCGGAATCTGTTCCTCTTTCTGCTGCTCAACCTGAG
CTTCGCCTTCGTGGAGCTCTTCTACGGCATTGTGACGAACAGTTTGGGCC
TGATCTCCGACTCATTCCACATGTTCTTCGACTGCACTGGCCTCTTGGCG
GGACTGGCCGCGTCGGTTATCACCAAGTGGAAGGCCAACGACAAGTTCTC
CTACGGCTATGTGCGCGCCGAGGTGCTGGCCGGCTTCGTGAATAGCCTGT
TCCTGTTGTTCATAGCCTTCTTCATTCTGTCGGAGGGCGTGGAGCGACTT
ATCGAACCGCCGGAGGTCAAGCACGAGCGTCTGTTTGTCGTCTCCGTGCT
GGGACTGCTGGTGAACCTGGTGGGCATCTATGCCTTCAATCACGGCGGAC
ATGGACACTCGCACGGTGGACACGGACACTCCCACGGTGGTGGTCATGGG
CACGGGCACTCGCACGGCCACACGGACGCCGGCAATCACAATCACCAAGC
CATCACCTTGGACAATGGCCATGGACACTCACACGATCACGACAGCCATG
GCCACTCGCACGGCGACATGTCGGGCAGCAACTCGCAGATCATGCGCGGC
GTCTTCCTGCACATCCTGGCGGACACTTTGGGTTCGGTGGGCGTGATCAT
CTCGGCGGTGCTGATGCACATGTTCGGCTGGATGATAGCGGACCCCATTT
GCTCCATCTTCATAGCCTTGCTGATAGCGCTCAGTGTGCTGAGTCTGATC
AAGGAGTCGATCATGATCCTGATGCAGCGACAACCCGCCGACCTGGACCG
ATCGCTGCCGCAGTGCTATCAGAAAGTCACCGGCCTGGCTGGCGTTTACG
CTGTGCAGGAGCCGCACTTCTGGACCCTTTGCTCCGATGTCTATGTGGGC
GCACTCAAGCTGGAGGTGTCCAAGAACGTCGATCCCAAGTACGTGGTGAC
GCACACACGGATGATCTTTGAGGCGGTGGGCGTCAAGCAGATCTACATAC
AGTTGGATTATGTTTGAAAGCTTTCTAGACCAT
BS14896.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:04:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT86D-RA | 1101 | CG6672-PA | 1..1101 | 17..1117 | 5505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:04:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT86D-RA | 2003 | CG6672-RA | 343..1443 | 17..1117 | 5505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:04:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11212868..11213368 | 1117..617 | 2505 | 100 | Minus |
3R | 32079331 | 3R | 11213456..11213877 | 618..197 | 2110 | 100 | Minus |
3R | 32079331 | 3R | 11213947..11214128 | 198..17 | 910 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:04:49 has no hits.
BS14896.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:31 Download gff for
BS14896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6672-RA | 1..1101 | 17..1117 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:15 Download gff for
BS14896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6672-RA | 321..1424 | 17..1121 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:46 Download gff for
BS14896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6672-RA | 343..1442 | 17..1116 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:31 Download gff for
BS14896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6672-RA | 321..1424 | 17..1121 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:26 Download gff for
BS14896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT86D-RA | 343..1442 | 17..1116 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:26 Download gff for
BS14896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11212869..11213367 | 618..1116 | 100 | <- | Minus |
3R | 11213457..11213876 | 198..617 | 100 | <- | Minus |
3R | 11213948..11214128 | 17..197 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:46 Download gff for
BS14896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7039670..7039850 | 17..197 | 100 | | Minus |
arm_3R | 7038591..7039089 | 618..1116 | 100 | <- | Minus |
arm_3R | 7039179..7039598 | 198..617 | 100 | <- | Minus |
BS14896.pep Sequence
Translation from 16 to 1116
> BS14896.pep
MIPLSHKDRSSLGYRIREKLNSWKRLIFSDRNSRNLFLFLLLNLSFAFVE
LFYGIVTNSLGLISDSFHMFFDCTGLLAGLAASVITKWKANDKFSYGYVR
AEVLAGFVNSLFLLFIAFFILSEGVERLIEPPEVKHERLFVVSVLGLLVN
LVGIYAFNHGGHGHSHGGHGHSHGGGHGHGHSHGHTDAGNHNHQAITLDN
GHGHSHDHDSHGHSHGDMSGSNSQIMRGVFLHILADTLGSVGVIISAVLM
HMFGWMIADPICSIFIALLIALSVLSLIKESIMILMQRQPADLDRSLPQC
YQKVTGLAGVYAVQEPHFWTLCSDVYVGALKLEVSKNVDPKYVVTHTRMI
FEAVGVKQIYIQLDYV*
BS14896.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT86D-PA | 366 | CG6672-PA | 1..366 | 1..366 | 1926 | 100 | Plus |
ZnT63C-PG | 449 | CG17723-PG | 11..338 | 36..365 | 434 | 34.7 | Plus |
ZnT63C-PE | 449 | CG17723-PE | 11..338 | 36..365 | 434 | 34.7 | Plus |
ZnT63C-PD | 449 | CG17723-PD | 11..338 | 36..365 | 434 | 34.7 | Plus |
ZnT63C-PC | 449 | CG17723-PC | 11..338 | 36..365 | 434 | 34.7 | Plus |