Clone BS14896 Report

Search the DGRC for BS14896

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:148
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptZnT86D-RA
Protein status:BS14896.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14896.3prime Sequence

733 bp (689 high quality bases) assembled on 2006-10-13

> BS14896.3prime
ATGGTCTAGAAAGCTTTCAAACATAATCCAACTGTATGTAGATCTGCTTG
ACGCCCACCGCCTCAAAGATCATCCGTGTGTGCGTCACCACGTACTTGGG
ATCGACGTTCTTGGACACCTCCAGCTTGAGTGCGCCCACATAGACATCGG
AGCAAAGGGTCCAGAAGTGCGGCTCCTGCACAGCGTAAACGCCAGCCAGG
CCGGTGACTTTCTGATAGCACTGCGGCAGCGATCGGTCCAGGTCGGCGGG
TTGTCGCTGCATCAGGATCATGATCGACTCCTTGATCAGACTCAGCACAC
TGAGCGCTATCAGCAAGGCTATGAAGATGGAGCAAATGGGGTCCGCTATC
ATCCAGCCGAACATGTGCATCAGCACCGCCGAGATGATCACGCCCACCGA
ACCCAAAGTGTCCGCCAGGATGTGCAGGAAGACGCCGCGCATGATCTGCG
AGTTGCTGCCCGACATGTCGCCGTGCGAGTGGCCATGGCTGTCGTGATCG
TGTGAGTGTCCATGGCCATTGTCCAAGGTGATGGCTTGGTGATTGTGATT
GCCGGCGTCCGTGTGGCCGTGCGAGTGCCCGTGCCCATGACCACCACCGT
GGGAGTGTCCGTGTCCACCGTGCGAGTGTCCATGTCCGCCGTGATTGAAG
GCATAGATGCCCACCAGGTTCACCAGCAGTCCCAGCACGGAGACGACAAA
CAGACGCTCGTGCTTGACCTCCGGCGGTTCGAT

BS14896.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG6672-PA 1101 CG6672-RA 385..1101 733..17 3585 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:19:13
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT86D-RA 2003 CG6672-RA 727..1443 733..17 3585 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:19:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11212868..11213368 17..517 2505 100 Plus
3R 32079331 3R 11213456..11213673 516..733 1090 100 Plus
Blast to na_te.dros performed on 2015-02-08 12:19:09 has no hits.

BS14896.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:41 Download gff for BS14896.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6672-PA 385..1101 17..733 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:47 Download gff for BS14896.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6672-RA 727..1446 13..733 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:24 Download gff for BS14896.3prime
Subject Subject Range Query Range Percent Splice Strand
ZnT86D-RA 727..1446 13..733 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:24 Download gff for BS14896.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11212865..11213367 13..516 99 <- Plus
3R 11213457..11213673 517..733 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:47 Download gff for BS14896.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7038587..7039089 13..516 99 <- Plus
arm_3R 7039179..7039395 517..733 100   Plus

BS14896.5prime Sequence

857 bp (770 high quality bases) assembled on 2006-10-13

> BS14896.5prime
GAAGTTATCAGTCGACATGATACCGCTGTCGCACAAGGACCGGAGCAGTC
TGGGCTACCGGATCCGGGAGAAGCTCAACAGCTGGAAACGACTCATCTTC
TCCGACCGCAACTCCCGGAATCTGTTCCTCTTTCTGCTGCTCAACCTGAG
CTTCGCCTTCGTGGAGCTCTTCTACGGCATTGTGACGAACAGTTTGGGCC
TGATCTCCGACTCATTCCACATGTTCTTCGACTGCACTGGCCTCTTGGCG
GGACTGGCCGCGTCGGTTATCACCAAGTGGAAGGCCAACGACAAGTTCTC
CTACGGCTATGTGCGCGCCGAGGTGCTGGCCGGCTTCGTGAATAGCCTGT
TCCTGTTGTTCATAGCCTTCTTCATTCTGTCGGAGGGCGTGGAGCGACTT
ATCGAACCGCCGGAGGTCAAGCACGAGCGTCTGTTTGTCGTCTCCGTGCT
GGGACTGCTGGTGAACCTGGTGGGCATCTATGCCTTCAATCACGGCGGAC
ATGGACACTCGCACGGTGGACACGGACACTCCCACGGTGGTGGTCATGGG
CACGGGCACTCGCACGGCCACACGGACGCCGGCAATCACAATCACCAAGC
CATCACCTTGGACAATGGCCATGGACACTCACACGATCACGACAGCCATG
GCCACTCGCACGGCGACATGTCGGGCAGCAACTCGCAGATCATGCGCGGC
GTCTTCCTGCACATCCTGGCGGACACTTTGGGTTCGGTGGGCGTGATCAT
CTCGGCGGTGCTGATGCACATGTTCGGCTGGATGATAGCGGACCCCATTT
GCTCCATCTTCCTAGCCTTGCTGATAGCGCTCAGTGTGCTGAGTCTGATC
AAGGAGT

BS14896.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6672-PA 1101 CG6672-RA 1..841 17..857 4180 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT86D-RA 2003 CG6672-RA 343..1183 17..857 4190 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:45:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11213456..11213877 618..197 2110 100 Minus
3R 32079331 3R 11213128..11213368 857..617 1190 99.6 Minus
3R 32079331 3R 11213947..11214128 198..17 910 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:45:57 has no hits.

BS14896.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:41 Download gff for BS14896.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6672-PA 1..841 17..857 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:25:16 Download gff for BS14896.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6672-RA 343..1183 17..857 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:30:49 Download gff for BS14896.5prime
Subject Subject Range Query Range Percent Splice Strand
ZnT86D-RA 343..1183 17..857 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:30:49 Download gff for BS14896.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11213948..11214128 17..197 100   Minus
3R 11213128..11213367 618..857 99 <- Minus
3R 11213457..11213876 198..617 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:25:16 Download gff for BS14896.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7038850..7039089 618..857 99 <- Minus
arm_3R 7039179..7039598 198..617 100 <- Minus
arm_3R 7039670..7039850 17..197 100   Minus

BS14896.complete Sequence

1133 bp assembled on 2006-11-01

GenBank Submission: FJ637827

> BS14896.complete
GAAGTTATCAGTCGACATGATACCGCTGTCGCACAAGGACCGGAGCAGTC
TGGGCTACCGGATCCGGGAGAAGCTCAACAGCTGGAAACGACTCATCTTC
TCCGACCGCAACTCCCGGAATCTGTTCCTCTTTCTGCTGCTCAACCTGAG
CTTCGCCTTCGTGGAGCTCTTCTACGGCATTGTGACGAACAGTTTGGGCC
TGATCTCCGACTCATTCCACATGTTCTTCGACTGCACTGGCCTCTTGGCG
GGACTGGCCGCGTCGGTTATCACCAAGTGGAAGGCCAACGACAAGTTCTC
CTACGGCTATGTGCGCGCCGAGGTGCTGGCCGGCTTCGTGAATAGCCTGT
TCCTGTTGTTCATAGCCTTCTTCATTCTGTCGGAGGGCGTGGAGCGACTT
ATCGAACCGCCGGAGGTCAAGCACGAGCGTCTGTTTGTCGTCTCCGTGCT
GGGACTGCTGGTGAACCTGGTGGGCATCTATGCCTTCAATCACGGCGGAC
ATGGACACTCGCACGGTGGACACGGACACTCCCACGGTGGTGGTCATGGG
CACGGGCACTCGCACGGCCACACGGACGCCGGCAATCACAATCACCAAGC
CATCACCTTGGACAATGGCCATGGACACTCACACGATCACGACAGCCATG
GCCACTCGCACGGCGACATGTCGGGCAGCAACTCGCAGATCATGCGCGGC
GTCTTCCTGCACATCCTGGCGGACACTTTGGGTTCGGTGGGCGTGATCAT
CTCGGCGGTGCTGATGCACATGTTCGGCTGGATGATAGCGGACCCCATTT
GCTCCATCTTCATAGCCTTGCTGATAGCGCTCAGTGTGCTGAGTCTGATC
AAGGAGTCGATCATGATCCTGATGCAGCGACAACCCGCCGACCTGGACCG
ATCGCTGCCGCAGTGCTATCAGAAAGTCACCGGCCTGGCTGGCGTTTACG
CTGTGCAGGAGCCGCACTTCTGGACCCTTTGCTCCGATGTCTATGTGGGC
GCACTCAAGCTGGAGGTGTCCAAGAACGTCGATCCCAAGTACGTGGTGAC
GCACACACGGATGATCTTTGAGGCGGTGGGCGTCAAGCAGATCTACATAC
AGTTGGATTATGTTTGAAAGCTTTCTAGACCAT

BS14896.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT86D-RA 1101 CG6672-PA 1..1101 17..1117 5505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT86D-RA 2003 CG6672-RA 343..1443 17..1117 5505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:04:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11212868..11213368 1117..617 2505 100 Minus
3R 32079331 3R 11213456..11213877 618..197 2110 100 Minus
3R 32079331 3R 11213947..11214128 198..17 910 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:04:49 has no hits.

BS14896.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:31 Download gff for BS14896.complete
Subject Subject Range Query Range Percent Splice Strand
CG6672-RA 1..1101 17..1117 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:15 Download gff for BS14896.complete
Subject Subject Range Query Range Percent Splice Strand
CG6672-RA 321..1424 17..1121 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:46 Download gff for BS14896.complete
Subject Subject Range Query Range Percent Splice Strand
CG6672-RA 343..1442 17..1116 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:31 Download gff for BS14896.complete
Subject Subject Range Query Range Percent Splice Strand
CG6672-RA 321..1424 17..1121 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:26 Download gff for BS14896.complete
Subject Subject Range Query Range Percent Splice Strand
ZnT86D-RA 343..1442 17..1116 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:26 Download gff for BS14896.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11212869..11213367 618..1116 100 <- Minus
3R 11213457..11213876 198..617 100 <- Minus
3R 11213948..11214128 17..197 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:46 Download gff for BS14896.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7039670..7039850 17..197 100   Minus
arm_3R 7038591..7039089 618..1116 100 <- Minus
arm_3R 7039179..7039598 198..617 100 <- Minus

BS14896.pep Sequence

Translation from 16 to 1116

> BS14896.pep
MIPLSHKDRSSLGYRIREKLNSWKRLIFSDRNSRNLFLFLLLNLSFAFVE
LFYGIVTNSLGLISDSFHMFFDCTGLLAGLAASVITKWKANDKFSYGYVR
AEVLAGFVNSLFLLFIAFFILSEGVERLIEPPEVKHERLFVVSVLGLLVN
LVGIYAFNHGGHGHSHGGHGHSHGGGHGHGHSHGHTDAGNHNHQAITLDN
GHGHSHDHDSHGHSHGDMSGSNSQIMRGVFLHILADTLGSVGVIISAVLM
HMFGWMIADPICSIFIALLIALSVLSLIKESIMILMQRQPADLDRSLPQC
YQKVTGLAGVYAVQEPHFWTLCSDVYVGALKLEVSKNVDPKYVVTHTRMI
FEAVGVKQIYIQLDYV*

BS14896.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:44
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT86D-PA 366 CG6672-PA 1..366 1..366 1926 100 Plus
ZnT63C-PG 449 CG17723-PG 11..338 36..365 434 34.7 Plus
ZnT63C-PE 449 CG17723-PE 11..338 36..365 434 34.7 Plus
ZnT63C-PD 449 CG17723-PD 11..338 36..365 434 34.7 Plus
ZnT63C-PC 449 CG17723-PC 11..338 36..365 434 34.7 Plus