Clone BS14904 Report

Search the DGRC for BS14904

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:149
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG1545-RB
Protein status:BS14904.pep: gold
Sequenced Size:16

Clone Sequence Records

BS14904.5prime Sequence

516 bp (516 high quality bases) assembled on 2006-10-13

> BS14904.5prime
GAAGTTATCAGTCGACATGGCAGGCTCAGGTTCCGAATCAAATTTATCTA
CAAATTCTGGCCCAGAATTCGATTCTGATTTTGGCGGCGGCGGTTGTGTT
TACGATTGTTGTGCAATGGCCAAATCGATAACAGAAACGAGAACCACAAA
TTCTACGGCGGCAACCATAACTGCAATACACACTCGCAAAAGCACCACAA
CAATCGCATTTGTTCTGCTGTTAATCCTCTGCTGTTTATGTGATTACAAC
CATGGAAGCTGGGCATCGCAATGCTGGAAAAAGCACAATTCCGGCTCGAT
CCAAACGCCAGATGGAGAATTTAAGCGACCCTTTGGCATACTCTGCACAT
ATCGCTGCTTTCTCTGGTTTCCGCCAATTTATCCGTACTGTGAATTCATA
TTCGATCTGCGCTTATCGAGGCACTTCACATCCTTTCCGGACTGCTACGA
GATTCGCTGCAACGAGACCTTCTCCTTTTTCGGCAAGGAGCCCCATTACT
GAAAGCTTTCTAGACC

BS14904.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG1545-PA 486 CG1545-RA 1..486 17..502 2430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG1545-RB 717 CG1545-RB 98..585 15..502 2440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:31:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11059279..11059522 258..15 1220 100 Minus
X 23542271 X 11057677..11057800 502..379 620 100 Minus
X 23542271 X 11058365..11058485 378..258 605 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:31:18 has no hits.

BS14904.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:44 Download gff for BS14904.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1545-PA 1..486 17..502 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:26:34 Download gff for BS14904.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1545-RB 98..588 15..507 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:58 Download gff for BS14904.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1545-RB 98..588 15..507 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:58 Download gff for BS14904.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11057674..11057800 379..507 97 <- Minus
X 11058365..11058485 258..378 100 <- Minus
X 11059280..11059522 15..257 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:26:34 Download gff for BS14904.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10951707..10951833 379..507 97 <- Minus
arm_X 10952398..10952518 258..378 100 <- Minus
arm_X 10953313..10953555 15..257 100   Minus

BS14904.3prime Sequence

516 bp (516 high quality bases) assembled on 2006-10-13

> BS14904.3prime
ATGGTCTAGAAAGCTTTCAGTAATGGGGCTCCTTGCCGAAAAAGGAGAAG
GTCTCGTTGCAGCGAATCTCGTAGCAGTCCGGAAAGGATGTGAAGTGCCT
CGATAAGCGCAGATCGAATATGAATTCACAGTACGGATAAATTGGCGGAA
ACCAGAGAAAGCAGCGATATGTGCAGAGTATGCCAAAGGGTCGCTTAAAT
TCTCCATCTGGCGTTTGGATCGAGCCGGAATTGTGCTTTTTCCAGCATTG
CGATGCCCAGCTTCCATGGTTGTAATCACATAAACAGCAGAGGATTAACA
GCAGAACAAATGCGATTGTTGTGGTGCTTTTGCGAGTGTGTATTGCAGTT
ATGGTTGCCGCCGTAGAATTTGTGGTTCTCGTTTCTGTTATCGATTTGGC
CATTGCACAACAATCGTAAACACAACCGCCGCCGCCAAAATCAGAATCGA
ATTCTGGGCCAGAATTTGTAGATAAATTTGATTCGGAACCTGAGCCTGCC
ATGTCGACTGATAACT

BS14904.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG1545-PA 486 CG1545-RA 1..486 502..17 2430 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:15:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG1545-RB 717 CG1545-RB 98..585 504..17 2440 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:15:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11059279..11059522 261..504 1220 100 Plus
X 23542271 X 11057677..11057800 17..140 620 100 Plus
X 23542271 X 11058365..11058485 141..261 605 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:15:38 has no hits.

BS14904.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:44 Download gff for BS14904.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1545-PA 1..486 17..502 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:17:23 Download gff for BS14904.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1545-RB 98..588 12..504 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:53 Download gff for BS14904.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1545-RB 98..588 12..504 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:53 Download gff for BS14904.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11059280..11059522 262..504 100   Plus
X 11057674..11057800 12..140 97 <- Plus
X 11058365..11058485 141..261 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:17:23 Download gff for BS14904.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10951707..10951833 12..140 97 <- Plus
arm_X 10952398..10952518 141..261 100 <- Plus
arm_X 10953313..10953555 262..504 100   Plus

BS14904.complete Sequence

518 bp assembled on 2006-11-01

GenBank Submission: FJ637828

> BS14904.complete
GAAGTTATCAGTCGACATGGCAGGCTCAGGTTCCGAATCAAATTTATCTA
CAAATTCTGGCCCAGAATTCGATTCTGATTTTGGCGGCGGCGGTTGTGTT
TACGATTGTTGTGCAATGGCCAAATCGATAACAGAAACGAGAACCACAAA
TTCTACGGCGGCAACCATAACTGCAATACACACTCGCAAAAGCACCACAA
CAATCGCATTTGTTCTGCTGTTAATCCTCTGCTGTTTATGTGATTACAAC
CATGGAAGCTGGGCATCGCAATGCTGGAAAAAGCACAATTCCGGCTCGAT
CCAAACGCCAGATGGAGAATTTAAGCGACCCTTTGGCATACTCTGCACAT
ATCGCTGCTTTCTCTGGTTTCCGCCAATTTATCCGTACTGTGAATTCATA
TTCGATCTGCGCTTATCGAGGCACTTCACATCCTTTCCGGACTGCTACGA
GATTCGCTGCAACGAGACCTTCTCCTTTTTCGGCAAGGAGCCCCATTACT
GAAAGCTTTCTAGACCAT

BS14904.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:07:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG1545-RB 387 CG1545-PB 1..387 116..502 1935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG1545-RB 717 CG1545-RB 98..585 15..502 2440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11059279..11059522 258..15 1220 100 Minus
X 23542271 X 11057677..11057800 502..379 620 100 Minus
X 23542271 X 11058365..11058485 378..258 605 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:07:18 has no hits.

BS14904.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:08 Download gff for BS14904.complete
Subject Subject Range Query Range Percent Splice Strand
CG1545-RB 1..387 116..502 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:57 Download gff for BS14904.complete
Subject Subject Range Query Range Percent Splice Strand
CG1545-RB 98..588 15..507 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:33 Download gff for BS14904.complete
Subject Subject Range Query Range Percent Splice Strand
CG1545-RB 100..584 17..501 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:09 Download gff for BS14904.complete
Subject Subject Range Query Range Percent Splice Strand
CG1545-RB 98..588 15..507 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:59 Download gff for BS14904.complete
Subject Subject Range Query Range Percent Splice Strand
CG1545-RB 100..584 17..501 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:59 Download gff for BS14904.complete
Subject Subject Range Query Range Percent Splice Strand
X 11057678..11057800 379..501 100 <- Minus
X 11058365..11058485 258..378 100 <- Minus
X 11059280..11059520 17..257 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:33 Download gff for BS14904.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10952398..10952518 258..378 100 <- Minus
arm_X 10953313..10953553 17..257 100   Minus
arm_X 10951711..10951833 379..501 100 <- Minus

BS14904.pep Sequence

Translation from 16 to 501

> BS14904.pep
MAGSGSESNLSTNSGPEFDSDFGGGGCVYDCCAMAKSITETRTTNSTAAT
ITAIHTRKSTTTIAFVLLLILCCLCDYNHGSWASQCWKKHNSGSIQTPDG
EFKRPFGILCTYRCFLWFPPIYPYCEFIFDLRLSRHFTSFPDCYEIRCNE
TFSFFGKEPHY*

BS14904.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG1545-PB 128 CG1545-PB 1..128 34..161 724 100 Plus
CG1537-PA 135 CG1537-PA 59..128 84..148 148 37.1 Plus