Clone Sequence Records
BS14904.5prime Sequence
516 bp (516 high quality bases) assembled on 2006-10-13
> BS14904.5prime
GAAGTTATCAGTCGACATGGCAGGCTCAGGTTCCGAATCAAATTTATCTA
CAAATTCTGGCCCAGAATTCGATTCTGATTTTGGCGGCGGCGGTTGTGTT
TACGATTGTTGTGCAATGGCCAAATCGATAACAGAAACGAGAACCACAAA
TTCTACGGCGGCAACCATAACTGCAATACACACTCGCAAAAGCACCACAA
CAATCGCATTTGTTCTGCTGTTAATCCTCTGCTGTTTATGTGATTACAAC
CATGGAAGCTGGGCATCGCAATGCTGGAAAAAGCACAATTCCGGCTCGAT
CCAAACGCCAGATGGAGAATTTAAGCGACCCTTTGGCATACTCTGCACAT
ATCGCTGCTTTCTCTGGTTTCCGCCAATTTATCCGTACTGTGAATTCATA
TTCGATCTGCGCTTATCGAGGCACTTCACATCCTTTCCGGACTGCTACGA
GATTCGCTGCAACGAGACCTTCTCCTTTTTCGGCAAGGAGCCCCATTACT
GAAAGCTTTCTAGACC
BS14904.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1545-PA | 486 | CG1545-RA | 1..486 | 17..502 | 2430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:31:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1545-RB | 717 | CG1545-RB | 98..585 | 15..502 | 2440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:31:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11059279..11059522 | 258..15 | 1220 | 100 | Minus |
X | 23542271 | X | 11057677..11057800 | 502..379 | 620 | 100 | Minus |
X | 23542271 | X | 11058365..11058485 | 378..258 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:31:18 has no hits.
BS14904.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:44 Download gff for
BS14904.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1545-PA | 1..486 | 17..502 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:26:34 Download gff for
BS14904.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1545-RB | 98..588 | 15..507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:58 Download gff for
BS14904.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1545-RB | 98..588 | 15..507 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:58 Download gff for
BS14904.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11057674..11057800 | 379..507 | 97 | <- | Minus |
X | 11058365..11058485 | 258..378 | 100 | <- | Minus |
X | 11059280..11059522 | 15..257 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:26:34 Download gff for
BS14904.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10951707..10951833 | 379..507 | 97 | <- | Minus |
arm_X | 10952398..10952518 | 258..378 | 100 | <- | Minus |
arm_X | 10953313..10953555 | 15..257 | 100 | | Minus |
BS14904.3prime Sequence
516 bp (516 high quality bases) assembled on 2006-10-13
> BS14904.3prime
ATGGTCTAGAAAGCTTTCAGTAATGGGGCTCCTTGCCGAAAAAGGAGAAG
GTCTCGTTGCAGCGAATCTCGTAGCAGTCCGGAAAGGATGTGAAGTGCCT
CGATAAGCGCAGATCGAATATGAATTCACAGTACGGATAAATTGGCGGAA
ACCAGAGAAAGCAGCGATATGTGCAGAGTATGCCAAAGGGTCGCTTAAAT
TCTCCATCTGGCGTTTGGATCGAGCCGGAATTGTGCTTTTTCCAGCATTG
CGATGCCCAGCTTCCATGGTTGTAATCACATAAACAGCAGAGGATTAACA
GCAGAACAAATGCGATTGTTGTGGTGCTTTTGCGAGTGTGTATTGCAGTT
ATGGTTGCCGCCGTAGAATTTGTGGTTCTCGTTTCTGTTATCGATTTGGC
CATTGCACAACAATCGTAAACACAACCGCCGCCGCCAAAATCAGAATCGA
ATTCTGGGCCAGAATTTGTAGATAAATTTGATTCGGAACCTGAGCCTGCC
ATGTCGACTGATAACT
BS14904.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1545-PA | 486 | CG1545-RA | 1..486 | 502..17 | 2430 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:15:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1545-RB | 717 | CG1545-RB | 98..585 | 504..17 | 2440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:15:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11059279..11059522 | 261..504 | 1220 | 100 | Plus |
X | 23542271 | X | 11057677..11057800 | 17..140 | 620 | 100 | Plus |
X | 23542271 | X | 11058365..11058485 | 141..261 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:15:38 has no hits.
BS14904.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:44 Download gff for
BS14904.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1545-PA | 1..486 | 17..502 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:17:23 Download gff for
BS14904.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1545-RB | 98..588 | 12..504 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:53 Download gff for
BS14904.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1545-RB | 98..588 | 12..504 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:53 Download gff for
BS14904.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11059280..11059522 | 262..504 | 100 | | Plus |
X | 11057674..11057800 | 12..140 | 97 | <- | Plus |
X | 11058365..11058485 | 141..261 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:17:23 Download gff for
BS14904.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10951707..10951833 | 12..140 | 97 | <- | Plus |
arm_X | 10952398..10952518 | 141..261 | 100 | <- | Plus |
arm_X | 10953313..10953555 | 262..504 | 100 | | Plus |
BS14904.complete Sequence
518 bp assembled on 2006-11-01
GenBank Submission: FJ637828
> BS14904.complete
GAAGTTATCAGTCGACATGGCAGGCTCAGGTTCCGAATCAAATTTATCTA
CAAATTCTGGCCCAGAATTCGATTCTGATTTTGGCGGCGGCGGTTGTGTT
TACGATTGTTGTGCAATGGCCAAATCGATAACAGAAACGAGAACCACAAA
TTCTACGGCGGCAACCATAACTGCAATACACACTCGCAAAAGCACCACAA
CAATCGCATTTGTTCTGCTGTTAATCCTCTGCTGTTTATGTGATTACAAC
CATGGAAGCTGGGCATCGCAATGCTGGAAAAAGCACAATTCCGGCTCGAT
CCAAACGCCAGATGGAGAATTTAAGCGACCCTTTGGCATACTCTGCACAT
ATCGCTGCTTTCTCTGGTTTCCGCCAATTTATCCGTACTGTGAATTCATA
TTCGATCTGCGCTTATCGAGGCACTTCACATCCTTTCCGGACTGCTACGA
GATTCGCTGCAACGAGACCTTCTCCTTTTTCGGCAAGGAGCCCCATTACT
GAAAGCTTTCTAGACCAT
BS14904.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:07:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1545-RB | 387 | CG1545-PB | 1..387 | 116..502 | 1935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1545-RB | 717 | CG1545-RB | 98..585 | 15..502 | 2440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11059279..11059522 | 258..15 | 1220 | 100 | Minus |
X | 23542271 | X | 11057677..11057800 | 502..379 | 620 | 100 | Minus |
X | 23542271 | X | 11058365..11058485 | 378..258 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:07:18 has no hits.
BS14904.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:08 Download gff for
BS14904.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1545-RB | 1..387 | 116..502 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:57 Download gff for
BS14904.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1545-RB | 98..588 | 15..507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:33 Download gff for
BS14904.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1545-RB | 100..584 | 17..501 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:09 Download gff for
BS14904.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1545-RB | 98..588 | 15..507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:59 Download gff for
BS14904.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1545-RB | 100..584 | 17..501 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:59 Download gff for
BS14904.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11057678..11057800 | 379..501 | 100 | <- | Minus |
X | 11058365..11058485 | 258..378 | 100 | <- | Minus |
X | 11059280..11059520 | 17..257 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:33 Download gff for
BS14904.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10952398..10952518 | 258..378 | 100 | <- | Minus |
arm_X | 10953313..10953553 | 17..257 | 100 | | Minus |
arm_X | 10951711..10951833 | 379..501 | 100 | <- | Minus |
BS14904.pep Sequence
Translation from 16 to 501
> BS14904.pep
MAGSGSESNLSTNSGPEFDSDFGGGGCVYDCCAMAKSITETRTTNSTAAT
ITAIHTRKSTTTIAFVLLLILCCLCDYNHGSWASQCWKKHNSGSIQTPDG
EFKRPFGILCTYRCFLWFPPIYPYCEFIFDLRLSRHFTSFPDCYEIRCNE
TFSFFGKEPHY*
BS14904.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1545-PB | 128 | CG1545-PB | 1..128 | 34..161 | 724 | 100 | Plus |
CG1537-PA | 135 | CG1537-PA | 59..128 | 84..148 | 148 | 37.1 | Plus |