Clone Sequence Records
BS14906.3prime Sequence
811 bp (690 high quality bases) assembled on 2006-10-13
> BS14906.3prime
ATGGTCTAGAAAGCTTTTATTCATCGCCGCCACCCTCTTCGTCTTCATCG
AATTCGCCCTCCTCATCGGCAGTCGCCTCCTGGTACTGCTGATATTCAGA
AACCAAGTCGTTCATGTTGCTCTCGGCCTCTGTGAATTCCATTTCGTCCA
TTCCCTCGCCGGTGTACCAATGCAAGAAGGCCTTCCTTCGGAACATGGCG
GTGAACTGCTCCGAAACCCGTTTGAATAGCTCCTGAATGGCGGTGGAGTT
GCCAATGAAGGTGGCCGACATCTTGAGACCTCTGGGCGGAATATCGCACA
CCGCTGTCTTGCAGTTATTCGGGATCCATTCCACGAAGAAGCTGCTGTTC
TTGTTCTGAATGTTGAGCATCTGCTCGTCCACCTCCTTCATGGACATGCG
GCCACGGAAGATGGCGGCGACGGTCAGATAGCGACCATGTCGCGGATCGC
ACGCAGCCATCATGTTCTTGGCATCGAACATCTGCTGGGTCAGCTCCGGA
ACGGTAAGGGCCCGGTATTGTTGCGATCCTCGCGAGGTGAGCGGTGCGAA
TCCGGGCATGAAGAAGTGCAGCCGGGGGAAGGGTACCATGTTCACGGCCA
GCTTGCGAAGATCAGCGTTCAGCTGGCCAGGGAAGCGCAGGCAGGTCGTC
ACACCAGACATGGTGGCCGAAACCAGATGGTTCAGGTCACCGTAGGTGGG
CGTGGTCAGCTTCAGTGTGCGGAAGCAGATGTCATACAACGCCTCGTTGT
CGATGCAGTACGTCTCATCGGTGTTCTCCACCAGCTGATGCACACTCAGG
GTGGCATTGTA
BS14906.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9359-PA | 1341 | betaTub85D-RA | 547..1341 | 811..17 | 3975 | 100 | Minus |
| CG3401-PA | 1365 | betaTub60D-RA | 712..920 | 664..456 | 470 | 88.9 | Minus |
| CG4869-PA | 1569 | betaTub97EF-RA | 901..1013 | 652..540 | 415 | 94.6 | Minus |
| CG9277-PB | 1344 | betaTub56D-RB | 712..902 | 646..456 | 405 | 88.4 | Minus |
| CG9277-PA | 1371 | betaTub56D-RA | 739..929 | 646..456 | 405 | 88.4 | Minus |
| CG9277-PC | 1128 | betaTub56D-RC | 496..686 | 646..456 | 405 | 88.4 | Minus |
| CG9277-PD | 1128 | betaTub56D-RD | 496..686 | 646..456 | 405 | 88.4 | Minus |
| CG9277-PB | 1344 | betaTub56D-RB | 934..1037 | 424..321 | 320 | 92.3 | Minus |
| CG9277-PA | 1371 | betaTub56D-RA | 961..1064 | 424..321 | 320 | 92.3 | Minus |
| CG9277-PC | 1128 | betaTub56D-RC | 718..821 | 424..321 | 320 | 92.3 | Minus |
| CG9277-PD | 1128 | betaTub56D-RD | 718..821 | 424..321 | 320 | 92.3 | Minus |
| CG9277-PB | 1344 | betaTub56D-RB | 1174..1250 | 184..108 | 260 | 93.5 | Minus |
| CG9277-PA | 1371 | betaTub56D-RA | 1201..1277 | 184..108 | 260 | 93.5 | Minus |
| CG9277-PC | 1128 | betaTub56D-RC | 958..1034 | 184..108 | 260 | 93.5 | Minus |
| CG9277-PD | 1128 | betaTub56D-RD | 958..1034 | 184..108 | 260 | 93.5 | Minus |
| CG4869-PA | 1569 | betaTub97EF-RA | 1369..1445 | 184..108 | 260 | 93.5 | Minus |
| CG3401-PA | 1365 | betaTub60D-RA | 1192..1301 | 184..75 | 250 | 89 | Minus |
| CG3401-PA | 1365 | betaTub60D-RA | 589..656 | 787..720 | 240 | 94.1 | Minus |
| CG3401-PA | 1365 | betaTub60D-RA | 958..1010 | 418..366 | 215 | 96.2 | Minus |
| CG4869-PA | 1569 | betaTub97EF-RA | 752..802 | 774..724 | 205 | 96 | Minus |
| CG4869-PA | 1569 | betaTub97EF-RA | 1276..1323 | 277..230 | 165 | 93.7 | Minus |
| CG9277-PB | 1344 | betaTub56D-RB | 628..683 | 730..675 | 155 | 91 | Minus |
| CG9277-PA | 1371 | betaTub56D-RA | 655..710 | 730..675 | 155 | 91 | Minus |
| CG9277-PC | 1128 | betaTub56D-RC | 412..467 | 730..675 | 155 | 91 | Minus |
| CG9277-PD | 1128 | betaTub56D-RD | 412..467 | 730..675 | 155 | 91 | Minus |
| CG9277-PB | 1344 | betaTub56D-RB | 1057..1136 | 301..222 | 150 | 87.5 | Minus |
| CG9277-PA | 1371 | betaTub56D-RA | 1084..1163 | 301..222 | 150 | 87.5 | Minus |
| CG9277-PC | 1128 | betaTub56D-RC | 841..920 | 301..222 | 150 | 87.5 | Minus |
| CG9277-PD | 1128 | betaTub56D-RD | 841..920 | 301..222 | 150 | 87.5 | Minus |
| CG4869-PA | 1569 | betaTub97EF-RA | 1057..1095 | 496..458 | 145 | 94.8 | Minus |
| CG9277-PB | 1344 | betaTub56D-RB | 565..617 | 793..741 | 140 | 90.5 | Minus |
| CG9277-PA | 1371 | betaTub56D-RA | 592..644 | 793..741 | 140 | 90.5 | Minus |
| CG9277-PC | 1128 | betaTub56D-RC | 349..401 | 793..741 | 140 | 90.5 | Minus |
| CG9277-PD | 1128 | betaTub56D-RD | 349..401 | 793..741 | 140 | 90.5 | Minus |
| CG4869-PA | 1569 | betaTub97EF-RA | 571..617 | 787..741 | 135 | 91.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:19:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaTub85D-RA | 1841 | CG9359-RA | 777..1571 | 811..17 | 3975 | 100 | Minus |
| betaTub56D-RA | 1701 | CG9277-RA | 763..1526 | 811..48 | 2140 | 85.5 | Minus |
| betaTub56D-RB | 1596 | CG9277-RB | 658..1421 | 811..48 | 2140 | 85.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:19:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9408653..9409447 | 17..811 | 3975 | 100 | Plus |
| 2R | 25286936 | 2R | 19447494..19448257 | 48..811 | 2140 | 85.3 | Plus |
| 2R | 25286936 | 2R | 24311347..24312099 | 811..59 | 1995 | 84.3 | Minus |
| 3R | 32079331 | 3R | 27967268..27967587 | 79..398 | 805 | 83.4 | Plus |
| 3R | 32079331 | 3R | 27968929..27969189 | 405..665 | 720 | 85.1 | Plus |
| 3R | 32079331 | 3R | 27969667..27969803 | 675..811 | 355 | 83.9 | Plus |
| 3R | 32079331 | 3R | 27969439..27969489 | 724..774 | 225 | 96.1 | Plus |
| 3L | 28110227 | 3L | 6531605..6531726 | 664..543 | 220 | 78.7 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:19:21 has no hits.
BS14906.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:46 Download gff for
BS14906.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9359-PA | 548..1341 | 17..810 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:49 Download gff for
BS14906.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub85D-RA | 778..1578 | 10..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:25 Download gff for
BS14906.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub85D-RA | 778..1578 | 10..810 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:25 Download gff for
BS14906.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9408646..9409446 | 10..810 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:49 Download gff for
BS14906.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5234368..5235168 | 10..810 | 99 | | Plus |
BS14906.5prime Sequence
888 bp (816 high quality bases) assembled on 2006-10-13
> BS14906.5prime
GAAGTTATCAGTCGACATGCGTGAAATTGTACACATTCAGGCCGGTCAAT
GCGGTAACCAGATCGGTGGTAAATTCTGGGAGGTAATCTCGGATGAGCAC
TGTATAGATGCGACCGGAACGTACTACGGCGATAGTGATCTCCAGCTGGA
GCGCATCAATGTATACTACAATGAAGCCACCGGTGCCAAGTATGTGCCAC
GCGCAATTCTCGTGGACCTGGAGCCCGGCACCATGGATTCGGTTCGTTCT
GGCGCCTTTGGCCAGATCTTCCGGCCGGACAATTTTGTGTTTGGCCAATC
GGGAGCAGGCAACAACTGGGCCAAGGGTCATTACACCGAGGGTGCTGAAC
TGGTGGATTCCGTCTTGGATGTGGTGCGAAAGGAGTCCGAGGGATGCGAT
TGCCTTCAGGGCTTCCAGCTGACCCACTCGCTGGGTGGCGGCACTGGCTC
CGGCATGGGAACCCTGCTGATCTCGAAGATCCGCGAGGAGTACCCGGACC
GCATCATGAACACCTTCTCGGTGGTGCCCTCGCCCAAGGTGTCCGATACG
GTGGTGGAGCCCTACAATGCCACCCTGAGTGTGCATCAGCTGGTGGAGAA
CACCGATGAGACGTACTGCATCGACAACGAGGCGTTGTATGACATCTGCT
TCCGCACACTGAAGCTGACCACGCCCACCTACGGTGACCTGAACCATCTG
GTTTCGGCCACCATGTCTGGTGTGACGACCTGCCTGCGCTTCCCTGGCCA
GCTGAACGCTGATCTTCGCAAGCTGGCCGTGAACATGGTACCCTTCCCCC
GGCTGCACTTCTTCATGCCCGGATTCGCACCGCTCACCTCGCGAGGATCG
CAACAATACCGGGGCCTTTACCGTCCGGAGCTGACCCA
BS14906.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9359-PA | 1341 | betaTub85D-RA | 1..847 | 17..863 | 4235 | 100 | Plus |
| CG3401-PA | 1365 | betaTub60D-RA | 397..579 | 395..577 | 515 | 91.2 | Plus |
| CG4869-PA | 1569 | betaTub97EF-RA | 901..1013 | 722..834 | 415 | 94.6 | Plus |
| CG4869-PA | 1569 | betaTub97EF-RA | 364..557 | 380..573 | 395 | 88.1 | Plus |
| CG9277-PB | 1344 | betaTub56D-RB | 421..561 | 437..577 | 330 | 89.3 | Plus |
| CG9277-PA | 1371 | betaTub56D-RA | 448..588 | 437..577 | 330 | 89.3 | Plus |
| CG9277-PC | 1128 | betaTub56D-RC | 205..345 | 437..577 | 330 | 89.3 | Plus |
| CG9277-PD | 1128 | betaTub56D-RD | 205..345 | 437..577 | 330 | 89.3 | Plus |
| CG3401-PA | 1365 | betaTub60D-RA | 712..854 | 710..852 | 315 | 88.8 | Plus |
| CG9277-PB | 1344 | betaTub56D-RB | 244..341 | 260..357 | 265 | 90.8 | Plus |
| CG9277-PA | 1371 | betaTub56D-RA | 271..368 | 260..357 | 265 | 90.8 | Plus |
| CG9277-PC | 1128 | betaTub56D-RC | 28..125 | 260..357 | 265 | 90.8 | Plus |
| CG9277-PD | 1128 | betaTub56D-RD | 28..125 | 260..357 | 265 | 90.8 | Plus |
| CG3401-PA | 1365 | betaTub60D-RA | 589..656 | 587..654 | 240 | 94.1 | Plus |
| CG9277-PB | 1344 | betaTub56D-RB | 712..833 | 728..849 | 235 | 87.7 | Plus |
| CG9277-PA | 1371 | betaTub56D-RA | 739..860 | 728..849 | 235 | 87.7 | Plus |
| CG9277-PC | 1128 | betaTub56D-RC | 496..617 | 728..849 | 235 | 87.7 | Plus |
| CG9277-PD | 1128 | betaTub56D-RD | 496..617 | 728..849 | 235 | 87.7 | Plus |
| CG4869-PA | 1569 | betaTub97EF-RA | 752..802 | 600..650 | 205 | 96 | Plus |
| CG3401-PA | 1365 | betaTub60D-RA | 301..344 | 299..342 | 170 | 95.4 | Plus |
| CG9277-PB | 1344 | betaTub56D-RB | 628..683 | 644..699 | 155 | 91 | Plus |
| CG9277-PA | 1371 | betaTub56D-RA | 655..710 | 644..699 | 155 | 91 | Plus |
| CG9277-PC | 1128 | betaTub56D-RC | 412..467 | 644..699 | 155 | 91 | Plus |
| CG9277-PD | 1128 | betaTub56D-RD | 412..467 | 644..699 | 155 | 91 | Plus |
| CG4869-PA | 1569 | betaTub97EF-RA | 283..326 | 299..342 | 145 | 93.1 | Plus |
| CG9277-PB | 1344 | betaTub56D-RB | 565..617 | 581..633 | 140 | 90.5 | Plus |
| CG9277-PA | 1371 | betaTub56D-RA | 592..644 | 581..633 | 140 | 90.5 | Plus |
| CG9277-PC | 1128 | betaTub56D-RC | 349..401 | 581..633 | 140 | 90.5 | Plus |
| CG9277-PD | 1128 | betaTub56D-RD | 349..401 | 581..633 | 140 | 90.5 | Plus |
| CG4869-PA | 1569 | betaTub97EF-RA | 571..617 | 587..633 | 135 | 91.4 | Plus |
| CG9277-PB | 1344 | betaTub56D-RB | 127..158 | 143..174 | 135 | 96.8 | Plus |
| CG9277-PA | 1371 | betaTub56D-RA | 154..185 | 143..174 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:39:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaTub85D-RA | 1841 | CG9359-RA | 231..1102 | 17..888 | 4300 | 99.7 | Plus |
| betaTub56D-RB | 1596 | CG9277-RB | 118..983 | 23..888 | 2080 | 82.9 | Plus |
| betaTub56D-RA | 1701 | CG9277-RA | 274..1088 | 74..888 | 2005 | 83.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:39:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9409122..9409603 | 888..407 | 2335 | 99 | Minus |
| 2R | 25286936 | 2R | 19447959..19448746 | 861..74 | 1975 | 83.4 | Minus |
| 3R | 32079331 | 3R | 9409659..9410052 | 410..17 | 1970 | 100 | Minus |
| 2R | 25286936 | 2R | 24311188..24311645 | 404..861 | 1420 | 87.3 | Plus |
| 3R | 32079331 | 3R | 27972919..27973153 | 540..306 | 725 | 87.2 | Minus |
| 3R | 32079331 | 3R | 27969060..27969189 | 838..709 | 500 | 92.3 | Minus |
| 2R | 25286936 | 2R | 24310910..24311138 | 182..410 | 425 | 79 | Plus |
| 3R | 32079331 | 3R | 27969667..27969829 | 699..537 | 410 | 83.4 | Minus |
| 3R | 32079331 | 3R | 27969439..27969553 | 650..536 | 260 | 81.7 | Minus |
| 3L | 28110227 | 3L | 6531605..6531726 | 710..831 | 220 | 78.7 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:39:04 has no hits.
BS14906.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:46 Download gff for
BS14906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9359-PA | 1..871 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:50 Download gff for
BS14906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub85D-RA | 220..1101 | 5..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:28:05 Download gff for
BS14906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub85D-RA | 220..1101 | 5..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:28:05 Download gff for
BS14906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9409123..9409600 | 410..887 | 99 | <- | Minus |
| 3R | 9409660..9410063 | 5..409 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:50 Download gff for
BS14906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5234845..5235322 | 410..887 | 99 | <- | Minus |
| arm_3R | 5235382..5235785 | 5..409 | 98 | | Minus |
BS14906.complete Sequence
1373 bp assembled on 2006-11-01
GenBank Submission: FJ637829
> BS14906.complete
GAAGTTATCAGTCGACATGCGTGAAATTGTACACATTCAGGCCGGTCAAT
GCGGTAACCAGATCGGTGGTAAATTCTGGGAGGTAATCTCGGATGAGCAC
TGTATAGATGCGACCGGAACGTACTACGGCGATAGTGATCTCCAGCTGGA
GCGCATCAATGTATACTACAATGAAGCCACCGGTGCCAAGTATGTGCCAC
GCGCAATTCTCGTGGACCTGGAGCCCGGCACCATGGATTCGGTTCGTTCT
GGCGCCTTTGGCCAGATCTTCCGGCCGGACAATTTTGTGTTTGGCCAATC
GGGAGCAGGCAACAACTGGGCCAAGGGTCATTACACCGAGGGTGCTGAAC
TGGTGGATTCCGTCTTGGATGTGGTGCGAAAGGAGTCCGAGGGATGCGAT
TGCCTTCAGGGCTTCCAGCTGACCCACTCGCTGGGTGGCGGCACTGGCTC
CGGCATGGGAACCCTGCTGATCTCGAAGATCCGCGAGGAGTACCCGGACC
GCATCATGAACACCTTCTCGGTGGTGCCCTCGCCCAAGGTGTCCGATACG
GTGGTGGAGCCCTACAATGCCACCCTGAGTGTGCATCAGCTGGTGGAGAA
CACCGATGAGACGTACTGCATCGACAACGAGGCGTTGTATGACATCTGCT
TCCGCACACTGAAGCTGACCACGCCCACCTACGGTGACCTGAACCATCTG
GTTTCGGCCACCATGTCTGGTGTGACGACCTGCCTGCGCTTCCCTGGCCA
GCTGAACGCTGATCTTCGCAAGCTGGCCGTGAACATGGTACCCTTCCCCC
GGCTGCACTTCTTCATGCCCGGATTCGCACCGCTCACCTCGCGAGGATCG
CAACAATACCGGGCCCTTACCGTTCCGGAGCTGACCCAGCAGATGTTCGA
TGCCAAGAACATGATGGCTGCGTGCGATCCGCGACATGGTCGCTATCTGA
CCGTCGCCGCCATCTTCCGTGGCCGCATGTCCATGAAGGAGGTGGACGAG
CAGATGCTCAACATTCAGAACAAGAACAGCAGCTTCTTCGTGGAATGGAT
CCCGAATAACTGCAAGACAGCGGTGTGCGATATTCCGCCCAGAGGTCTCA
AGATGTCGGCCACCTTCATTGGCAACTCCACCGCCATTCAGGAGCTATTC
AAACGGGTTTCGGAGCAGTTCACCGCCATGTTCCGAAGGAAGGCCTTCTT
GCATTGGTACACCGGCGAGGGAATGGACGAAATGGAATTCACAGAGGCCG
AGAGCAACATGAACGACTTGGTTTCTGAATATCAGCAGTACCAGGAGGCG
ACTGCCGATGAGGAGGGCGAATTCGATGAAGACGAAGAGGGTGGCGGCGA
TGAATAAAAGCTTTCTAGACCAT
BS14906.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:42:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaTub85D-RA | 1341 | CG9359-PA | 1..1341 | 17..1357 | 6705 | 100 | Plus |
| betaTub56D-RB | 1344 | CG9277-PB | 7..1310 | 23..1326 | 3400 | 84 | Plus |
| betaTub56D-RA | 1371 | CG9277-PA | 85..1337 | 74..1326 | 3325 | 84.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:42:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaTub85D-RA | 1841 | CG9359-RA | 231..1571 | 17..1357 | 6705 | 100 | Plus |
| betaTub56D-RB | 1596 | CG9277-RB | 118..1421 | 23..1326 | 3400 | 84 | Plus |
| betaTub56D-RA | 1701 | CG9277-RA | 274..1526 | 74..1326 | 3325 | 84.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:42:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9408653..9409603 | 1357..407 | 4755 | 100 | Minus |
| 2R | 25286936 | 2R | 19447494..19448746 | 1326..74 | 3325 | 84.4 | Minus |
| 2R | 25286936 | 2R | 24311188..24312099 | 404..1315 | 2580 | 85.5 | Plus |
| 3R | 32079331 | 3R | 9409659..9410052 | 410..17 | 1970 | 100 | Minus |
| 3R | 32079331 | 3R | 27967268..27967587 | 1295..976 | 805 | 83.4 | Minus |
| 3R | 32079331 | 3R | 27972919..27973153 | 540..306 | 725 | 87.2 | Minus |
| 3R | 32079331 | 3R | 27968929..27969189 | 969..709 | 720 | 85.1 | Minus |
| 2R | 25286936 | 2R | 24310910..24311138 | 182..410 | 425 | 79 | Plus |
| 3R | 32079331 | 3R | 27969667..27969829 | 699..537 | 410 | 83.4 | Minus |
| 3R | 32079331 | 3R | 27969439..27969553 | 650..536 | 260 | 81.7 | Minus |
| 3L | 28110227 | 3L | 6531605..6531726 | 710..831 | 220 | 78.7 | Plus |
| 3L | 28110227 | 3L | 6531932..6532036 | 1037..1141 | 195 | 79 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:42:20 has no hits.
BS14906.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:14 Download gff for
BS14906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub85D-RA | 1..1341 | 17..1357 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:56 Download gff for
BS14906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub85D-RA | 220..1578 | 5..1364 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:05 Download gff for
BS14906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub85D-RA | 231..1569 | 17..1355 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:15 Download gff for
BS14906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub85D-RA | 220..1578 | 5..1364 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:40 Download gff for
BS14906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub85D-RA | 231..1569 | 17..1355 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:40 Download gff for
BS14906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9408655..9409600 | 410..1355 | 100 | <- | Minus |
| 3R | 9409660..9410052 | 17..409 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:05 Download gff for
BS14906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5234377..5235322 | 410..1355 | 100 | <- | Minus |
| arm_3R | 5235382..5235774 | 17..409 | 100 | | Minus |
BS14906.pep Sequence
Translation from 16 to 1356
> BS14906.pep
MREIVHIQAGQCGNQIGGKFWEVISDEHCIDATGTYYGDSDLQLERINVY
YNEATGAKYVPRAILVDLEPGTMDSVRSGAFGQIFRPDNFVFGQSGAGNN
WAKGHYTEGAELVDSVLDVVRKESEGCDCLQGFQLTHSLGGGTGSGMGTL
LISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETY
CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADL
RKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSFFVEWIPNNCK
TAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTG
EGMDEMEFTEAESNMNDLVSEYQQYQEATADEEGEFDEDEEGGGDE*
BS14906.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaTub85D-PA | 446 | CG9359-PA | 1..446 | 1..446 | 2365 | 100 | Plus |
| betaTub56D-PB | 447 | CG9277-PB | 1..446 | 1..446 | 2248 | 94.6 | Plus |
| betaTub56D-PA | 456 | CG9277-PA | 29..455 | 20..446 | 2152 | 94.6 | Plus |
| betaTub60D-PB | 453 | CG3401-PB | 1..446 | 1..441 | 2112 | 88.1 | Plus |
| betaTub60D-PA | 454 | CG3401-PA | 1..447 | 1..441 | 2111 | 87.9 | Plus |
