Clone Sequence Records
BS14908.3prime Sequence
438 bp (438 high quality bases) assembled on 2006-10-13
> BS14908.3prime
ATGGTCTAGAAAGCTTTTAATCGAAGTAATTCATAAGCGTACACTGGACG
CTGGTACAGTCGGGCAGTGAAGTGAACAGCACGCAGGATAACTTATAATC
GTAGATGAACTCGCAAGTGGGGAAGCTGACGGTGAAGAACCAGGTGCACT
TGAAGTTGCACAATATGCCATAGGGCTTCTTCAGCTGCTCCTTTTTGTTG
ACCACAGTGTTCTGCAGATTGTAGCCATCGTAACGGCGCCAGCAATGGTT
AATGTTACGGCGAATGTGGTGACTGCCGCCATGGTGATGAAAGTCCCGTC
CCTCCAGCTGACCCCCGTGCCCGTTGGTGGCCTCCACGCCTCTGACGCCC
CTGCCACCGAAAAGCAGGAGGTACCAGAGGACCAGGGAGCTGACGATGAA
GATGTAAGTCACTAATTTGGCCATGTCGACTGATAACT
BS14908.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1537-PA | 408 | CG1537-RA | 1..408 | 424..17 | 2040 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:16:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1537-RA | 869 | CG1537-RA | 329..736 | 424..17 | 2040 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:16:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11062673..11062842 | 255..424 | 850 | 100 | Plus |
X | 23542271 | X | 11062331..11062463 | 126..258 | 665 | 100 | Plus |
X | 23542271 | X | 11062160..11062271 | 17..128 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:16:21 has no hits.
BS14908.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:48 Download gff for
BS14908.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1537-PA | 1..408 | 17..424 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:17:25 Download gff for
BS14908.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1537-RA | 326..738 | 12..427 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:59 Download gff for
BS14908.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1537-RA | 326..738 | 12..427 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:59 Download gff for
BS14908.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11062331..11062463 | 126..258 | 100 | <- | Plus |
X | 11062677..11062845 | 259..427 | 99 | | Plus |
X | 11062158..11062268 | 12..125 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:17:25 Download gff for
BS14908.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10956191..10956301 | 12..125 | 97 | <- | Plus |
arm_X | 10956364..10956496 | 126..258 | 100 | <- | Plus |
arm_X | 10956710..10956878 | 259..427 | 99 | | Plus |
BS14908.5prime Sequence
438 bp (438 high quality bases) assembled on 2006-10-13
> BS14908.5prime
GAAGTTATCAGTCGACATGGCCAAATTAGTGACTTACATCTTCATCGTCA
GCTCCCTGGTCCTCTGGTACCTCCTGCTTTTCGGTGGCAGGGGCGTCAGA
GGCGTGGAGGCCACCAACGGGCACGGGGGTCAGCTGGAGGGACGGGACTT
TCATCACCATGGCGGCAGTCACCACATTCGCCGTAACATTAACCATTGCT
GGCGCCGTTACGATGGCTACAATCTGCAGAACACTGTGGTCAACAAAAAG
GAGCAGCTGAAGAAGCCCTATGGCATATTGTGCAACTTCAAGTGCACCTG
GTTCTTCACCGTCAGCTTCCCCACTTGCGAGTTCATCTACGATTATAAGT
TATCCTGCGTGCTGTTCACTTCACTGCCCGACTGTACCAGCGTCCAGTGT
ACGCTTATGAATTACTTCGATTAAAAGCTTTCTAGACC
BS14908.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1537-PA | 408 | CG1537-RA | 1..408 | 17..424 | 2040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:39:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1537-RA | 869 | CG1537-RA | 329..736 | 17..424 | 2040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:39:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11062673..11062842 | 186..17 | 850 | 100 | Minus |
X | 23542271 | X | 11062331..11062463 | 315..183 | 665 | 100 | Minus |
X | 23542271 | X | 11062160..11062271 | 424..313 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:39:16 has no hits.
BS14908.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:48 Download gff for
BS14908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1537-PA | 1..408 | 17..424 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:53 Download gff for
BS14908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1537-RA | 326..738 | 14..429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:28:07 Download gff for
BS14908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1537-RA | 326..738 | 14..429 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:28:07 Download gff for
BS14908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11062158..11062268 | 316..429 | 97 | <- | Minus |
X | 11062331..11062463 | 183..315 | 100 | <- | Minus |
X | 11062677..11062845 | 14..182 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:53 Download gff for
BS14908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10956191..10956301 | 316..429 | 97 | <- | Minus |
arm_X | 10956364..10956496 | 183..315 | 100 | <- | Minus |
arm_X | 10956710..10956878 | 14..182 | 99 | | Minus |
BS14908.complete Sequence
440 bp assembled on 2006-11-01
GenBank Submission: FJ637830
> BS14908.complete
GAAGTTATCAGTCGACATGGCCAAATTAGTGACTTACATCTTCATCGTCA
GCTCCCTGGTCCTCTGGTACCTCCTGCTTTTCGGTGGCAGGGGCGTCAGA
GGCGTGGAGGCCACCAACGGGCACGGGGGTCAGCTGGAGGGACGGGACTT
TCATCACCATGGCGGCAGTCACCACATTCGCCGTAACATTAACCATTGCT
GGCGCCGTTACGATGGCTACAATCTGCAGAACACTGTGGTCAACAAAAAG
GAGCAGCTGAAGAAGCCCTATGGCATATTGTGCAACTTCAAGTGCACCTG
GTTCTTCACCGTCAGCTTCCCCACTTGCGAGTTCATCTACGATTATAAGT
TATCCTGCGTGCTGTTCACTTCACTGCCCGACTGTACCAGCGTCCAGTGT
ACGCTTATGAATTACTTCGATTAAAAGCTTTCTAGACCAT
BS14908.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:31:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1537-RA | 408 | CG1537-PA | 1..408 | 17..424 | 2040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1537-RA | 869 | CG1537-RA | 329..736 | 17..424 | 2040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11062673..11062842 | 186..17 | 850 | 100 | Minus |
X | 23542271 | X | 11062331..11062463 | 315..183 | 665 | 100 | Minus |
X | 23542271 | X | 11062160..11062271 | 424..313 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:31:10 has no hits.
BS14908.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:16 Download gff for
BS14908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1537-RA | 1..408 | 17..424 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:58 Download gff for
BS14908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1537-RA | 241..653 | 14..429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:29:18 Download gff for
BS14908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1537-RA | 329..734 | 17..422 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:16 Download gff for
BS14908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1537-RA | 241..653 | 14..429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:12 Download gff for
BS14908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1537-RA | 329..734 | 17..422 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:12 Download gff for
BS14908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11062677..11062842 | 17..182 | 100 | | Minus |
X | 11062162..11062268 | 316..422 | 100 | <- | Minus |
X | 11062331..11062463 | 183..315 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:29:18 Download gff for
BS14908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10956195..10956301 | 316..422 | 100 | <- | Minus |
arm_X | 10956364..10956496 | 183..315 | 100 | <- | Minus |
arm_X | 10956710..10956875 | 17..182 | 100 | | Minus |
BS14908.pep Sequence
Translation from 16 to 423
> BS14908.pep
MAKLVTYIFIVSSLVLWYLLLFGGRGVRGVEATNGHGGQLEGRDFHHHGG
SHHIRRNINHCWRRYDGYNLQNTVVNKKEQLKKPYGILCNFKCTWFFTVS
FPTCEFIYDYKLSCVLFTSLPDCTSVQCTLMNYFD*
BS14908.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1537-PA | 135 | CG1537-PA | 1..135 | 1..135 | 760 | 100 | Plus |
CG1545-PB | 128 | CG1545-PB | 51..115 | 59..128 | 148 | 37.1 | Plus |