Clone BS14908 Report

Search the DGRC for BS14908

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:149
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG1537-RA
Protein status:BS14908.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14908.3prime Sequence

438 bp (438 high quality bases) assembled on 2006-10-13

> BS14908.3prime
ATGGTCTAGAAAGCTTTTAATCGAAGTAATTCATAAGCGTACACTGGACG
CTGGTACAGTCGGGCAGTGAAGTGAACAGCACGCAGGATAACTTATAATC
GTAGATGAACTCGCAAGTGGGGAAGCTGACGGTGAAGAACCAGGTGCACT
TGAAGTTGCACAATATGCCATAGGGCTTCTTCAGCTGCTCCTTTTTGTTG
ACCACAGTGTTCTGCAGATTGTAGCCATCGTAACGGCGCCAGCAATGGTT
AATGTTACGGCGAATGTGGTGACTGCCGCCATGGTGATGAAAGTCCCGTC
CCTCCAGCTGACCCCCGTGCCCGTTGGTGGCCTCCACGCCTCTGACGCCC
CTGCCACCGAAAAGCAGGAGGTACCAGAGGACCAGGGAGCTGACGATGAA
GATGTAAGTCACTAATTTGGCCATGTCGACTGATAACT

BS14908.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG1537-PA 408 CG1537-RA 1..408 424..17 2040 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:16:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG1537-RA 869 CG1537-RA 329..736 424..17 2040 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:16:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11062673..11062842 255..424 850 100 Plus
X 23542271 X 11062331..11062463 126..258 665 100 Plus
X 23542271 X 11062160..11062271 17..128 560 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:16:21 has no hits.

BS14908.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:48 Download gff for BS14908.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1537-PA 1..408 17..424 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:17:25 Download gff for BS14908.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1537-RA 326..738 12..427 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:59 Download gff for BS14908.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1537-RA 326..738 12..427 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:59 Download gff for BS14908.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11062331..11062463 126..258 100 <- Plus
X 11062677..11062845 259..427 99   Plus
X 11062158..11062268 12..125 97 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:17:25 Download gff for BS14908.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10956191..10956301 12..125 97 <- Plus
arm_X 10956364..10956496 126..258 100 <- Plus
arm_X 10956710..10956878 259..427 99   Plus

BS14908.5prime Sequence

438 bp (438 high quality bases) assembled on 2006-10-13

> BS14908.5prime
GAAGTTATCAGTCGACATGGCCAAATTAGTGACTTACATCTTCATCGTCA
GCTCCCTGGTCCTCTGGTACCTCCTGCTTTTCGGTGGCAGGGGCGTCAGA
GGCGTGGAGGCCACCAACGGGCACGGGGGTCAGCTGGAGGGACGGGACTT
TCATCACCATGGCGGCAGTCACCACATTCGCCGTAACATTAACCATTGCT
GGCGCCGTTACGATGGCTACAATCTGCAGAACACTGTGGTCAACAAAAAG
GAGCAGCTGAAGAAGCCCTATGGCATATTGTGCAACTTCAAGTGCACCTG
GTTCTTCACCGTCAGCTTCCCCACTTGCGAGTTCATCTACGATTATAAGT
TATCCTGCGTGCTGTTCACTTCACTGCCCGACTGTACCAGCGTCCAGTGT
ACGCTTATGAATTACTTCGATTAAAAGCTTTCTAGACC

BS14908.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1537-PA 408 CG1537-RA 1..408 17..424 2040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG1537-RA 869 CG1537-RA 329..736 17..424 2040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11062673..11062842 186..17 850 100 Minus
X 23542271 X 11062331..11062463 315..183 665 100 Minus
X 23542271 X 11062160..11062271 424..313 560 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:39:16 has no hits.

BS14908.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:48 Download gff for BS14908.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1537-PA 1..408 17..424 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:53 Download gff for BS14908.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1537-RA 326..738 14..429 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:28:07 Download gff for BS14908.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1537-RA 326..738 14..429 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:28:07 Download gff for BS14908.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11062158..11062268 316..429 97 <- Minus
X 11062331..11062463 183..315 100 <- Minus
X 11062677..11062845 14..182 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:53 Download gff for BS14908.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10956191..10956301 316..429 97 <- Minus
arm_X 10956364..10956496 183..315 100 <- Minus
arm_X 10956710..10956878 14..182 99   Minus

BS14908.complete Sequence

440 bp assembled on 2006-11-01

GenBank Submission: FJ637830

> BS14908.complete
GAAGTTATCAGTCGACATGGCCAAATTAGTGACTTACATCTTCATCGTCA
GCTCCCTGGTCCTCTGGTACCTCCTGCTTTTCGGTGGCAGGGGCGTCAGA
GGCGTGGAGGCCACCAACGGGCACGGGGGTCAGCTGGAGGGACGGGACTT
TCATCACCATGGCGGCAGTCACCACATTCGCCGTAACATTAACCATTGCT
GGCGCCGTTACGATGGCTACAATCTGCAGAACACTGTGGTCAACAAAAAG
GAGCAGCTGAAGAAGCCCTATGGCATATTGTGCAACTTCAAGTGCACCTG
GTTCTTCACCGTCAGCTTCCCCACTTGCGAGTTCATCTACGATTATAAGT
TATCCTGCGTGCTGTTCACTTCACTGCCCGACTGTACCAGCGTCCAGTGT
ACGCTTATGAATTACTTCGATTAAAAGCTTTCTAGACCAT

BS14908.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:31:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1537-RA 408 CG1537-PA 1..408 17..424 2040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG1537-RA 869 CG1537-RA 329..736 17..424 2040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11062673..11062842 186..17 850 100 Minus
X 23542271 X 11062331..11062463 315..183 665 100 Minus
X 23542271 X 11062160..11062271 424..313 560 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:31:10 has no hits.

BS14908.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:16 Download gff for BS14908.complete
Subject Subject Range Query Range Percent Splice Strand
CG1537-RA 1..408 17..424 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:58 Download gff for BS14908.complete
Subject Subject Range Query Range Percent Splice Strand
CG1537-RA 241..653 14..429 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:29:18 Download gff for BS14908.complete
Subject Subject Range Query Range Percent Splice Strand
CG1537-RA 329..734 17..422 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:16 Download gff for BS14908.complete
Subject Subject Range Query Range Percent Splice Strand
CG1537-RA 241..653 14..429 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:12 Download gff for BS14908.complete
Subject Subject Range Query Range Percent Splice Strand
CG1537-RA 329..734 17..422 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:12 Download gff for BS14908.complete
Subject Subject Range Query Range Percent Splice Strand
X 11062677..11062842 17..182 100   Minus
X 11062162..11062268 316..422 100 <- Minus
X 11062331..11062463 183..315 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:29:18 Download gff for BS14908.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10956195..10956301 316..422 100 <- Minus
arm_X 10956364..10956496 183..315 100 <- Minus
arm_X 10956710..10956875 17..182 100   Minus

BS14908.pep Sequence

Translation from 16 to 423

> BS14908.pep
MAKLVTYIFIVSSLVLWYLLLFGGRGVRGVEATNGHGGQLEGRDFHHHGG
SHHIRRNINHCWRRYDGYNLQNTVVNKKEQLKKPYGILCNFKCTWFFTVS
FPTCEFIYDYKLSCVLFTSLPDCTSVQCTLMNYFD*

BS14908.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG1537-PA 135 CG1537-PA 1..135 1..135 760 100 Plus
CG1545-PB 128 CG1545-PB 51..115 59..128 148 37.1 Plus