Clone BS14910 Report

Search the DGRC for BS14910

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:149
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptKaz1-ORFB-RA
Protein status:BS14910.pep: full length peptide match
Sequenced Size:377

Clone Sequence Records

BS14910.complete Sequence

377 bp assembled on 2010-02-09

GenBank Submission: KX800164

> BS14910.complete
GAAGTTATCAGTCGACATGGATTGGATCAAAATATTTGTTTCAGGTCTTG
CCCTGCTATTGATTGGGATGGCGCAGTGCTACCCGCAGTTCGATAGCGAA
AACCCCTGGTTGAGGCCTCGGCAACCCACTGAACCTACGATATCTCCGAA
TGCGGGGGGCAGTACCCCGGCCAACGCTGCTCCACCAACCACCCAGTCAC
CGCGCTATTTCGCCTGTTTCCATTCATGCCCGGCCACCAGCGAGTACAAT
CCAATCTGCGGCAGTGATAACGTGAACTACTACAATGAAAACAAGTTCAA
CTGCGCCTTGAACTGCGGCCTAAACATCCGGAAGGTGCACAAGGGAATTT
GTCAGACTTAGAAGCTTTCTAGACCAT

BS14910.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
Kaz1-ORFB-RF 345 CG1220-PF 1..345 17..361 1725 100 Plus
Kaz1-ORFB-RE 345 CG1220-PE 1..345 17..361 1725 100 Plus
Kaz1-ORFB-RA 345 CG1220-PA 1..345 17..361 1725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
Kaz1-ORFB-RF 1130 CG1220-RF 616..964 13..361 1730 99.7 Plus
Kaz1-ORFB-RE 1143 CG1220-RE 629..977 13..361 1730 99.7 Plus
Kaz1-ORFB-RA 562 CG1220-RA 48..396 13..361 1730 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:32:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 217490..217775 38..323 1430 100 Plus
3L 28110227 3L 217855..217892 324..361 190 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:32:30 has no hits.

BS14910.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:07 Download gff for BS14910.complete
Subject Subject Range Query Range Percent Splice Strand
Kaz1-ORFB-RF 620..964 17..361 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:26 Download gff for BS14910.complete
Subject Subject Range Query Range Percent Splice Strand
Kaz1-ORFB-RA 52..396 17..361 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:09:45 Download gff for BS14910.complete
Subject Subject Range Query Range Percent Splice Strand
Kaz1-ORFB-RF 620..964 17..361 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:31:15 Download gff for BS14910.complete
Subject Subject Range Query Range Percent Splice Strand
Kaz1-ORFB-RA 52..396 17..361 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:31:15 Download gff for BS14910.complete
Subject Subject Range Query Range Percent Splice Strand
3L 217421..217442 17..38 100 -> Plus
3L 217491..217775 39..323 100 -> Plus
3L 217855..217892 324..361 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:26 Download gff for BS14910.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 217421..217442 17..38 100 -> Plus
arm_3L 217491..217775 39..323 100 -> Plus
arm_3L 217855..217892 324..361 100   Plus

BS14910.3prime Sequence

375 bp (375 high quality bases) assembled on 2006-10-13

> BS14910.3prime
ATGGTCTAGAAAGCTTCTAAGTCTGACAAATTCCCTTGTGCACCTTCCGG
ATGTTTAGGCCGCAGTTCAAGGCGCAGTTGAACTTGTTTTCATTGTAGTA
GTTCACGTTATCACTGCCGCAGATTGGATTGTACTCGCTGGTGGCCGGGC
ATGAATGGAAACAGGCGAAATAGCGCGGTGACTGGGTGGTTGGTGGAGCA
GCGTTGGCCGGGGTACTGCCCCCCGCATTCGGAGATATCGTAGGTTCAGT
GGGTTGCCGAGGCCTCAACCAGGGGTTTTCGCTATCGAACTGCGGGTAGC
ACTGCGCCATCCCAATCAATAGCAGGGCAAGACCTGAAACAAATATTTTG
ATCCAATCCATGTCGACTGATAACT

BS14910.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1220-PA 345 Kaz1-ORFB-RA 1..345 361..17 1725 100 Minus
CG1220-PE 345 Kaz1-ORFB-RE 1..345 361..17 1725 100 Minus
CG1220-PF 345 Kaz1-ORFB-RF 1..345 361..17 1725 100 Minus
CG1220-PH 348 Kaz1-ORFB-RH 1..307 361..55 1535 100 Minus
CG1220-PC 294 Kaz1-ORFB-RC 1..294 310..17 1470 100 Minus
CG1220-PG 297 Kaz1-ORFB-RG 1..256 310..55 1280 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:09:26
Subject Length Description Subject Range Query Range Score Percent Strand
Kaz1-ORFB-RF 1130 CG1220-RF 616..964 365..17 1730 99.7 Minus
Kaz1-ORFB-RE 1143 CG1220-RE 629..977 365..17 1730 99.7 Minus
Kaz1-ORFB-RA 562 CG1220-RA 48..396 365..17 1730 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 217490..217775 340..55 1430 100 Minus
3L 28110227 3L 217855..217892 54..17 190 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:09:25 has no hits.

BS14910.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:48 Download gff for BS14910.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1220-PF 1..345 17..361 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:10:56 Download gff for BS14910.3prime
Subject Subject Range Query Range Percent Splice Strand
Kaz1-ORFB-RA 45..399 12..370 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:01:51 Download gff for BS14910.3prime
Subject Subject Range Query Range Percent Splice Strand
Kaz1-ORFB-RA 45..399 12..370 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:01:51 Download gff for BS14910.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 217491..217775 55..339 100 -> Minus
3L 217855..217895 12..54 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:10:56 Download gff for BS14910.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 217491..217775 55..339 100 -> Minus
arm_3L 217855..217895 12..54 93   Minus

BS14910.pep Sequence

Translation from 16 to 360

> BS14910.pep
MDWIKIFVSGLALLLIGMAQCYPQFDSENPWLRPRQPTEPTISPNAGGST
PANAAPPTTQSPRYFACFHSCPATSEYNPICGSDNVNYYNENKFNCALNC
GLNIRKVHKGICQT*

BS14910.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
Kaz1-ORFB-PF 114 CG1220-PF 1..114 1..114 642 100 Plus
Kaz1-ORFB-PE 114 CG1220-PE 1..114 1..114 642 100 Plus
Kaz1-ORFB-PA 114 CG1220-PA 1..114 1..114 642 100 Plus
Kaz1-ORFB-PH 115 CG1220-PH 1..103 1..103 577 99 Plus
CG34454-PA 133 CG34454-PA 3..125 1..113 194 38.9 Plus