Clone Sequence Records
BS14912.complete Sequence
707 bp assembled on 2010-02-09
GenBank Submission: KX806110
> BS14912.complete
GAAGTTATCAGTCGACATGGATTCCAAACTAGATATGTTCGAGGACGTGA
ACACGTCGCCTTCATTGGAGGGCGACATGTCGATTCCGGGCAAAAGAACC
ACAACTGCAACGTCCGCGAGCGGAGTGCCGGAATACAATACTCTGGATGA
GCCCATCCGCGAGACAGTGCTGAGGGACATTCGGGCCGTAGGCATTAAGT
TCTACCACGTCCTGTACCCCAAGGAGAAGTCCAGTCTGCTACGAGATTGG
GACCTTTGGGGTCCACTGGTGCTGTGCACCTTCATGGCCACCATACTACA
AGGCTCCTCCACCGCCGACAGCATGTCTGACAACGGACCCGAGTTCGCCC
AGGTCTTCGTAATCGTCTGGATAGGTGCAGCCGTAGTCACACTCAACTCC
AAGCTGCTGGGCGGCAATATCTCATTCTTCCAATCCGTCTGCGTGCTGGG
CTACTGCCTTACGCCGGTGGCCATTTCCCTAATTGTGTGCCGGGTAATCC
TGCTTGCCACCCAAACGCGGCTGCTCTTCTTTCTGCGTTTTGTGACCACC
ACCATAGGCTTTGCCTGGGCCACTTACGCTTCCTTTGTTTTCCTGGGTCA
GAGCCAGCCTCCCCATCGAAAACCGCTTGCCGTGTACCCCATCTTTCTGT
TCTTCTTCATCATCTCGTGGTTGGTTCTTTCCCACAATTAGAAGCTTTCT
AGACCAT
BS14912.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:21:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3652-RA | 675 | CG3652-PA | 1..675 | 17..691 | 3375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:21:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3652-RA | 867 | CG3652-RA | 87..761 | 17..691 | 3375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:21:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4393501..4393715 | 249..35 | 1075 | 100 | Minus |
2L | 23513712 | 2L | 4393262..4393433 | 420..249 | 860 | 100 | Minus |
2L | 23513712 | 2L | 4393042..4393199 | 578..421 | 790 | 100 | Minus |
2L | 23513712 | 2L | 4392876..4392989 | 691..578 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:21:01 has no hits.
BS14912.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:44 Download gff for
BS14912.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3652-RA | 1..675 | 17..691 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:18 Download gff for
BS14912.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3652-RA | 25..699 | 17..691 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:24 Download gff for
BS14912.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3652-RA | 87..761 | 17..691 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:44:21 Download gff for
BS14912.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3652-RA | 25..699 | 17..691 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:20 Download gff for
BS14912.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3652-RA | 87..761 | 17..691 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:20 Download gff for
BS14912.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4392876..4392988 | 579..691 | 100 | <- | Minus |
2L | 4393042..4393199 | 421..578 | 100 | <- | Minus |
2L | 4393262..4393433 | 249..420 | 100 | <- | Minus |
2L | 4393502..4393715 | 35..248 | 100 | <- | Minus |
2L | 4393773..4393790 | 17..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:24 Download gff for
BS14912.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4392876..4392988 | 579..691 | 100 | <- | Minus |
arm_2L | 4393042..4393199 | 421..578 | 100 | <- | Minus |
arm_2L | 4393262..4393433 | 249..420 | 100 | <- | Minus |
arm_2L | 4393502..4393715 | 35..248 | 100 | <- | Minus |
arm_2L | 4393773..4393790 | 17..34 | 100 | | Minus |
BS14912.5prime Sequence
705 bp (705 high quality bases) assembled on 2006-10-13
> BS14912.5prime
GAAGTTATCAGTCGACATGGATTCCAAACTAGATATGTTCGAGGACGTGA
ACACGTCGCCTTCATTGGAGGGCGACATGTCGATTCCGGGCAAAAGAACC
ACAACTGCAACGTCCGCGAGCGGAGTGCCGGAATACAATACTCTGGATGA
GCCCATCCGCGAGACAGTGCTGAGGGACATTCGGGCCGTAGGCATTAAGT
TCTACCACGTCCTGTACCCCAAGGAGAAGTCCAGTCTGCTACGAGATTGG
GACCTTTGGGGTCCACTGGTGCTGTGCACCTTCATGGCCACCATACTACA
AGGCTCCTCCACCGCCGACAGCATGTCTGACAACGGACCCGAGTTCGCCC
AGGTCTTCGTAATCGTCTGGATAGGTGCAGCCGTAGTCACACTCAACTCC
AAGCTGCTGGGCGGCAATATCTCATTCTTCCAATCCGTCTGCGTGCTGGG
CTACTGCCTTACGCCGGTGGCCATTTCCCTAATTGTGTGCCGGGTAATCC
TGCTTGCCACCCAAACGCGGCTGCTCTTCTTTCTGCGTTTTGTGACCACC
ACCATAGGCTTTGCCTGGGCCACTTACGCTTCCTTTGTTTTCCTGGGTCA
GAGCCAGCCTCCCCATCGAAAACCGCTTGCCGTGTACCCCATCTTTCTGT
TCTTCTTCATCATCTCGTGGTTGGTTCTTTCCCACAATTAGAAGCTTTCT
AGACC
BS14912.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:26:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3652-PA | 675 | CG3652-RA | 1..675 | 17..691 | 3375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:53:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3652-RA | 867 | CG3652-RA | 87..761 | 17..691 | 3375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:53:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4393501..4393715 | 249..35 | 1075 | 100 | Minus |
2L | 23513712 | 2L | 4393262..4393433 | 420..249 | 860 | 100 | Minus |
2L | 23513712 | 2L | 4393042..4393199 | 578..421 | 790 | 100 | Minus |
2L | 23513712 | 2L | 4392876..4392989 | 691..578 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:53:45 has no hits.
BS14912.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:50 Download gff for
BS14912.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3652-PA | 1..675 | 17..691 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:23:17 Download gff for
BS14912.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3652-RA | 85..761 | 13..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:22:19 Download gff for
BS14912.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3652-RA | 85..761 | 13..691 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:22:19 Download gff for
BS14912.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4392876..4392988 | 579..691 | 100 | <- | Minus |
2L | 4393042..4393199 | 421..578 | 100 | <- | Minus |
2L | 4393262..4393433 | 249..420 | 100 | <- | Minus |
2L | 4393502..4393715 | 35..248 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:23:17 Download gff for
BS14912.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4392876..4392988 | 579..691 | 100 | <- | Minus |
arm_2L | 4393042..4393199 | 421..578 | 100 | <- | Minus |
arm_2L | 4393262..4393433 | 249..420 | 100 | <- | Minus |
arm_2L | 4393502..4393715 | 35..248 | 100 | <- | Minus |
BS14912.pep Sequence
Translation from 16 to 690
> BS14912.pep
MDSKLDMFEDVNTSPSLEGDMSIPGKRTTTATSASGVPEYNTLDEPIRET
VLRDIRAVGIKFYHVLYPKEKSSLLRDWDLWGPLVLCTFMATILQGSSTA
DSMSDNGPEFAQVFVIVWIGAAVVTLNSKLLGGNISFFQSVCVLGYCLTP
VAISLIVCRVILLATQTRLLFFLRFVTTTIGFAWATYASFVFLGQSQPPH
RKPLAVYPIFLFFFIISWLVLSHN*
BS14912.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:58:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3652-PA | 224 | CG3652-PA | 1..224 | 1..224 | 1161 | 100 | Plus |