Clone Sequence Records
BS14917.3prime Sequence
738 bp (728 high quality bases) assembled on 2006-10-13
> BS14917.3prime
ATGGTCTAGAAAGCTTTTACGCCGACATCGTCTTGACCGTGGACGACACT
CCGGACGTGGCCATTGCCTTGGCGCTGCGCGCCACCATAGTCCGTATGCG
TTCCTGGAGATAATCACAGATGGAGGTGTACTTTTGCTGGTGCGCCAACT
GCAGGGCCGTCAGACCATCGTGGTTCTTCAGCAGGACATCGCTGCCGGCG
GCCACCAGCTGCTTGCAGACGGTCATGTGGCCAAACATGGCGGCGGCATG
CAGTGCGGACTCTCCATTGGGCAGCTGGCCGAGATTGGGTCGGTATTTGA
GCAGCACGGTGATTACGGCGGCATGGCCCTTGTGAGCCGCCTTGAAGAGG
GGCGTGGCGCCGTCGCAACGCACGGTGTCCACATTGGCGCCGTTCTGGAG
CAGCACCTTGCATATGTGATCCTGTCCCATCTGGGCTGCTATCCACAGGG
GCGTGGCGCCGTCTATCCGCTTGATATCGATCTCGGCACCAGCCTGAATC
AGCAGCGACAGAACCGTGCGATGGCCATTTTGGGCGGAGATAAAAACCGG
CGTGGCTCGATCCTTCATGTGCGCATTGACATTCGCTCCGCAGTCCAAGA
GCTCGCGAACGATCTTCACGTGACCACCCTGGCAGGCCACAAAAAGGGGC
GTGCCGCCATCCGCGGAGGGCGTGTCCACGCTGGCGCCCGCCTTTATCAG
AATCTTCACCACGTCCAGGTGGCCGCCTTGGGCGGCGA
BS14917.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3104-PA | 966 | CG3104-RA | 245..966 | 738..17 | 3610 | 100 | Minus |
| CG3104-PB | 966 | CG3104-RB | 245..966 | 738..17 | 3610 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:15:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3104-RC | 2395 | CG3104-RC | 1174..1895 | 738..17 | 3610 | 100 | Minus |
| CG3104-RB | 1933 | CG3104-RB | 712..1433 | 738..17 | 3610 | 100 | Minus |
| CG3104-RA | 2213 | CG3104-RA | 749..1470 | 738..17 | 3610 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:15:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2849732..2850279 | 17..564 | 2740 | 100 | Plus |
| 2L | 23513712 | 2L | 2850334..2850510 | 562..738 | 885 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:15:19 has no hits.
BS14917.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:54 Download gff for
BS14917.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3104-PB | 246..966 | 17..737 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:04:45 Download gff for
BS14917.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3104-RA | 750..1470 | 17..737 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:32:04 Download gff for
BS14917.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3104-RA | 750..1470 | 17..737 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:32:04 Download gff for
BS14917.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2849732..2850277 | 17..562 | 100 | <- | Plus |
| 2L | 2850335..2850509 | 563..737 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:04:45 Download gff for
BS14917.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2849732..2850277 | 17..562 | 100 | <- | Plus |
| arm_2L | 2850335..2850509 | 563..737 | 100 | | Plus |
BS14917.5prime Sequence
785 bp (726 high quality bases) assembled on 2006-10-13
> BS14917.5prime
GAAGTTATCAGTCGACATGTCGCTTAAGAAGGAGACGCCCTCGGATGTGC
AACTGCACATGGCAGCGATGAGGGGAGATGAGGTGGCTCTTCTTCGCGTT
CTGGACAGTGGCAAAGTGCATGTCGACTGCAAGGATGAGGATGGAACCAC
CCCACTGATTTTGGCTGCTGCCGGAGGTCACACCTACTGCGTGATGGAGC
TGCTCGATCAGGGAGCCGATCCAAACTCGCGTCGCCTAACGGGCACCACG
CCCCTTTTCTTCGCCGCCCAAGGCGGCCACCTGGACGTGGTGAAGATTCT
GATAAAGGCGGGCGCCAGCGTGGACACGCCCTCCGCGGATGGCGGCACGC
CCCTTTTTGTGGCCTGCCAGGGTGGTCACGTGAAGATCGTTCGCGAGCTC
TTGGACTGCGGAGCGAATGTCAATGCGCACATGAAGGATCGAGCCACGCC
GGTTTTTATCTCCGCCCAAAATGGCCATCGCACGGTTCTGTCGCTGCTGA
TTCAGGCTGGTGCCGAGATCGATATCAAGCGGATAGACGGCGCCACGCCC
CTGTGGATAGCAGCCCAGATGGGACAGGATCACATATGCAAGGTGCTGCT
CCAGAACGGCGCCAATGTGGACACCGTGCGTTGCGACGGCGCCACGCCCC
TCTTCAAGGCGGCTCACAAGGGCCATGCCGCCGTAATCACCGTGCTGCTC
AAATACCGACCCAATCTCGGCCAGCTGCCCAATGGAGAGTCCGCACTGCA
TGCCGCCGCCATGTTTGGCCACATGACCGTCTGCA
BS14917.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3104-PA | 966 | CG3104-RA | 1..769 | 17..785 | 3845 | 100 | Plus |
| CG3104-PB | 966 | CG3104-RB | 1..769 | 17..785 | 3845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:56:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3104-RC | 2395 | CG3104-RC | 929..1698 | 16..785 | 3850 | 100 | Plus |
| CG3104-RB | 1933 | CG3104-RB | 467..1236 | 16..785 | 3850 | 100 | Plus |
| CG3104-RA | 2213 | CG3104-RA | 504..1273 | 16..785 | 3850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:56:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2849929..2850279 | 785..435 | 1755 | 100 | Minus |
| 2L | 23513712 | 2L | 2850334..2850633 | 437..138 | 1500 | 100 | Minus |
| 2L | 23513712 | 2L | 2852146..2852259 | 140..27 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:56:27 has no hits.
BS14917.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:54 Download gff for
BS14917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3104-PB | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:45:22 Download gff for
BS14917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3104-RA | 500..1272 | 9..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:54:32 Download gff for
BS14917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3104-RA | 500..1272 | 9..784 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:54:32 Download gff for
BS14917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2849930..2850277 | 437..784 | 100 | <- | Minus |
| 2L | 2850335..2850631 | 140..436 | 100 | <- | Minus |
| 2L | 2852147..2852268 | 18..139 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:22 Download gff for
BS14917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2849930..2850277 | 437..784 | 100 | <- | Minus |
| arm_2L | 2850335..2850631 | 140..436 | 100 | <- | Minus |
| arm_2L | 2852147..2852268 | 18..139 | 96 | | Minus |
BS14917.complete Sequence
998 bp assembled on 2006-11-01
GenBank Submission: FJ637831
> BS14917.complete
GAAGTTATCAGTCGACATGTCGCTTAAGAAGGAGACGCCCTCGGATGTGC
AACTGCACATGGCAGCGATGAGGGGAGATGAGGTGGCTCTTCTTCGCGTT
CTGGACAGTGGCAAAGTGCATGTCGACTGCAAGGATGAGGATGGAACCAC
CCCACTGATTTTGGCTGCTGCCGGAGGTCACACCTACTGCGTGATGGAGC
TGCTCGATCAGGGAGCCGATCCAAACTCGCGTCGCCTAACGGGCACCACG
CCCCTTTTCTTCGCCGCCCAAGGCGGCCACCTGGACGTGGTGAAGATTCT
GATAAAGGCGGGCGCCAGCGTGGACACGCCCTCCGCGGATGGCGGCACGC
CCCTTTTTGTGGCCTGCCAGGGTGGTCACGTGAAGATCGTTCGCGAGCTC
TTGGACTGCGGAGCGAATGTCAATGCGCACATGAAGGATCGAGCCACGCC
GGTTTTTATCTCCGCCCAAAATGGCCATCGCACGGTTCTGTCGCTGCTGA
TTCAGGCTGGTGCCGAGATCGATATCAAGCGGATAGACGGCGCCACGCCC
CTGTGGATAGCAGCCCAGATGGGACAGGATCACATATGCAAGGTGCTGCT
CCAGAACGGCGCCAATGTGGACACCGTGCGTTGCGACGGCGCCACGCCCC
TCTTCAAGGCGGCTCACAAGGGCCATGCCGCCGTAATCACCGTGCTGCTC
AAATACCGACCCAATCTCGGCCAGCTGCCCAATGGAGAGTCCGCACTGCA
TGCCGCCGCCATGTTTGGCCACATGACCGTCTGCAAGCAGCTGGTGGCCG
CCGGCAGCGATGTCCTGCTGAAGAACCACGATGGTCTGACGGCCCTGCAG
TTGGCGCACCAGCAAAAGTACACCTCCATCTGTGATTATCTCCAGGAACG
CATACGGACTATGGTGGCGCGCAGCGCCAAGGCAATGGCCACGTCCGGAG
TGTCGTCCACGGTCAAGACGATGTCGGCGTAAAAGCTTTCTAGACCAT
BS14917.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:56:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3104-RC | 966 | CG3104-PC | 1..966 | 17..982 | 4830 | 100 | Plus |
| CG3104-RB | 966 | CG3104-PB | 1..966 | 17..982 | 4830 | 100 | Plus |
| CG3104-RA | 966 | CG3104-PA | 1..966 | 17..982 | 4830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3104-RC | 2395 | CG3104-RC | 929..1895 | 16..982 | 4835 | 100 | Plus |
| CG3104-RB | 1933 | CG3104-RB | 467..1433 | 16..982 | 4835 | 100 | Plus |
| CG3104-RA | 2213 | CG3104-RA | 504..1470 | 16..982 | 4835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2849732..2850279 | 982..435 | 2740 | 100 | Minus |
| 2L | 23513712 | 2L | 2850334..2850633 | 437..138 | 1500 | 100 | Minus |
| 2L | 23513712 | 2L | 2852146..2852259 | 140..27 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:56:15 has no hits.
BS14917.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:17 Download gff for
BS14917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3104-RB | 1..966 | 17..982 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:59 Download gff for
BS14917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3104-RB | 461..1431 | 9..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:58 Download gff for
BS14917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3104-RA | 505..1468 | 17..980 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:17 Download gff for
BS14917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3104-RB | 461..1431 | 9..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:13 Download gff for
BS14917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3104-RA | 505..1468 | 17..980 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:13 Download gff for
BS14917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2850335..2850631 | 140..436 | 100 | <- | Minus |
| 2L | 2852147..2852268 | 18..139 | 96 | | Minus |
| 2L | 2849734..2850277 | 437..980 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:58 Download gff for
BS14917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2849734..2850277 | 437..980 | 100 | <- | Minus |
| arm_2L | 2850335..2850631 | 140..436 | 100 | <- | Minus |
| arm_2L | 2852147..2852268 | 18..139 | 96 | | Minus |
BS14917.pep Sequence
Translation from 16 to 981
> BS14917.pep
MSLKKETPSDVQLHMAAMRGDEVALLRVLDSGKVHVDCKDEDGTTPLILA
AAGGHTYCVMELLDQGADPNSRRLTGTTPLFFAAQGGHLDVVKILIKAGA
SVDTPSADGGTPLFVACQGGHVKIVRELLDCGANVNAHMKDRATPVFISA
QNGHRTVLSLLIQAGAEIDIKRIDGATPLWIAAQMGQDHICKVLLQNGAN
VDTVRCDGATPLFKAAHKGHAAVITVLLKYRPNLGQLPNGESALHAAAMF
GHMTVCKQLVAAGSDVLLKNHDGLTALQLAHQQKYTSICDYLQERIRTMV
ARSAKAMATSGVSSTVKTMSA*
BS14917.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3104-PC | 321 | CG3104-PC | 1..321 | 1..321 | 1647 | 100 | Plus |
| CG3104-PB | 321 | CG3104-PB | 1..321 | 1..321 | 1647 | 100 | Plus |
| CG3104-PA | 321 | CG3104-PA | 1..321 | 1..321 | 1647 | 100 | Plus |
| Ank2-PN | 1159 | CG34416-PN | 539..785 | 13..259 | 372 | 34.7 | Plus |
| Ank2-PX | 547 | CG42734-PX | 242..525 | 13..296 | 365 | 33.7 | Plus |
| Ank2-PX | 547 | CG42734-PX | 24..306 | 25..308 | 337 | 32.1 | Plus |
| Ank2-PX | 547 | CG42734-PX | 81..417 | 13..320 | 327 | 27.8 | Plus |
| Ank2-PX | 547 | CG42734-PX | 176..477 | 13..314 | 317 | 29 | Plus |
| Ank2-PX | 547 | CG42734-PX | 5..260 | 70..295 | 261 | 28 | Plus |
