Clone BS14920 Report

Search the DGRC for BS14920

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:149
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG31275-RA
Protein status:BS14920.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14920.3prime Sequence

336 bp (336 high quality bases) assembled on 2006-10-13

> BS14920.3prime
ATGGTCTAGAAAGCTTTCATTGAACCACTGTAATGGTGAAGTACTCCTCT
GGGGCCACCAGATACTCGAACTTGCGAGTGCCCAGGCGCATGAAGCAGAG
TTTGTTGGACGGGTCAATGTCCCGGACTACGCTTTGGCAGGTGCTCACCA
GGAGTCCATGTAAGTGCTTCAGGATCGCCTGGGCACTTGTGTTATCGAAG
GATGTTTCGGCCACCGCATTGGCTGTGTTATCGGACACCACATACCCAAT
AGTATGTTCCGATAGAATGCGATCCACGATTGTTCCATTCTGGTGAATCA
CCTTCTCGAGAATGCGATTCATGTCGACTGATAACT

BS14920.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG31275-PB 306 CG31275-RB 1..306 322..17 1530 100 Minus
CG31275-PA 306 CG31275-RA 1..306 322..17 1530 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:46:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG31275-RA 594 CG31275-RA 62..369 322..15 1540 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16750966..16751273 15..322 1540 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:46:07 has no hits.

BS14920.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:56 Download gff for BS14920.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31275-PA 1..306 17..322 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:25:19 Download gff for BS14920.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31275-RB 117..424 15..322 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:31:17 Download gff for BS14920.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31275-RA 62..369 15..322 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:31:17 Download gff for BS14920.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16750966..16751273 15..322 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:25:19 Download gff for BS14920.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12576688..12576995 15..322 100   Plus

BS14920.5prime Sequence

336 bp (336 high quality bases) assembled on 2006-10-13

> BS14920.5prime
GAAGTTATCAGTCGACATGAATCGCATTCTCGAGAAGGTGATTCACCAGA
ATGGAACAATCGTGGATCGCATTCTATCGGAACATACTATTGGGTATGTG
GTGTCCGATAACACAGCCAATGCGGTGGCCGAAACATCCTTCGATAACAC
AAGTGCCCAGGCGATCCTGAAGCACTTACATGGACTCCTGGTGAGCACCT
GCCAAAGCGTAGTCCGGGACATTGACCCGTCCAACAAACTCTGCTTCATG
CGCCTGGGCACTCGCAAGTTCGAGTATCTGGTGGCCCCAGAGGAGTACTT
CACCATTACAGTGGTTCAATGAAAGCTTTCTAGACC

BS14920.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG31275-PB 306 CG31275-RB 1..306 17..322 1530 100 Plus
CG31275-PA 306 CG31275-RA 1..306 17..322 1530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:18:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG31275-RA 594 CG31275-RA 62..369 17..324 1540 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:18:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16750966..16751273 324..17 1540 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:18:09 has no hits.

BS14920.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:57 Download gff for BS14920.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31275-PA 1..306 17..322 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:17:32 Download gff for BS14920.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31275-RB 117..424 17..324 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:15 Download gff for BS14920.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31275-RA 62..369 17..324 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:15 Download gff for BS14920.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16750966..16751273 17..324 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:17:32 Download gff for BS14920.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12576688..12576995 17..324 100   Minus

BS14920.complete Sequence

338 bp assembled on 2006-11-01

GenBank Submission: FJ637832

> BS14920.complete
GAAGTTATCAGTCGACATGAATCGCATTCTCGAGAAGGTGATTCACCAGA
ATGGAACAATCGTGGATCGCATTCTATCGGAACATACTATTGGGTATGTG
GTGTCCGATAACACAGCCAATGCGGTGGCCGAAACATCCTTCGATAACAC
AAGTGCCCAGGCGATCCTGAAGCACTTACATGGACTCCTGGTGAGCACCT
GCCAAAGCGTAGTCCGGGACATTGACCCGTCCAACAAACTCTGCTTCATG
CGCCTGGGCACTCGCAAGTTCGAGTATCTGGTGGCCCCAGAGGAGTACTT
CACCATTACAGTGGTTCAATGAAAGCTTTCTAGACCAT

BS14920.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:03:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG31275-RA 306 CG31275-PA 1..306 17..322 1530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG31275-RA 594 CG31275-RA 62..369 17..324 1540 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16750966..16751273 324..17 1540 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:03:48 has no hits.

BS14920.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:44 Download gff for BS14920.complete
Subject Subject Range Query Range Percent Splice Strand
CG31275-RA 1..306 17..322 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:15:53 Download gff for BS14920.complete
Subject Subject Range Query Range Percent Splice Strand
CG31275-RB 117..424 17..324 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:37 Download gff for BS14920.complete
Subject Subject Range Query Range Percent Splice Strand
CG31275-RB 117..421 17..321 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:45 Download gff for BS14920.complete
Subject Subject Range Query Range Percent Splice Strand
CG31275-RB 117..424 17..324 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:26 Download gff for BS14920.complete
Subject Subject Range Query Range Percent Splice Strand
CG31275-RA 62..366 17..321 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:26 Download gff for BS14920.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16750969..16751273 17..321 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:37 Download gff for BS14920.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12576691..12576995 17..321 100   Minus

BS14920.pep Sequence

Translation from 16 to 321

> BS14920.pep
MNRILEKVIHQNGTIVDRILSEHTIGYVVSDNTANAVAETSFDNTSAQAI
LKHLHGLLVSTCQSVVRDIDPSNKLCFMRLGTRKFEYLVAPEEYFTITVV
Q*

BS14920.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG31275-PA 101 CG31275-PA 1..101 1..101 513 100 Plus
robl62A-PB 104 CG1014-PB 7..103 3..100 243 49 Plus
robl62A-PA 104 CG1014-PA 7..103 3..100 243 49 Plus