Clone Sequence Records
BS14920.3prime Sequence
336 bp (336 high quality bases) assembled on 2006-10-13
> BS14920.3prime
ATGGTCTAGAAAGCTTTCATTGAACCACTGTAATGGTGAAGTACTCCTCT
GGGGCCACCAGATACTCGAACTTGCGAGTGCCCAGGCGCATGAAGCAGAG
TTTGTTGGACGGGTCAATGTCCCGGACTACGCTTTGGCAGGTGCTCACCA
GGAGTCCATGTAAGTGCTTCAGGATCGCCTGGGCACTTGTGTTATCGAAG
GATGTTTCGGCCACCGCATTGGCTGTGTTATCGGACACCACATACCCAAT
AGTATGTTCCGATAGAATGCGATCCACGATTGTTCCATTCTGGTGAATCA
CCTTCTCGAGAATGCGATTCATGTCGACTGATAACT
BS14920.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31275-PB | 306 | CG31275-RB | 1..306 | 322..17 | 1530 | 100 | Minus |
CG31275-PA | 306 | CG31275-RA | 1..306 | 322..17 | 1530 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:46:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31275-RA | 594 | CG31275-RA | 62..369 | 322..15 | 1540 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:46:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16750966..16751273 | 15..322 | 1540 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:46:07 has no hits.
BS14920.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:56 Download gff for
BS14920.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31275-PA | 1..306 | 17..322 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:25:19 Download gff for
BS14920.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31275-RB | 117..424 | 15..322 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:31:17 Download gff for
BS14920.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31275-RA | 62..369 | 15..322 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:31:17 Download gff for
BS14920.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16750966..16751273 | 15..322 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:25:19 Download gff for
BS14920.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12576688..12576995 | 15..322 | 100 | | Plus |
BS14920.5prime Sequence
336 bp (336 high quality bases) assembled on 2006-10-13
> BS14920.5prime
GAAGTTATCAGTCGACATGAATCGCATTCTCGAGAAGGTGATTCACCAGA
ATGGAACAATCGTGGATCGCATTCTATCGGAACATACTATTGGGTATGTG
GTGTCCGATAACACAGCCAATGCGGTGGCCGAAACATCCTTCGATAACAC
AAGTGCCCAGGCGATCCTGAAGCACTTACATGGACTCCTGGTGAGCACCT
GCCAAAGCGTAGTCCGGGACATTGACCCGTCCAACAAACTCTGCTTCATG
CGCCTGGGCACTCGCAAGTTCGAGTATCTGGTGGCCCCAGAGGAGTACTT
CACCATTACAGTGGTTCAATGAAAGCTTTCTAGACC
BS14920.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31275-PB | 306 | CG31275-RB | 1..306 | 17..322 | 1530 | 100 | Plus |
CG31275-PA | 306 | CG31275-RA | 1..306 | 17..322 | 1530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:18:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31275-RA | 594 | CG31275-RA | 62..369 | 17..324 | 1540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:18:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16750966..16751273 | 324..17 | 1540 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:18:09 has no hits.
BS14920.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:57 Download gff for
BS14920.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31275-PA | 1..306 | 17..322 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:17:32 Download gff for
BS14920.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31275-RB | 117..424 | 17..324 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:15 Download gff for
BS14920.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31275-RA | 62..369 | 17..324 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:15 Download gff for
BS14920.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16750966..16751273 | 17..324 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:17:32 Download gff for
BS14920.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12576688..12576995 | 17..324 | 100 | | Minus |
BS14920.complete Sequence
338 bp assembled on 2006-11-01
GenBank Submission: FJ637832
> BS14920.complete
GAAGTTATCAGTCGACATGAATCGCATTCTCGAGAAGGTGATTCACCAGA
ATGGAACAATCGTGGATCGCATTCTATCGGAACATACTATTGGGTATGTG
GTGTCCGATAACACAGCCAATGCGGTGGCCGAAACATCCTTCGATAACAC
AAGTGCCCAGGCGATCCTGAAGCACTTACATGGACTCCTGGTGAGCACCT
GCCAAAGCGTAGTCCGGGACATTGACCCGTCCAACAAACTCTGCTTCATG
CGCCTGGGCACTCGCAAGTTCGAGTATCTGGTGGCCCCAGAGGAGTACTT
CACCATTACAGTGGTTCAATGAAAGCTTTCTAGACCAT
BS14920.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:03:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31275-RA | 306 | CG31275-PA | 1..306 | 17..322 | 1530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31275-RA | 594 | CG31275-RA | 62..369 | 17..324 | 1540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16750966..16751273 | 324..17 | 1540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:03:48 has no hits.
BS14920.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:44 Download gff for
BS14920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31275-RA | 1..306 | 17..322 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:15:53 Download gff for
BS14920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31275-RB | 117..424 | 17..324 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:37 Download gff for
BS14920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31275-RB | 117..421 | 17..321 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:45 Download gff for
BS14920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31275-RB | 117..424 | 17..324 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:26 Download gff for
BS14920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31275-RA | 62..366 | 17..321 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:26 Download gff for
BS14920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16750969..16751273 | 17..321 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:37 Download gff for
BS14920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12576691..12576995 | 17..321 | 100 | | Minus |
BS14920.pep Sequence
Translation from 16 to 321
> BS14920.pep
MNRILEKVIHQNGTIVDRILSEHTIGYVVSDNTANAVAETSFDNTSAQAI
LKHLHGLLVSTCQSVVRDIDPSNKLCFMRLGTRKFEYLVAPEEYFTITVV
Q*
BS14920.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31275-PA | 101 | CG31275-PA | 1..101 | 1..101 | 513 | 100 | Plus |
robl62A-PB | 104 | CG1014-PB | 7..103 | 3..100 | 243 | 49 | Plus |
robl62A-PA | 104 | CG1014-PA | 7..103 | 3..100 | 243 | 49 | Plus |