Clone Sequence Records
BS14921.3prime Sequence
803 bp (785 high quality bases) assembled on 2006-10-13
> BS14921.3prime
ATGGTCTAGAAAGCTTTTAACTGACGCTTTTCGAATTGCGAAAGTCGAAC
AGTTTGGGTATGACATCGCCGCACTTGGCGGATATCTTGATATCCGCCAG
GTGATCGGCGCGCGTTTCGCCAATATTAACAATGCCCACCGGTAGCTTGA
GGTCCTTGGTCTGCAGGACAACGCGGTAGCCGGAGAAGACCAGGAGACTG
GACCCGAGGACAAGCAGGCCATCGCTATTGTACACCATGCCGGCAATCTG
ATCCACTCGTGGCCGAGGCACAGAATCTCCGAAGAAGACAATTTCCGGCT
TCAAGTCGCCGCCGCACTGCGTACACTCGGGTATCCGGAAGTTCTCGATG
TACTCCAGCGGTATCTCTACATCGCCATCGGGCCGGATCATGTCGGGGGC
ATCTTTGAAGGCCGGATTTAGCGACGCCAGTATGCTCTGGAACTCGTGAC
GATCGATCCGGTACTCGCATGACAGGCACTTGACCACATAGCCACTGCCA
TGAACCTCCACAACATTTCGGCTGCCCGCCTTCGTGTGCAGCCGGTCCAC
GTTCTGGGTGACCACCGCCTGGACCCGCTCCTCCCGCTCGAATCTGGCCA
GCGCGTGATGCGTGGCATTGGGCTGTGTGGCAGAAAACTTGGGCCAGCCC
ACAAAGTTCCTGGCCCAGTACCGCTTGCGCACCGCCGACGACTTGACGAA
CTCCATGTGCTGGACGGGCTTGTGGTTGGAGCGGGCGTAGAGGCCCACGC
CTTCGGAACGGTAATCGGGAATCCCCGATTCCGTCGAGATGCCAGCGCCC
GTG
BS14921.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3187-PC | 939 | Sirt4-RC | 153..939 | 803..17 | 3935 | 100 | Minus |
| CG3187-PA | 690 | Sirt4-RA | 1..690 | 706..17 | 3450 | 100 | Minus |
| CG3187-PB | 690 | Sirt4-RB | 1..690 | 706..17 | 3450 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:56:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sirt4-RC | 1112 | CG3187-RC | 225..1011 | 803..17 | 3935 | 100 | Minus |
| Sirt4-RB | 1253 | CG3187-RB | 394..1152 | 775..17 | 3795 | 100 | Minus |
| Sirt4-RA | 1198 | CG3187-RA | 340..1097 | 774..17 | 3790 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:56:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5664729..5665487 | 17..775 | 3795 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:56:41 has no hits.
BS14921.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:57 Download gff for
BS14921.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3187-PC | 153..939 | 17..803 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:45:27 Download gff for
BS14921.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sirt4-RC | 225..1015 | 12..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:55:21 Download gff for
BS14921.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sirt4-RC | 225..1015 | 12..803 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:55:21 Download gff for
BS14921.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5664725..5665486 | 12..774 | 99 | <- | Plus |
| X | 5665688..5665716 | 775..803 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:27 Download gff for
BS14921.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5558758..5559519 | 12..774 | 99 | <- | Plus |
| arm_X | 5559721..5559749 | 775..803 | 100 | | Plus |
BS14921.5prime Sequence
902 bp (716 high quality bases) assembled on 2006-10-13
> BS14921.5prime
GAAGTTATCAGTCGACATGCGTGTGGGCCAGCTGCTCCGCTTCCGGAGCA
CCAGCTTGCGCAGCTCCACCGCCAGGCAGGAGTACGTGCCGCATCACAAG
CCCGTCGTGGAGGACGACATCAAACGGCTGGAGGACTTTCTCCTGTCCAA
ACCGAATGTTTTGGTTCTCACGGGCGCTGGCATCTCGACGGAATCGGGGA
TTCCCGATTACCGTTCCGAAGGCGTGGGCCTCTACGCCCGCTCCAACCAC
AAGCCCGTCCAGCACATGGAGTTCGTCAAGTCGTCGGCGGTGCGCAAGCG
GTACTGGGCCAGGAACTTTGTGGGCTGGCCCAAGTTTTCTGCCACACAGC
CCAATGCCACGCATCACGCGCTGGCCAGATTCGAGCGGGAGGAGCGGGTC
CAGGCGGTGGTCACCCAGAACGTGGACCGGCTGCACACGAAGGCGGGCAG
CCGAAATGTTGTGGAGGTTCATGGCAGTGGCTATGTGGTCAAGTGCCTGT
CATGCGAGTACCGGATCGATCGTCACGAGTTCCAGAGCATACTGGCGTCG
CTAAATCCGGCCTTCAAAGATGCCCCCGACATGATCCGGCCCGATGGCGA
TGTAGAGATACCGCTGGAGTACATCGAGAACTTCCGGATACCCGAGTGTA
CGCAGTGCGGCGGCGACTTGAAGCCGGAAATTGTCTTCTTCGGAGATTCT
GTGCCTCGGCCACGAGTGGATCAGATTGCCGGCATGGTGTACAATAGCGA
TGGCCTGCTTGTCCTCGGGTCCAGTCTCCTGGTCTTCTCCGGCTACGGCG
TTGTCCTGCAGACCAAGGACCTCAAGCTACCGGGGGGCATTGTTAATATT
GGCGAAACGCGCGCCGATCACCTGGCGGATATCAAGATATCCGCCAAGTG
CG
BS14921.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3187-PC | 939 | Sirt4-RC | 1..886 | 17..902 | 4380 | 99.7 | Plus |
| CG3187-PA | 690 | Sirt4-RA | 1..637 | 266..902 | 3135 | 99.6 | Plus |
| CG3187-PB | 690 | Sirt4-RB | 1..637 | 266..902 | 3135 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:15:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sirt4-RC | 1112 | CG3187-RC | 73..958 | 17..902 | 4400 | 99.8 | Plus |
| Sirt4-RB | 1253 | CG3187-RB | 394..1099 | 197..902 | 3500 | 99.7 | Plus |
| Sirt4-RA | 1198 | CG3187-RA | 340..1044 | 198..902 | 3495 | 99.7 | Plus |
| Sirt4-RB | 1253 | CG3187-RB | 73..253 | 17..197 | 905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:15:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5664782..5665487 | 902..197 | 3500 | 99.7 | Minus |
| X | 23542271 | X | 5665687..5665868 | 198..17 | 910 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:15:23 has no hits.
BS14921.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:57 Download gff for
BS14921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3187-PC | 1..886 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:04:47 Download gff for
BS14921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sirt4-RC | 73..958 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:32:25 Download gff for
BS14921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sirt4-RC | 73..958 | 17..902 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:32:25 Download gff for
BS14921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5664782..5665486 | 198..902 | 99 | <- | Minus |
| X | 5665688..5665868 | 17..197 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:04:47 Download gff for
BS14921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5558815..5559519 | 198..902 | 99 | <- | Minus |
| arm_X | 5559721..5559901 | 17..197 | 100 | | Minus |
BS14921.complete Sequence
971 bp assembled on 2006-11-01
GenBank Submission: FJ637833
> BS14921.complete
GAAGTTATCAGTCGACATGCGTGTGGGCCAGCTGCTCCGCTTCCGGAGCA
CCAGCTTGCGCAGCTCCACCGCCAGGCAGGAGTACGTGCCGCATCACAAG
CCCGTCGTGGAGGACGACATCAAACGGCTGGAGGACTTTCTCCTGTCCAA
ACCGAATGTTTTGGTTCTCACGGGCGCTGGCATCTCGACGGAATCGGGGA
TTCCCGATTACCGTTCCGAAGGCGTGGGCCTCTACGCCCGCTCCAACCAC
AAGCCCGTCCAGCACATGGAGTTCGTCAAGTCGTCGGCGGTGCGCAAGCG
GTACTGGGCCAGGAACTTTGTGGGCTGGCCCAAGTTTTCTGCCACACAGC
CCAATGCCACGCATCACGCGCTGGCCAGATTCGAGCGGGAGGAGCGGGTC
CAGGCGGTGGTCACCCAGAACGTGGACCGGCTGCACACGAAGGCGGGCAG
CCGAAATGTTGTGGAGGTTCATGGCAGTGGCTATGTGGTCAAGTGCCTGT
CATGCGAGTACCGGATCGATCGTCACGAGTTCCAGAGCATACTGGCGTCG
CTAAATCCGGCCTTCAAAGATGCCCCCGACATGATCCGGCCCGATGGCGA
TGTAGAGATACCGCTGGAGTACATCGAGAACTTCCGGATACCCGAGTGTA
CGCAGTGCGGCGGCGACTTGAAGCCGGAAATTGTCTTCTTCGGAGATTCT
GTGCCTCGGCCACGAGTGGATCAGATTGCCGGCATGGTGTACAATAGCGA
TGGCCTGCTTGTCCTCGGGTCCAGTCTCCTGGTCTTCTCCGGCTACCGCG
TTGTCCTGCAGACCAAGGACCTCAAGCTACCGGTGGGCATTGTTAATATT
GGCGAAACGCGCGCCGATCACCTGGCGGATATCAAGATATCCGCCAAGTG
CGGCGATGTCATACCCAAACTGTTCGACTTTCGCAATTCGAAAAGCGTCA
GTTAAAAGCTTTCTAGACCAT
BS14921.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:11:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sirt4-RC | 939 | CG3187-PC | 1..939 | 17..955 | 4695 | 100 | Plus |
| Sirt4-RB | 690 | CG3187-PB | 1..690 | 266..955 | 3450 | 100 | Plus |
| Sirt4-RA | 690 | CG3187-PA | 1..690 | 266..955 | 3450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sirt4-RC | 1112 | CG3187-RC | 73..1011 | 17..955 | 4695 | 100 | Plus |
| Sirt4-RB | 1253 | CG3187-RB | 394..1152 | 197..955 | 3795 | 100 | Plus |
| Sirt4-RA | 1198 | CG3187-RA | 340..1097 | 198..955 | 3790 | 100 | Plus |
| Sirt4-RB | 1253 | CG3187-RB | 73..253 | 17..197 | 905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5664729..5665487 | 955..197 | 3795 | 100 | Minus |
| X | 23542271 | X | 5665687..5665868 | 198..17 | 910 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:11:37 has no hits.
BS14921.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:18 Download gff for
BS14921.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sirt4-RC | 1..939 | 17..955 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:01 Download gff for
BS14921.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sirt4-RC | 102..1044 | 17..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:10 Download gff for
BS14921.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sirt4-RC | 73..1009 | 17..953 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:18 Download gff for
BS14921.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sirt4-RC | 102..1044 | 17..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:30 Download gff for
BS14921.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sirt4-RC | 73..1009 | 17..953 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:30 Download gff for
BS14921.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5664731..5665486 | 198..953 | 100 | <- | Minus |
| X | 5665688..5665868 | 17..197 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:10 Download gff for
BS14921.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5558764..5559519 | 198..953 | 100 | <- | Minus |
| arm_X | 5559721..5559901 | 17..197 | 100 | | Minus |
BS14921.pep Sequence
Translation from 16 to 954
> BS14921.pep
MRVGQLLRFRSTSLRSSTARQEYVPHHKPVVEDDIKRLEDFLLSKPNVLV
LTGAGISTESGIPDYRSEGVGLYARSNHKPVQHMEFVKSSAVRKRYWARN
FVGWPKFSATQPNATHHALARFEREERVQAVVTQNVDRLHTKAGSRNVVE
VHGSGYVVKCLSCEYRIDRHEFQSILASLNPAFKDAPDMIRPDGDVEIPL
EYIENFRIPECTQCGGDLKPEIVFFGDSVPRPRVDQIAGMVYNSDGLLVL
GSSLLVFSGYRVVLQTKDLKLPVGIVNIGETRADHLADIKISAKCGDVIP
KLFDFRNSKSVS*
BS14921.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sirt4-PC | 312 | CG3187-PC | 1..312 | 1..312 | 1620 | 100 | Plus |
| Sirt4-PB | 229 | CG3187-PB | 1..229 | 84..312 | 1195 | 100 | Plus |
| Sirt4-PA | 229 | CG3187-PA | 1..229 | 84..312 | 1195 | 100 | Plus |
| Sir2-PA | 823 | CG5216-PA | 224..432 | 48..256 | 196 | 29.6 | Plus |
