Clone Sequence Records
BS14924.3prime Sequence
573 bp (573 high quality bases) assembled on 2006-10-13
> BS14924.3prime
ATGGTCTAGAAAGCTTTCAGAGGTTGGTGAGGGCATTAGCCAGATCGCCT
AGGCCAGCATTTAGCTGCTTTATATAAGGGGCAGCTGCATCTGCAGCAGC
GGCAATAGTCTTCGCACTCACGGCTCCTCCTTTGGCTATAATAGAAGCAC
CATTGGACGAAAGACTGCGAGCCTGAGGTGCGTTCGTCATCTGAACACTA
AGACTGGTAATGGCATTAGCCAAATCTCCAAGACCAGTGCCCACTCCACC
CAGAACATTGCCCAAGAGATTGGTGGCCTCGGGTTGCATATAATCGTTAT
CCACTCTTAAACTAGTAAGGGCGTTAGCCAGATCACCCAAGGCGTTTCCC
ATGTCGCTTAGAATGTTCAAAGTGGTTGGCTGGACAAAATCCGATTGAGA
GCTGGCCACAGCGTTTTCCAGTTGATGGATGACCTTCTCCCCAGCAACAG
CCACTTGGGACACATCTCCCATCAGGGACCCAATGCTGAGAGTTCCAGCT
CTTGAATTTTGGACCATCAAAACGATGGTGAAAAGGGTTAGAATTGTAAA
AGACTGCATGTCGACTGATAACT
BS14924.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18404-PA | 543 | CG18404-RA | 1..543 | 559..17 | 2715 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:15:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18404-RA | 607 | CG18404-RA | 9..554 | 561..16 | 2730 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:15:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30253190..30253425 | 561..326 | 1180 | 100 | Minus |
3R | 32079331 | 3R | 30253485..30253592 | 325..218 | 540 | 100 | Minus |
3R | 32079331 | 3R | 30253873..30253959 | 124..38 | 435 | 100 | Minus |
3R | 32079331 | 3R | 30253660..30253719 | 217..158 | 300 | 100 | Minus |
3R | 32079331 | 3R | 30253774..30253812 | 162..124 | 180 | 97.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:15:32 has no hits.
BS14924.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:59 Download gff for
BS14924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18404-PA | 1..543 | 17..559 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:04:52 Download gff for
BS14924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18404-RA | 4..565 | 6..567 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:32:52 Download gff for
BS14924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18404-RA | 4..565 | 6..567 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:32:52 Download gff for
BS14924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30253185..30253425 | 326..567 | 98 | -> | Minus |
3R | 30253485..30253592 | 218..325 | 100 | -> | Minus |
3R | 30253660..30253719 | 158..217 | 100 | -> | Minus |
3R | 30253779..30253811 | 125..157 | 100 | -> | Minus |
3R | 30253873..30253959 | 38..124 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:04:52 Download gff for
BS14924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26078907..26079147 | 326..567 | 98 | -> | Minus |
arm_3R | 26079207..26079314 | 218..325 | 100 | -> | Minus |
arm_3R | 26079382..26079441 | 158..217 | 100 | -> | Minus |
arm_3R | 26079501..26079533 | 125..157 | 100 | -> | Minus |
arm_3R | 26079595..26079681 | 38..124 | 100 | -> | Minus |
BS14924.5prime Sequence
573 bp (573 high quality bases) assembled on 2006-10-13
> BS14924.5prime
GAAGTTATCAGTCGACATGCAGTCTTTTACAATTCTAACCCTTTTCACCA
TCGTTTTGATGGTCCAAAATTCAAGAGCTGGAACTCTCAGCATTGGGTCC
CTGATGGGAGATGTGTCCCAAGTGGCTGTTGCTGGGGAGAAGGTCATCCA
TCAACTGGAAAACGCTGTGGCCAGCTCTCAATCGGATTTTGTCCAGCCAA
CCACTTTGAACATTCTAAGCGACATGGGAAACGCCTTGGGTGATCTGGCT
AACGCCCTTACTAGTTTAAGAGTGGATAACGATTATATGCAACCCGAGGC
CACCAATCTCTTGGGCAATGTTCTGGGTGGAGTGGGCACTGGTCTTGGAG
ATTTGGCTAATGCCATTACCAGTCTTAGTGTTCAGATGACGAACGCACCT
CAGGCTCGCAGTCTTTCGTCCAATGGTGCTTCTATTATAGCCAAAGGAGG
AGCCGTGAGTGCGAAGACTATTGCCGCTGCTGCAGATGCAGCTGCCCCTT
ATATAAAGCAGCTAAATGCTGGCCTAGGCGATCTGGCTAATGCCCTCACC
AACCTCTGAAAGCTTTCTAGACC
BS14924.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18404-PA | 543 | CG18404-RA | 1..543 | 17..559 | 2715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:56:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18404-RA | 607 | CG18404-RA | 9..554 | 15..560 | 2730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:56:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30253190..30253425 | 15..250 | 1180 | 100 | Plus |
3R | 32079331 | 3R | 30253485..30253592 | 251..358 | 540 | 100 | Plus |
3R | 32079331 | 3R | 30253873..30253959 | 452..538 | 435 | 100 | Plus |
3R | 32079331 | 3R | 30253660..30253719 | 359..418 | 300 | 100 | Plus |
3R | 32079331 | 3R | 30253774..30253812 | 414..452 | 180 | 97.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:56:48 has no hits.
BS14924.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:59 Download gff for
BS14924.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18404-PA | 1..543 | 17..559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:45:29 Download gff for
BS14924.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18404-RA | 4..565 | 9..570 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:55:47 Download gff for
BS14924.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18404-RA | 4..565 | 9..570 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:55:47 Download gff for
BS14924.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30253185..30253425 | 9..250 | 98 | -> | Plus |
3R | 30253485..30253592 | 251..358 | 100 | -> | Plus |
3R | 30253660..30253719 | 359..418 | 100 | -> | Plus |
3R | 30253779..30253811 | 419..451 | 100 | -> | Plus |
3R | 30253873..30253959 | 452..538 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:29 Download gff for
BS14924.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26078907..26079147 | 9..250 | 98 | -> | Plus |
arm_3R | 26079207..26079314 | 251..358 | 100 | -> | Plus |
arm_3R | 26079382..26079441 | 359..418 | 100 | -> | Plus |
arm_3R | 26079501..26079533 | 419..451 | 100 | -> | Plus |
arm_3R | 26079595..26079681 | 452..538 | 100 | -> | Plus |
BS14924.complete Sequence
575 bp assembled on 2006-11-01
GenBank Submission: FJ637834
> BS14924.complete
GAAGTTATCAGTCGACATGCAGTCTTTTACAATTCTAACCCTTTTCACCA
TCGTTTTGATGGTCCAAAATTCAAGAGCTGGAACTCTCAGCATTGGGTCC
CTGATGGGAGATGTGTCCCAAGTGGCTGTTGCTGGGGAGAAGGTCATCCA
TCAACTGGAAAACGCTGTGGCCAGCTCTCAATCGGATTTTGTCCAGCCAA
CCACTTTGAACATTCTAAGCGACATGGGAAACGCCTTGGGTGATCTGGCT
AACGCCCTTACTAGTTTAAGAGTGGATAACGATTATATGCAACCCGAGGC
CACCAATCTCTTGGGCAATGTTCTGGGTGGAGTGGGCACTGGTCTTGGAG
ATTTGGCTAATGCCATTACCAGTCTTAGTGTTCAGATGACGAACGCACCT
CAGGCTCGCAGTCTTTCGTCCAATGGTGCTTCTATTATAGCCAAAGGAGG
AGCCGTGAGTGCGAAGACTATTGCCGCTGCTGCAGATGCAGCTGCCCCTT
ATATAAAGCAGCTAAATGCTGGCCTAGGCGATCTGGCTAATGCCCTCACC
AACCTCTGAAAGCTTTCTAGACCAT
BS14924.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:51:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18404-RA | 543 | CG18404-PA | 1..543 | 17..559 | 2715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18404-RA | 607 | CG18404-RA | 9..554 | 15..560 | 2730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30253190..30253425 | 15..250 | 1180 | 100 | Plus |
3R | 32079331 | 3R | 30253485..30253592 | 251..358 | 540 | 100 | Plus |
3R | 32079331 | 3R | 30253873..30253959 | 452..538 | 435 | 100 | Plus |
3R | 32079331 | 3R | 30253660..30253719 | 359..418 | 300 | 100 | Plus |
3R | 32079331 | 3R | 30253774..30253812 | 414..452 | 180 | 97.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:51:38 has no hits.
BS14924.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:19 Download gff for
BS14924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18404-RA | 1..543 | 17..559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:03 Download gff for
BS14924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18404-RA | 4..565 | 9..570 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:20 Download gff for
BS14924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18404-RA | 11..552 | 17..558 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:20 Download gff for
BS14924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18404-RA | 4..565 | 9..570 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:07 Download gff for
BS14924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18404-RA | 11..552 | 17..558 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:07 Download gff for
BS14924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30253192..30253425 | 17..250 | 100 | -> | Plus |
3R | 30253485..30253592 | 251..358 | 100 | -> | Plus |
3R | 30253660..30253719 | 359..418 | 100 | -> | Plus |
3R | 30253779..30253811 | 419..451 | 100 | -> | Plus |
3R | 30253873..30253959 | 452..538 | 100 | -> | Plus |
3R | 30254023..30254042 | 539..558 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:20 Download gff for
BS14924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26079207..26079314 | 251..358 | 100 | -> | Plus |
arm_3R | 26079382..26079441 | 359..418 | 100 | -> | Plus |
arm_3R | 26079501..26079533 | 419..451 | 100 | -> | Plus |
arm_3R | 26079595..26079681 | 452..538 | 100 | -> | Plus |
arm_3R | 26079745..26079764 | 539..558 | 100 | | Plus |
arm_3R | 26078914..26079147 | 17..250 | 100 | -> | Plus |
BS14924.pep Sequence
Translation from 16 to 558
> BS14924.pep
MQSFTILTLFTIVLMVQNSRAGTLSIGSLMGDVSQVAVAGEKVIHQLENA
VASSQSDFVQPTTLNILSDMGNALGDLANALTSLRVDNDYMQPEATNLLG
NVLGGVGTGLGDLANAITSLSVQMTNAPQARSLSSNGASIIAKGGAVSAK
TIAAAADAAAPYIKQLNAGLGDLANALTNL*
BS14924.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18404-PA | 180 | CG18404-PA | 1..180 | 1..180 | 867 | 100 | Plus |