Clone BS14924 Report

Search the DGRC for BS14924

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:149
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG18404-RA
Protein status:BS14924.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14924.3prime Sequence

573 bp (573 high quality bases) assembled on 2006-10-13

> BS14924.3prime
ATGGTCTAGAAAGCTTTCAGAGGTTGGTGAGGGCATTAGCCAGATCGCCT
AGGCCAGCATTTAGCTGCTTTATATAAGGGGCAGCTGCATCTGCAGCAGC
GGCAATAGTCTTCGCACTCACGGCTCCTCCTTTGGCTATAATAGAAGCAC
CATTGGACGAAAGACTGCGAGCCTGAGGTGCGTTCGTCATCTGAACACTA
AGACTGGTAATGGCATTAGCCAAATCTCCAAGACCAGTGCCCACTCCACC
CAGAACATTGCCCAAGAGATTGGTGGCCTCGGGTTGCATATAATCGTTAT
CCACTCTTAAACTAGTAAGGGCGTTAGCCAGATCACCCAAGGCGTTTCCC
ATGTCGCTTAGAATGTTCAAAGTGGTTGGCTGGACAAAATCCGATTGAGA
GCTGGCCACAGCGTTTTCCAGTTGATGGATGACCTTCTCCCCAGCAACAG
CCACTTGGGACACATCTCCCATCAGGGACCCAATGCTGAGAGTTCCAGCT
CTTGAATTTTGGACCATCAAAACGATGGTGAAAAGGGTTAGAATTGTAAA
AGACTGCATGTCGACTGATAACT

BS14924.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG18404-PA 543 CG18404-RA 1..543 559..17 2715 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:15:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG18404-RA 607 CG18404-RA 9..554 561..16 2730 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:15:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30253190..30253425 561..326 1180 100 Minus
3R 32079331 3R 30253485..30253592 325..218 540 100 Minus
3R 32079331 3R 30253873..30253959 124..38 435 100 Minus
3R 32079331 3R 30253660..30253719 217..158 300 100 Minus
3R 32079331 3R 30253774..30253812 162..124 180 97.4 Minus
Blast to na_te.dros performed on 2015-02-11 09:15:32 has no hits.

BS14924.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:59 Download gff for BS14924.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18404-PA 1..543 17..559 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:04:52 Download gff for BS14924.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18404-RA 4..565 6..567 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:32:52 Download gff for BS14924.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18404-RA 4..565 6..567 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:32:52 Download gff for BS14924.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30253185..30253425 326..567 98 -> Minus
3R 30253485..30253592 218..325 100 -> Minus
3R 30253660..30253719 158..217 100 -> Minus
3R 30253779..30253811 125..157 100 -> Minus
3R 30253873..30253959 38..124 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:04:52 Download gff for BS14924.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26078907..26079147 326..567 98 -> Minus
arm_3R 26079207..26079314 218..325 100 -> Minus
arm_3R 26079382..26079441 158..217 100 -> Minus
arm_3R 26079501..26079533 125..157 100 -> Minus
arm_3R 26079595..26079681 38..124 100 -> Minus

BS14924.5prime Sequence

573 bp (573 high quality bases) assembled on 2006-10-13

> BS14924.5prime
GAAGTTATCAGTCGACATGCAGTCTTTTACAATTCTAACCCTTTTCACCA
TCGTTTTGATGGTCCAAAATTCAAGAGCTGGAACTCTCAGCATTGGGTCC
CTGATGGGAGATGTGTCCCAAGTGGCTGTTGCTGGGGAGAAGGTCATCCA
TCAACTGGAAAACGCTGTGGCCAGCTCTCAATCGGATTTTGTCCAGCCAA
CCACTTTGAACATTCTAAGCGACATGGGAAACGCCTTGGGTGATCTGGCT
AACGCCCTTACTAGTTTAAGAGTGGATAACGATTATATGCAACCCGAGGC
CACCAATCTCTTGGGCAATGTTCTGGGTGGAGTGGGCACTGGTCTTGGAG
ATTTGGCTAATGCCATTACCAGTCTTAGTGTTCAGATGACGAACGCACCT
CAGGCTCGCAGTCTTTCGTCCAATGGTGCTTCTATTATAGCCAAAGGAGG
AGCCGTGAGTGCGAAGACTATTGCCGCTGCTGCAGATGCAGCTGCCCCTT
ATATAAAGCAGCTAAATGCTGGCCTAGGCGATCTGGCTAATGCCCTCACC
AACCTCTGAAAGCTTTCTAGACC

BS14924.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG18404-PA 543 CG18404-RA 1..543 17..559 2715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG18404-RA 607 CG18404-RA 9..554 15..560 2730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30253190..30253425 15..250 1180 100 Plus
3R 32079331 3R 30253485..30253592 251..358 540 100 Plus
3R 32079331 3R 30253873..30253959 452..538 435 100 Plus
3R 32079331 3R 30253660..30253719 359..418 300 100 Plus
3R 32079331 3R 30253774..30253812 414..452 180 97.4 Plus
Blast to na_te.dros performed on 2015-02-12 17:56:48 has no hits.

BS14924.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:57:59 Download gff for BS14924.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18404-PA 1..543 17..559 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:45:29 Download gff for BS14924.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18404-RA 4..565 9..570 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:55:47 Download gff for BS14924.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18404-RA 4..565 9..570 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:55:47 Download gff for BS14924.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30253185..30253425 9..250 98 -> Plus
3R 30253485..30253592 251..358 100 -> Plus
3R 30253660..30253719 359..418 100 -> Plus
3R 30253779..30253811 419..451 100 -> Plus
3R 30253873..30253959 452..538 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:29 Download gff for BS14924.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26078907..26079147 9..250 98 -> Plus
arm_3R 26079207..26079314 251..358 100 -> Plus
arm_3R 26079382..26079441 359..418 100 -> Plus
arm_3R 26079501..26079533 419..451 100 -> Plus
arm_3R 26079595..26079681 452..538 100 -> Plus

BS14924.complete Sequence

575 bp assembled on 2006-11-01

GenBank Submission: FJ637834

> BS14924.complete
GAAGTTATCAGTCGACATGCAGTCTTTTACAATTCTAACCCTTTTCACCA
TCGTTTTGATGGTCCAAAATTCAAGAGCTGGAACTCTCAGCATTGGGTCC
CTGATGGGAGATGTGTCCCAAGTGGCTGTTGCTGGGGAGAAGGTCATCCA
TCAACTGGAAAACGCTGTGGCCAGCTCTCAATCGGATTTTGTCCAGCCAA
CCACTTTGAACATTCTAAGCGACATGGGAAACGCCTTGGGTGATCTGGCT
AACGCCCTTACTAGTTTAAGAGTGGATAACGATTATATGCAACCCGAGGC
CACCAATCTCTTGGGCAATGTTCTGGGTGGAGTGGGCACTGGTCTTGGAG
ATTTGGCTAATGCCATTACCAGTCTTAGTGTTCAGATGACGAACGCACCT
CAGGCTCGCAGTCTTTCGTCCAATGGTGCTTCTATTATAGCCAAAGGAGG
AGCCGTGAGTGCGAAGACTATTGCCGCTGCTGCAGATGCAGCTGCCCCTT
ATATAAAGCAGCTAAATGCTGGCCTAGGCGATCTGGCTAATGCCCTCACC
AACCTCTGAAAGCTTTCTAGACCAT

BS14924.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG18404-RA 543 CG18404-PA 1..543 17..559 2715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG18404-RA 607 CG18404-RA 9..554 15..560 2730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30253190..30253425 15..250 1180 100 Plus
3R 32079331 3R 30253485..30253592 251..358 540 100 Plus
3R 32079331 3R 30253873..30253959 452..538 435 100 Plus
3R 32079331 3R 30253660..30253719 359..418 300 100 Plus
3R 32079331 3R 30253774..30253812 414..452 180 97.4 Plus
Blast to na_te.dros performed on 2014-11-27 07:51:38 has no hits.

BS14924.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:19 Download gff for BS14924.complete
Subject Subject Range Query Range Percent Splice Strand
CG18404-RA 1..543 17..559 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:03 Download gff for BS14924.complete
Subject Subject Range Query Range Percent Splice Strand
CG18404-RA 4..565 9..570 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:20 Download gff for BS14924.complete
Subject Subject Range Query Range Percent Splice Strand
CG18404-RA 11..552 17..558 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:20 Download gff for BS14924.complete
Subject Subject Range Query Range Percent Splice Strand
CG18404-RA 4..565 9..570 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:07 Download gff for BS14924.complete
Subject Subject Range Query Range Percent Splice Strand
CG18404-RA 11..552 17..558 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:07 Download gff for BS14924.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30253192..30253425 17..250 100 -> Plus
3R 30253485..30253592 251..358 100 -> Plus
3R 30253660..30253719 359..418 100 -> Plus
3R 30253779..30253811 419..451 100 -> Plus
3R 30253873..30253959 452..538 100 -> Plus
3R 30254023..30254042 539..558 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:20 Download gff for BS14924.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26079207..26079314 251..358 100 -> Plus
arm_3R 26079382..26079441 359..418 100 -> Plus
arm_3R 26079501..26079533 419..451 100 -> Plus
arm_3R 26079595..26079681 452..538 100 -> Plus
arm_3R 26079745..26079764 539..558 100   Plus
arm_3R 26078914..26079147 17..250 100 -> Plus

BS14924.pep Sequence

Translation from 16 to 558

> BS14924.pep
MQSFTILTLFTIVLMVQNSRAGTLSIGSLMGDVSQVAVAGEKVIHQLENA
VASSQSDFVQPTTLNILSDMGNALGDLANALTSLRVDNDYMQPEATNLLG
NVLGGVGTGLGDLANAITSLSVQMTNAPQARSLSSNGASIIAKGGAVSAK
TIAAAADAAAPYIKQLNAGLGDLANALTNL*

BS14924.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:28:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG18404-PA 180 CG18404-PA 1..180 1..180 867 100 Plus