Clone Sequence Records
BS14927.3prime Sequence
816 bp (771 high quality bases) assembled on 2006-10-13
> BS14927.3prime
ATGGTCTAGAAAGCTTTTAGACGCTCATGGGCGTGGGATACTCCACGTGA
CCTATGAACAGAACTGAGGCGGGTGTGCGGACGGCGAAGACGAATGGCCG
GTTGGCGACGAACTCCGTGGGCTTGGGAGGCAGCGAAAGGGGTACGAACT
TGGCATAGGAAGCTGCCGAGGCCTCTGTGCCCGCCTCGCCCACATTGATG
TAGGCCTTCTGCAGGATCTTGCTCACGCGCACCGGCTGATCCATCAACTT
GGTCACCTGCGAGTTGGGCGTGAACATCTGGTGGACTCCCAGGTTCTTTA
GCGGCTCGGTCATGTCCTGCTCGAACTCGAATTGGAACTTGGGCAGGCGC
ACAGCGACCGACTGGCGGCGCAGGCGGTGGGCAACGCGGTTGAGATCGAA
CTCCGGCCGGGACAGCTGCTGCAGCATTTTGCCCAGTCCGGTGGTCTCAT
TGGGCAGCAGGATTAGCATGCTGGTGGCGCTGTCCTTGTAGGCCAGTTCC
AAGGCGGTGGCGCCCAGCTCAGGCAGCTCGGCCAGGCCGTACACATCGTC
GTTGAACATCATGGCCACCTTGGAAATTCTGCCGTTGGTGTGCTGAAAGT
CGTAGGGTGATGTGTCCATGGTGGCGAATTCGTGCTCCCAACGACCCTGG
AAGTAGACTGCATTCACAAGGAGCGCCTGCGTCTGTGGGTCAACGTCGGT
CGGTGTGACCAGGTCCCGGATCTTGTTCCGCGTCGTGTCCATCACCCAGG
CGTTGATCTTGGCTGCCGTGTCTTTGGCGTTCTGCATGTCGACAGCCTCC
GTGCCGGCGCTGAAAT
BS14927.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1857-PA | 1431 | nec-RA | 632..1431 | 816..17 | 4000 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:39:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nec-RA | 1633 | CG1857-RA | 726..1527 | 816..15 | 4010 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:39:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7156791..7157450 | 157..816 | 3300 | 100 | Plus |
| 2R | 25286936 | 2R | 7156583..7156724 | 15..156 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:39:39 has no hits.
BS14927.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:01 Download gff for
BS14927.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1857-PA | 632..1431 | 17..816 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:58 Download gff for
BS14927.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nec-RA | 726..1527 | 15..816 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:28:10 Download gff for
BS14927.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nec-RA | 726..1527 | 15..816 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:28:10 Download gff for
BS14927.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7156583..7156724 | 15..156 | 100 | <- | Plus |
| 2R | 7156791..7157450 | 157..816 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:58 Download gff for
BS14927.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3044088..3044229 | 15..156 | 100 | <- | Plus |
| arm_2R | 3044296..3044955 | 157..816 | 100 | | Plus |
BS14927.5prime Sequence
834 bp (783 high quality bases) assembled on 2006-10-13
> BS14927.5prime
GAAGTTATCAGTCGACATGGCGAGCAAAGTCTCGATCCTTCTCCTGCTAA
CCGTCCATCTTCTGGCTGCTCAGACCTTCGCCCAGGAGCTCATCGCTTGG
CAACGGCAACAACAACAGCAGCAACAGCAGCAACTGCAGCTACAGCAGCA
ACTGCTGCTGCAGCAGCAACAACACCAACGTAACCCAAGACCGGAGCTGG
GCCTCCGTTCCCTGCCCGGAAACCCGTGGACCCAGAACAATCAGGAAGCC
ATAAGCGATGTGGTGGCGGTGGACCTAACCAAACGTGAGCCGGTCACTCC
GCCACCCAATCGCCCGCCGCCCGTCTTCAGCTACATGGACCGCTTCAGCT
CCGAGCTCTTCAAGGAGATCATTAAGTCGCAAAGTCAGCAGAACGTGGTG
TTCTCGCCCTTCTCCGTCCACGCGCTGCTGGCCCTGATCTACGGGGCCTC
GGACGGAAAAACGTTCCGGGAACTGCAGAAGGCCGGAGAGTTCAGCAAGA
ACGCCATGGCCGTGGCCCAGGACTTCGAGAGCGTGATCAAGTACAAGAAG
CATTTGGAGGGCGCAGATCTGACCCTGGCAACCAAGGTCTACTACAACCG
CGAGCTGGGTGGCGTCAACCACAGCTACGATGAGTACGCAAAGTTCTATT
TCAGCGCCGGCACGGAGGCTGTCGACATGCAGAACGCCAAAGACACGGCA
GCCAAGATCAACGCCTGAGTGATGGACACGACGCGGAACAAGATCCGGGA
CCTGGTCACACCGACCGACGTTGACCCACAGACGCAGGCGCTCCTTGTGA
ATGCAGTCTACTTCCAGGGTCGTTGGGAGCACGA
BS14927.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1857-PA | 1431 | nec-RA | 1..818 | 17..834 | 4065 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:56:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nec-RA | 1633 | CG1857-RA | 93..912 | 15..834 | 4085 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:56:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7157264..7158065 | 834..33 | 3995 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:56:55 has no hits.
BS14927.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:02 Download gff for
BS14927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1857-PA | 1..817 | 17..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:45:31 Download gff for
BS14927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nec-RA | 86..911 | 7..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:56:13 Download gff for
BS14927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nec-RA | 86..911 | 7..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:56:13 Download gff for
BS14927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7157265..7158065 | 33..833 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:45:31 Download gff for
BS14927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3044770..3045570 | 33..833 | 99 | <- | Minus |
BS14927.complete Sequence
1463 bp assembled on 2006-11-01
GenBank Submission: FJ637835
> BS14927.complete
GAAGTTATCAGTCGACATGGCGAGCAAAGTCTCGATCCTTCTCCTGCTAA
CCGTCCATCTTCTGGCTGCTCAGACCTTCGCCCAGGAGCTCATCGCTTGG
CAACGGCAACAACAACAGCAGCAACAGCAGCAACTGCAGCTACAGCAGCA
ACTGCTGCTGCAGCAGCAACAACACCAACGTAACCCAAGACCGGAGCTGG
GCCTCCGTTCCCTGCCCGGAAACCCGTGGACCCAGAACAATCAGGAAGCC
ATAAGCGATGTGGTGGCGGTGGACCTAACCAAACGTGAGCCGGTCACTCC
GCCACCCAATCGCCCGCCGCCCGTCTTCAGCTACATGGACCGCTTCAGCT
CCGAGCTCTTCAAGGAGATCATTAAGTCGCAAAGTCAGCAGAACGTGGTG
TTCTCGCCCTTCTCCGTCCACGCGCTGCTGGCCCTGATCTACGGGGCCTC
GGACGGAAAAACGTTCCGGGAACTGCAGAAGGCCGGAGAGTTCAGCAAGA
ACGCCATGGCCGTGGCCCAGGACTTCGAGAGCGTGATCAAGTACAAGAAG
CATTTGGAGGGCGCAGATCTGACCCTGGCAACCAAGGTCTACTACAACCG
CGAGCTGGGTGGCGTCAACCACAGCTACGATGAGTACGCAAAGTTCTATT
TCAGCGCCGGCACGGAGGCTGTCGACATGCAGAACGCCAAAGACACGGCA
GCCAAGATCAACGCCTGGGTGATGGACACGACGCGGAACAAGATCCGGGA
CCTGGTCACACCGACCGACGTTGACCCACAGACGCAGGCGCTCCTTGTGA
ATGCAGTCTACTTCCAGGGTCGTTGGGAGCACGAATTCGCCACCATGGAC
ACATCACCCTACGACTTTCAGCACACCAACGGCAGAATTTCCAAGGTGGC
CATGATGTTCAACGACGATGTGTACGGCCTGGCCGAGCTGCCTGAGCTGG
GCGCCACCGCCTTGGAACTGGCCTACAAGGACAGCGCCACCAGCATGCTA
ATCCTGCTGCCCAATGAGACCACCGGACTGGGCAAAATGCTGCAGCAGCT
GTCCCGGCCGGAGTTCGATCTCAACCGCGTTGCCCACCGCCTGCGCCGCC
AGTCGGTCGCTGTGCGCCTGCCCAAGTTCCAATTCGAGTTCGAGCAGGAC
ATGACCGAGCCGCTAAAGAACCTGGGAGTCCACCAGATGTTCACGCCCAA
CTCGCAGGTGACCAAGTTGATGGATCAGCCGGTGCGCGTGAGCAAGATCC
TGCAGAAGGCCTACATCAATGTGGGCGAGGCGGGCACAGAGGCCTCGGCA
GCTTCCTATGCCAAGTTCGTACCCCTTTCGCTGCCTCCCAAGCCCACGGA
GTTCGTCGCCAACCGGCCATTCGTCTTCGCCGTCCGCACACCCGCCTCAG
TTCTGTTCATAGGTCACGTGGAGTATCCCACGCCCATGAGCGTCTAAAAG
CTTTCTAGACCAT
BS14927.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:38:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nec-RA | 1431 | CG1857-PA | 1..1431 | 17..1447 | 7155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:38:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nec-RA | 1633 | CG1857-RA | 93..1527 | 15..1449 | 7175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:38:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7156791..7158065 | 1307..33 | 6375 | 100 | Minus |
| 2R | 25286936 | 2R | 7156583..7156724 | 1449..1308 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:38:29 has no hits.
BS14927.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:21 Download gff for
BS14927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nec-RA | 1..1431 | 17..1447 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:07:05 Download gff for
BS14927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nec-RA | 73..1514 | 7..1449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:53 Download gff for
BS14927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nec-RA | 95..1523 | 17..1445 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:21 Download gff for
BS14927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nec-RA | 73..1514 | 7..1449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:48 Download gff for
BS14927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nec-RA | 95..1523 | 17..1445 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:48 Download gff for
BS14927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7156587..7156724 | 1308..1445 | 100 | <- | Minus |
| 2R | 7156791..7158065 | 33..1307 | 100 | <- | Minus |
| 2R | 7158132..7158147 | 17..32 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:53 Download gff for
BS14927.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3045637..3045652 | 17..32 | 100 | | Minus |
| arm_2R | 3044092..3044229 | 1308..1445 | 100 | <- | Minus |
| arm_2R | 3044296..3045570 | 33..1307 | 100 | <- | Minus |
BS14927.pep Sequence
Translation from 16 to 1446
> BS14927.pep
MASKVSILLLLTVHLLAAQTFAQELIAWQRQQQQQQQQQLQLQQQLLLQQ
QQHQRNPRPELGLRSLPGNPWTQNNQEAISDVVAVDLTKREPVTPPPNRP
PPVFSYMDRFSSELFKEIIKSQSQQNVVFSPFSVHALLALIYGASDGKTF
RELQKAGEFSKNAMAVAQDFESVIKYKKHLEGADLTLATKVYYNRELGGV
NHSYDEYAKFYFSAGTEAVDMQNAKDTAAKINAWVMDTTRNKIRDLVTPT
DVDPQTQALLVNAVYFQGRWEHEFATMDTSPYDFQHTNGRISKVAMMFND
DVYGLAELPELGATALELAYKDSATSMLILLPNETTGLGKMLQQLSRPEF
DLNRVAHRLRRQSVAVRLPKFQFEFEQDMTEPLKNLGVHQMFTPNSQVTK
LMDQPVRVSKILQKAYINVGEAGTEASAASYAKFVPLSLPPKPTEFVANR
PFVFAVRTPASVLFIGHVEYPTPMSV*
BS14927.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:12:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nec-PA | 476 | CG1857-PA | 1..476 | 1..476 | 2438 | 100 | Plus |
| Spn43Aa-PA | 390 | CG12172-PA | 30..387 | 110..468 | 564 | 36.7 | Plus |
| Spn42De-PB | 386 | CG9460-PB | 16..383 | 109..468 | 550 | 34.8 | Plus |
| Spn42De-PA | 404 | CG9460-PA | 34..401 | 109..468 | 550 | 34.8 | Plus |
| Spn55B-PA | 374 | CG10913-PA | 14..368 | 109..466 | 488 | 34.1 | Plus |
