Clone Sequence Records
BS14934.3prime Sequence
784 bp (716 high quality bases) assembled on 2006-10-13
> BS14934.3prime
ATGGTCTAGAAAGCTTTCACGAGAGTTCCTGCGAGAACTGCGTCTCCAGG
GTGGGTCTAGTTCTAGTGGGGTTCCTGCTGGGATTGCGTATCGGTGGTCC
TGGGCTGCCATAGCCCGCCGCATACAGCTGCGGGCACGAGTCTTTTATGA
GTTCCTGCGTCTCGCGCAACTGCCGCTGCACCTGCGGCGCCAGTCTCTGC
ACGCTGATGGCCGGCGGGAACTTGTATTCCGCCGCTGGAGCGGCCTGTAC
GCCGTGCATCATCTCGCCGTAGTAGGCGCCCGGCGGAGGAGGCGGTGGCT
GTTGCTGCTGGATTTGGCTGTGTGGAGCGGTTGGCGGTTCGTAAGTTTCG
GGGGCGTTGCATTTGATGCCAGTTGCACAGAGGAGAGTGGTTGCAGCGGG
TCCACCATAGATCAGGCGCTTTGGACTCACGCTCTGGGGCTTTGATCCGG
CGGGAAGGGTCAGCAGGTATTGCTGTTGCTGCTGCTGGTAAAGTTGCTGC
TGCTGCTGCTGATTGAGTTGCAGCTGCTGTTGCTGCTGCAGCTGTAGCTG
TTGTTGCTGCTGTTGATGCTGCTGCTGCAACTGGACGAGCTGTGCCGCTG
CTGCTGCCGTGGACGTGTTGACAACATTAGGATCCAACTGGGGCAGCAGT
ATTAGTTGCTGCTGCTGCTGCTGGTAGAGCACTGCCGCCTGTTGCTGCTG
CTGTTGTTGCTGCTGCTGCACCACTTGCCGTCCCGTCAACACATGCTGAG
GTAGATACTCCGTCGTGGGCAGCGCGACTATCGT
BS14934.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14821-PA | 1044 | CG14821-RA | 277..1044 | 784..17 | 3840 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:22:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tow-RF | 1988 | CG14821-RF | 1064..1831 | 784..17 | 3840 | 100 | Minus |
tow-RD | 2654 | CG14821-RD | 1079..1846 | 784..17 | 3840 | 100 | Minus |
tow-RC | 1508 | CG14821-RC | 584..1351 | 784..17 | 3840 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:22:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6947500..6947915 | 784..369 | 2080 | 100 | Minus |
3L | 28110227 | 3L | 6948275..6948505 | 247..17 | 1155 | 100 | Minus |
3L | 28110227 | 3L | 6947985..6948110 | 369..244 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:22:18 has no hits.
BS14934.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:05 Download gff for
BS14934.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14821-PA | 277..1044 | 17..784 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:34 Download gff for
BS14934.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tow-RC | 584..1361 | 7..784 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:29 Download gff for
BS14934.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tow-RC | 584..1361 | 7..784 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:29 Download gff for
BS14934.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6947500..6947915 | 369..784 | 100 | -> | Minus |
3L | 6947986..6948109 | 245..368 | 100 | -> | Minus |
3L | 6948278..6948515 | 7..244 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:34 Download gff for
BS14934.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6940600..6941015 | 369..784 | 100 | -> | Minus |
arm_3L | 6941086..6941209 | 245..368 | 100 | -> | Minus |
arm_3L | 6941378..6941615 | 7..244 | 98 | | Minus |
BS14934.5prime Sequence
892 bp (709 high quality bases) assembled on 2006-10-13
> BS14934.5prime
GAAGTTATCAGTCGACATGCTGGACAAGAAGATTGATGAGGGTCCCGACT
ACGATTCGGCCAGCGAGACGGAGATCGCATTGGAGGAGGCCCGACTAAAC
GCCCTGCGTCAACATTGGGAGTCCGCCAGCATTACGGCCTCCATCTGCTC
CTCGGCCAGCCGCTCGCTGCAGACGACGCCCATCCGCCAGGTGCAGGTGC
CATTGAAGCAGCCACCGCGTGGCGCCGGCCTGCTGATTCAGCCTTCTAGC
GCCTCGGCGGTCACCGCCTCCACCTCCTCCTCCTCCTCATCGACGATAGT
CGCGCTGCCCACGACGGAGTATCTACCTCAGCATGTGTTGACGGGACGGC
AAGTGGTGCAGCAGCAGCAACAACAGCAGCAGCAACAGGCGGCAGTGCTC
TACCAGCAGCAGCAGCAGCAACTAATACTGCTGCCCCAGTTGGATCCTAA
TGTTGTCAACACGTCCACGGCAGCAGCAGCGGCACAGCTCGTCCAGTTGC
AGCAGCAGCATCAACAGCAGCAACAACAGCTACAGCTGCAGCAGCAACAG
CAGCTGCAACTCAATCAGCAGCAGCAGCAGCAACTTTACCAGCAGCAGCA
ACAGCAATACCTGCTGACCCTTCCCGCCGGATCAAAGCCCCAGAGCGTGA
GTCCAAAGCGCCTGATCTATGGTGGACCCGCTGCAACCACTCTCCTCTGT
GCAACTGGCATCAAATGCAACGCCCCCGAAACTTACGAACCGCCAACCGC
TCCACACAGCCAAATCCAGCAGCAACAGCCACCGCCTCCTCCGCCGGGCG
CCTACTACGGCGAGATGATGCACGGCGTACAGGCCGCTCCAGCGGCGGAA
TACAAGTTCCCGCCGGCCATCAGCGTGCAGAGACTGGCGCCG
BS14934.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14821-PA | 1044 | CG14821-RA | 1..876 | 17..892 | 4380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tow-RF | 1988 | CG14821-RF | 787..1663 | 16..892 | 4385 | 100 | Plus |
tow-RD | 2654 | CG14821-RD | 802..1678 | 16..892 | 4385 | 100 | Plus |
tow-RC | 1508 | CG14821-RC | 307..1183 | 16..892 | 4385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6947246..6947915 | 39..708 | 3350 | 100 | Plus |
3L | 28110227 | 3L | 6947985..6948110 | 708..833 | 630 | 100 | Plus |
3L | 28110227 | 3L | 6948275..6948337 | 830..892 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:09:25 has no hits.
BS14934.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:05 Download gff for
BS14934.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14821-PA | 1..876 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:45:08 Download gff for
BS14934.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tow-RC | 300..1183 | 8..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:24:35 Download gff for
BS14934.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tow-RC | 300..1183 | 8..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:24:35 Download gff for
BS14934.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6947248..6947915 | 41..708 | 100 | -> | Plus |
3L | 6947986..6948109 | 709..832 | 100 | -> | Plus |
3L | 6948278..6948337 | 833..892 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:45:08 Download gff for
BS14934.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6940348..6941015 | 41..708 | 100 | -> | Plus |
arm_3L | 6941086..6941209 | 709..832 | 100 | -> | Plus |
arm_3L | 6941378..6941437 | 833..892 | 100 | | Plus |
BS14934.complete Sequence
1076 bp assembled on 2006-11-01
GenBank Submission: FJ637836
> BS14934.complete
GAAGTTATCAGTCGACATGCTGGACAAGAAGATTGATGAGGGTCCCGACT
ACGATTCGGCCAGCGAGACGGAGATCGCATTGGAGGAGGCCCGACTAAAC
GCCCTGCGTCAACATTGGGAGTCCGCCAGCATTACGGCCTCCATCTGCTC
CTCGGCCAGCCGCTCGCTGCAGACGACGCCCATCCGCCAGGTGCAGGTGC
CATTGAAGCAGCCACCGCGTGGCGCCGGCCTGCTGATTCAGCCTTCTAGC
GCCTCGGCGGTCACCGCCTCCACCTCCTCCTCCTCCTCATCGACGATAGT
CGCGCTGCCCACGACGGAGTATCTACCTCAGCATGTGTTGACGGGACGGC
AAGTGGTGCAGCAGCAGCAACAACAGCAGCAGCAACAGGCGGCAGTGCTC
TACCAGCAGCAGCAGCAGCAACTAATACTGCTGCCCCAGTTGGATCCTAA
TGTTGTCAACACGTCCACGGCAGCAGCAGCGGCACAGCTCGTCCAGTTGC
AGCAGCAGCATCAACAGCAGCAACAACAGCTACAGCTGCAGCAGCAACAG
CAGCTGCAACTCAATCAGCAGCAGCAGCAGCAACTTTACCAGCAGCAGCA
ACAGCAATACCTGCTGACCCTTCCCGCCGGATCAAAGCCCCAGAGCGTGA
GTCCAAAGCGCCTGATCTATGGTGGACCCGCTGCAACCACTCTCCTCTGT
GCAACTGGCATCAAATGCAACGCCCCCGAAACTTACGAACCGCCAACCGC
TCCACACAGCCAAATCCAGCAGCAACAGCCACCGCCTCCTCCGCCGGGCG
CCTACTACGGCGAGATGATGCACGGCGTACAGGCCGCTCCAGCGGCGGAA
TACAAGTTCCCGCCGGCCATCAGCGTGCAGAGACTGGCGCCGCAGGTGCA
GCGGCAGTTGCGCGAGACGCAGGAACTCATAAAAGACTCGTGCCCGCAGC
TGTATGCGGCGGGCTATGGCAGCCCAGGACCACCGATACGCAATCCCAGC
AGGAACCCCACTAGAACTAGACCCACCCTGGAGACGCAGTTCTCGCAGGA
ACTCTCGTGAAAGCTTTCTAGACCAT
BS14934.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:31:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tow-RF | 1326 | CG14821-PF | 282..1326 | 16..1060 | 5225 | 100 | Plus |
tow-RD | 1341 | CG14821-PD | 297..1341 | 16..1060 | 5225 | 100 | Plus |
tow-RC | 1341 | CG14821-PC | 297..1341 | 16..1060 | 5225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tow-RF | 1988 | CG14821-RF | 787..1831 | 16..1060 | 5225 | 100 | Plus |
tow-RD | 2654 | CG14821-RD | 802..1846 | 16..1060 | 5225 | 100 | Plus |
tow-RC | 1508 | CG14821-RC | 307..1351 | 16..1060 | 5225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6947246..6947915 | 39..708 | 3350 | 100 | Plus |
3L | 28110227 | 3L | 6948275..6948505 | 830..1060 | 1155 | 100 | Plus |
3L | 28110227 | 3L | 6947985..6948110 | 708..833 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:31:20 has no hits.
BS14934.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:04 Download gff for
BS14934.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tow-RC | 290..1341 | 8..1060 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:47 Download gff for
BS14934.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tow-RC | 290..1351 | 8..1070 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:29:23 Download gff for
BS14934.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tow-RC | 308..1350 | 17..1059 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:04 Download gff for
BS14934.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tow-RC | 290..1351 | 8..1070 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:16 Download gff for
BS14934.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tow-RC | 308..1350 | 17..1059 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:16 Download gff for
BS14934.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6948278..6948504 | 833..1059 | 100 | | Plus |
3L | 6946535..6946558 | 17..40 | 100 | -> | Plus |
3L | 6947248..6947915 | 41..708 | 100 | -> | Plus |
3L | 6947986..6948109 | 709..832 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:29:23 Download gff for
BS14934.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6941378..6941604 | 833..1059 | 100 | | Plus |
arm_3L | 6939635..6939658 | 17..40 | 100 | -> | Plus |
arm_3L | 6940348..6941015 | 41..708 | 100 | -> | Plus |
arm_3L | 6941086..6941209 | 709..832 | 100 | -> | Plus |
BS14934.pep Sequence
Translation from 16 to 1059
> BS14934.pep
MLDKKIDEGPDYDSASETEIALEEARLNALRQHWESASITASICSSASRS
LQTTPIRQVQVPLKQPPRGAGLLIQPSSASAVTASTSSSSSSTIVALPTT
EYLPQHVLTGRQVVQQQQQQQQQQAAVLYQQQQQQLILLPQLDPNVVNTS
TAAAAAQLVQLQQQHQQQQQQLQLQQQQQLQLNQQQQQQLYQQQQQQYLL
TLPAGSKPQSVSPKRLIYGGPAATTLLCATGIKCNAPETYEPPTAPHSQI
QQQQPPPPPPGAYYGEMMHGVQAAPAAEYKFPPAISVQRLAPQVQRQLRE
TQELIKDSCPQLYAAGYGSPGPPIRNPSRNPTRTRPTLETQFSQELS*
BS14934.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tow-PF | 441 | CG14821-PF | 95..441 | 1..347 | 1767 | 100 | Plus |
tow-PD | 446 | CG14821-PD | 100..446 | 1..347 | 1767 | 100 | Plus |
tow-PC | 446 | CG14821-PC | 100..446 | 1..347 | 1767 | 100 | Plus |
tow-PG | 446 | CG14821-PG | 95..446 | 1..347 | 1751 | 98.6 | Plus |
tow-PE | 451 | CG14821-PE | 100..451 | 1..347 | 1751 | 98.6 | Plus |