Clone BS14934 Report

Search the DGRC for BS14934

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:149
Well:34
Vector:pDNR-Dual
Associated Gene/Transcripttow-RA
Protein status:BS14934.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14934.3prime Sequence

784 bp (716 high quality bases) assembled on 2006-10-13

> BS14934.3prime
ATGGTCTAGAAAGCTTTCACGAGAGTTCCTGCGAGAACTGCGTCTCCAGG
GTGGGTCTAGTTCTAGTGGGGTTCCTGCTGGGATTGCGTATCGGTGGTCC
TGGGCTGCCATAGCCCGCCGCATACAGCTGCGGGCACGAGTCTTTTATGA
GTTCCTGCGTCTCGCGCAACTGCCGCTGCACCTGCGGCGCCAGTCTCTGC
ACGCTGATGGCCGGCGGGAACTTGTATTCCGCCGCTGGAGCGGCCTGTAC
GCCGTGCATCATCTCGCCGTAGTAGGCGCCCGGCGGAGGAGGCGGTGGCT
GTTGCTGCTGGATTTGGCTGTGTGGAGCGGTTGGCGGTTCGTAAGTTTCG
GGGGCGTTGCATTTGATGCCAGTTGCACAGAGGAGAGTGGTTGCAGCGGG
TCCACCATAGATCAGGCGCTTTGGACTCACGCTCTGGGGCTTTGATCCGG
CGGGAAGGGTCAGCAGGTATTGCTGTTGCTGCTGCTGGTAAAGTTGCTGC
TGCTGCTGCTGATTGAGTTGCAGCTGCTGTTGCTGCTGCAGCTGTAGCTG
TTGTTGCTGCTGTTGATGCTGCTGCTGCAACTGGACGAGCTGTGCCGCTG
CTGCTGCCGTGGACGTGTTGACAACATTAGGATCCAACTGGGGCAGCAGT
ATTAGTTGCTGCTGCTGCTGCTGGTAGAGCACTGCCGCCTGTTGCTGCTG
CTGTTGTTGCTGCTGCTGCACCACTTGCCGTCCCGTCAACACATGCTGAG
GTAGATACTCCGTCGTGGGCAGCGCGACTATCGT

BS14934.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG14821-PA 1044 CG14821-RA 277..1044 784..17 3840 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
tow-RF 1988 CG14821-RF 1064..1831 784..17 3840 100 Minus
tow-RD 2654 CG14821-RD 1079..1846 784..17 3840 100 Minus
tow-RC 1508 CG14821-RC 584..1351 784..17 3840 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:22:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6947500..6947915 784..369 2080 100 Minus
3L 28110227 3L 6948275..6948505 247..17 1155 100 Minus
3L 28110227 3L 6947985..6948110 369..244 630 100 Minus
Blast to na_te.dros performed on 2015-01-31 10:22:18 has no hits.

BS14934.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:05 Download gff for BS14934.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14821-PA 277..1044 17..784 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:34 Download gff for BS14934.3prime
Subject Subject Range Query Range Percent Splice Strand
tow-RC 584..1361 7..784 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:29 Download gff for BS14934.3prime
Subject Subject Range Query Range Percent Splice Strand
tow-RC 584..1361 7..784 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:29 Download gff for BS14934.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6947500..6947915 369..784 100 -> Minus
3L 6947986..6948109 245..368 100 -> Minus
3L 6948278..6948515 7..244 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:34 Download gff for BS14934.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6940600..6941015 369..784 100 -> Minus
arm_3L 6941086..6941209 245..368 100 -> Minus
arm_3L 6941378..6941615 7..244 98   Minus

BS14934.5prime Sequence

892 bp (709 high quality bases) assembled on 2006-10-13

> BS14934.5prime
GAAGTTATCAGTCGACATGCTGGACAAGAAGATTGATGAGGGTCCCGACT
ACGATTCGGCCAGCGAGACGGAGATCGCATTGGAGGAGGCCCGACTAAAC
GCCCTGCGTCAACATTGGGAGTCCGCCAGCATTACGGCCTCCATCTGCTC
CTCGGCCAGCCGCTCGCTGCAGACGACGCCCATCCGCCAGGTGCAGGTGC
CATTGAAGCAGCCACCGCGTGGCGCCGGCCTGCTGATTCAGCCTTCTAGC
GCCTCGGCGGTCACCGCCTCCACCTCCTCCTCCTCCTCATCGACGATAGT
CGCGCTGCCCACGACGGAGTATCTACCTCAGCATGTGTTGACGGGACGGC
AAGTGGTGCAGCAGCAGCAACAACAGCAGCAGCAACAGGCGGCAGTGCTC
TACCAGCAGCAGCAGCAGCAACTAATACTGCTGCCCCAGTTGGATCCTAA
TGTTGTCAACACGTCCACGGCAGCAGCAGCGGCACAGCTCGTCCAGTTGC
AGCAGCAGCATCAACAGCAGCAACAACAGCTACAGCTGCAGCAGCAACAG
CAGCTGCAACTCAATCAGCAGCAGCAGCAGCAACTTTACCAGCAGCAGCA
ACAGCAATACCTGCTGACCCTTCCCGCCGGATCAAAGCCCCAGAGCGTGA
GTCCAAAGCGCCTGATCTATGGTGGACCCGCTGCAACCACTCTCCTCTGT
GCAACTGGCATCAAATGCAACGCCCCCGAAACTTACGAACCGCCAACCGC
TCCACACAGCCAAATCCAGCAGCAACAGCCACCGCCTCCTCCGCCGGGCG
CCTACTACGGCGAGATGATGCACGGCGTACAGGCCGCTCCAGCGGCGGAA
TACAAGTTCCCGCCGGCCATCAGCGTGCAGAGACTGGCGCCG

BS14934.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG14821-PA 1044 CG14821-RA 1..876 17..892 4380 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:27
Subject Length Description Subject Range Query Range Score Percent Strand
tow-RF 1988 CG14821-RF 787..1663 16..892 4385 100 Plus
tow-RD 2654 CG14821-RD 802..1678 16..892 4385 100 Plus
tow-RC 1508 CG14821-RC 307..1183 16..892 4385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6947246..6947915 39..708 3350 100 Plus
3L 28110227 3L 6947985..6948110 708..833 630 100 Plus
3L 28110227 3L 6948275..6948337 830..892 315 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:09:25 has no hits.

BS14934.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:05 Download gff for BS14934.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14821-PA 1..876 17..892 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:45:08 Download gff for BS14934.5prime
Subject Subject Range Query Range Percent Splice Strand
tow-RC 300..1183 8..892 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:24:35 Download gff for BS14934.5prime
Subject Subject Range Query Range Percent Splice Strand
tow-RC 300..1183 8..892 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:24:35 Download gff for BS14934.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6947248..6947915 41..708 100 -> Plus
3L 6947986..6948109 709..832 100 -> Plus
3L 6948278..6948337 833..892 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:45:08 Download gff for BS14934.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6940348..6941015 41..708 100 -> Plus
arm_3L 6941086..6941209 709..832 100 -> Plus
arm_3L 6941378..6941437 833..892 100   Plus

BS14934.complete Sequence

1076 bp assembled on 2006-11-01

GenBank Submission: FJ637836

> BS14934.complete
GAAGTTATCAGTCGACATGCTGGACAAGAAGATTGATGAGGGTCCCGACT
ACGATTCGGCCAGCGAGACGGAGATCGCATTGGAGGAGGCCCGACTAAAC
GCCCTGCGTCAACATTGGGAGTCCGCCAGCATTACGGCCTCCATCTGCTC
CTCGGCCAGCCGCTCGCTGCAGACGACGCCCATCCGCCAGGTGCAGGTGC
CATTGAAGCAGCCACCGCGTGGCGCCGGCCTGCTGATTCAGCCTTCTAGC
GCCTCGGCGGTCACCGCCTCCACCTCCTCCTCCTCCTCATCGACGATAGT
CGCGCTGCCCACGACGGAGTATCTACCTCAGCATGTGTTGACGGGACGGC
AAGTGGTGCAGCAGCAGCAACAACAGCAGCAGCAACAGGCGGCAGTGCTC
TACCAGCAGCAGCAGCAGCAACTAATACTGCTGCCCCAGTTGGATCCTAA
TGTTGTCAACACGTCCACGGCAGCAGCAGCGGCACAGCTCGTCCAGTTGC
AGCAGCAGCATCAACAGCAGCAACAACAGCTACAGCTGCAGCAGCAACAG
CAGCTGCAACTCAATCAGCAGCAGCAGCAGCAACTTTACCAGCAGCAGCA
ACAGCAATACCTGCTGACCCTTCCCGCCGGATCAAAGCCCCAGAGCGTGA
GTCCAAAGCGCCTGATCTATGGTGGACCCGCTGCAACCACTCTCCTCTGT
GCAACTGGCATCAAATGCAACGCCCCCGAAACTTACGAACCGCCAACCGC
TCCACACAGCCAAATCCAGCAGCAACAGCCACCGCCTCCTCCGCCGGGCG
CCTACTACGGCGAGATGATGCACGGCGTACAGGCCGCTCCAGCGGCGGAA
TACAAGTTCCCGCCGGCCATCAGCGTGCAGAGACTGGCGCCGCAGGTGCA
GCGGCAGTTGCGCGAGACGCAGGAACTCATAAAAGACTCGTGCCCGCAGC
TGTATGCGGCGGGCTATGGCAGCCCAGGACCACCGATACGCAATCCCAGC
AGGAACCCCACTAGAACTAGACCCACCCTGGAGACGCAGTTCTCGCAGGA
ACTCTCGTGAAAGCTTTCTAGACCAT

BS14934.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
tow-RF 1326 CG14821-PF 282..1326 16..1060 5225 100 Plus
tow-RD 1341 CG14821-PD 297..1341 16..1060 5225 100 Plus
tow-RC 1341 CG14821-PC 297..1341 16..1060 5225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
tow-RF 1988 CG14821-RF 787..1831 16..1060 5225 100 Plus
tow-RD 2654 CG14821-RD 802..1846 16..1060 5225 100 Plus
tow-RC 1508 CG14821-RC 307..1351 16..1060 5225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6947246..6947915 39..708 3350 100 Plus
3L 28110227 3L 6948275..6948505 830..1060 1155 100 Plus
3L 28110227 3L 6947985..6948110 708..833 630 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:31:20 has no hits.

BS14934.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:04 Download gff for BS14934.complete
Subject Subject Range Query Range Percent Splice Strand
tow-RC 290..1341 8..1060 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:47 Download gff for BS14934.complete
Subject Subject Range Query Range Percent Splice Strand
tow-RC 290..1351 8..1070 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:29:23 Download gff for BS14934.complete
Subject Subject Range Query Range Percent Splice Strand
tow-RC 308..1350 17..1059 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:04 Download gff for BS14934.complete
Subject Subject Range Query Range Percent Splice Strand
tow-RC 290..1351 8..1070 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:16 Download gff for BS14934.complete
Subject Subject Range Query Range Percent Splice Strand
tow-RC 308..1350 17..1059 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:16 Download gff for BS14934.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6948278..6948504 833..1059 100   Plus
3L 6946535..6946558 17..40 100 -> Plus
3L 6947248..6947915 41..708 100 -> Plus
3L 6947986..6948109 709..832 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:29:23 Download gff for BS14934.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6941378..6941604 833..1059 100   Plus
arm_3L 6939635..6939658 17..40 100 -> Plus
arm_3L 6940348..6941015 41..708 100 -> Plus
arm_3L 6941086..6941209 709..832 100 -> Plus

BS14934.pep Sequence

Translation from 16 to 1059

> BS14934.pep
MLDKKIDEGPDYDSASETEIALEEARLNALRQHWESASITASICSSASRS
LQTTPIRQVQVPLKQPPRGAGLLIQPSSASAVTASTSSSSSSTIVALPTT
EYLPQHVLTGRQVVQQQQQQQQQQAAVLYQQQQQQLILLPQLDPNVVNTS
TAAAAAQLVQLQQQHQQQQQQLQLQQQQQLQLNQQQQQQLYQQQQQQYLL
TLPAGSKPQSVSPKRLIYGGPAATTLLCATGIKCNAPETYEPPTAPHSQI
QQQQPPPPPPGAYYGEMMHGVQAAPAAEYKFPPAISVQRLAPQVQRQLRE
TQELIKDSCPQLYAAGYGSPGPPIRNPSRNPTRTRPTLETQFSQELS*

BS14934.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
tow-PF 441 CG14821-PF 95..441 1..347 1767 100 Plus
tow-PD 446 CG14821-PD 100..446 1..347 1767 100 Plus
tow-PC 446 CG14821-PC 100..446 1..347 1767 100 Plus
tow-PG 446 CG14821-PG 95..446 1..347 1751 98.6 Plus
tow-PE 451 CG14821-PE 100..451 1..347 1751 98.6 Plus