Clone BS14941 Report

Search the DGRC for BS14941

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:149
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG4842-RA
Protein status:BS14941.pep: full length peptide match
Sequenced Size:812

Clone Sequence Records

BS14941.complete Sequence

812 bp assembled on 2010-02-09

GenBank Submission: KX806212

> BS14941.complete
GAAGTTATCAGTCGACATGGACTTAGCCGGCAAAAATGTCGTTTACCTTG
GCGGATTCGGTGGAATAGGCCAAAAATGTGTGCAAGAACTGCTCCAGCGA
CCAATAAAGGCTCTAGCCATTTTCGATCTAAATGCTAATGAGCAGCTCTT
GGCTAAGTGGAAAAGCCAGCATCCCGATACGGACGTCTTCTACCACAAGC
TGGACATAACCCAGAAATCGGATATAGACGCGGCCTACAAGGCGACCGCC
GAGAGATTCGGACACTTCGATGTGGTGGTCAATGGCAGTGGACTGATGAA
CGATCGCCTGGTCGAACTCACTATTCAAATTAATCTGCTGGGAGTTATCA
ACAGCACTTTGACCGCCTTGGAGTACATGGACAAGGCCAAAGGCGGAAAG
GGTGGGCTCATAGTGAATATATCATCGGTGGCTGGACTGCAGCCCACAGC
TATAATGGCCATTTACTCGGCGGCCAAGACGGGAGTTACCACATTCACCA
GAGCCATGGCTAACCCCTACTTTTACGCCCACTCTGGTGTAGGCTTCCTT
ACCATCTGTCCCGGATTCACGGACACTGGGCTACTGGAGGATATTGGCAA
CAAGACGACATTCACCTACGACACTCCCATGCTGGCCATGTTCAACCGGG
TGAAGCGTCAGAAGGCCGAGGATTGTGCGAGGAACCTGGTCTCAGCAATA
GAGACGTCCAAAAATGGAACTGTCCTCATGCTGGAGATGGGTGAGACGAC
GGAGGTGGACATGCCAGTCATGTGGAAGCCACAGTTGGATAATTAAAAGC
TTTCTAGACCAT

BS14941.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:05:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4842-RA 780 CG4842-PA 1..780 17..796 3900 100 Plus
CG18814-RB 804 CG18814-PB 16..733 32..746 1200 78.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:05:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4842-RA 934 CG4842-RA 65..848 13..796 3920 100 Plus
CG18814-RB 956 CG18814-RB 66..783 32..746 1200 78.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16369148..16369432 512..796 1425 100 Plus
3L 28110227 3L 16368606..16368835 108..337 1150 100 Plus
3L 28110227 3L 16368904..16369078 337..511 875 100 Plus
3L 28110227 3L 16368453..16368550 13..110 490 100 Plus
3L 28110227 3L 16370060..16370251 146..337 480 83.3 Plus
3L 28110227 3L 16370307..16370479 339..511 385 81.5 Plus
3L 28110227 3L 16369891..16369952 32..93 220 90.3 Plus
Blast to na_te.dros performed on 2014-11-27 11:04:59 has no hits.

BS14941.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:36 Download gff for BS14941.complete
Subject Subject Range Query Range Percent Splice Strand
CG4842-RA 51..828 17..794 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:39 Download gff for BS14941.complete
Subject Subject Range Query Range Percent Splice Strand
CG4842-RA 69..846 17..794 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:51 Download gff for BS14941.complete
Subject Subject Range Query Range Percent Splice Strand
CG4842-RA 51..828 17..794 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:24 Download gff for BS14941.complete
Subject Subject Range Query Range Percent Splice Strand
CG4842-RA 69..846 17..794 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:24 Download gff for BS14941.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16369148..16369430 512..794 100   Plus
3L 16368457..16368549 17..109 100 -> Plus
3L 16368608..16368835 110..337 100 -> Plus
3L 16368905..16369078 338..511 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:39 Download gff for BS14941.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16362005..16362178 338..511 100 -> Plus
arm_3L 16361557..16361649 17..109 100 -> Plus
arm_3L 16361708..16361935 110..337 100 -> Plus
arm_3L 16362248..16362530 512..794 100   Plus

BS14941.3prime Sequence

747 bp (717 high quality bases) assembled on 2006-10-13

> BS14941.3prime
ATGGTCTAGAAAGCTTGTAATTATCCAACTGTGGCTTCCACATGACTGGC
ATGTCCACCTCCGTCGTCTCACCCATCTCCAGCATGAGGACAGTTCCATT
TTTGGACGTCTCTATTGCTGAGACCAGGTTCCTCGCACAATCCTCGGCCT
TCTGACGCTTCACCCGGTTGAACATGGCCAGCATGGGAGTGTCGTAGGTG
AATGTCGTCTTGTTGCCAATATCCTCCAGTAGCCCAGTGTCCGTGAATCC
GGGACAGATGGTAAGGAAGCCTACACCAGAGTGGGCGTAAAAGTAGGGGT
TAGCCATGGCTCTGGTGAATGTGGTAACTCCCGTCTTGGCCGCCGAGTAA
ATGGCCATTATAGCTGTGGGCTGCAGTCCAGCCACCGATGATATATTCAC
TATGAGCCCACCCTTTCCGCCTTTGGCCTTGTCCATGTACTCCAAGGCGG
TCAAAGTGCTGTTGATAACTCCCAGCAGATTAATTTGAATAGTGAGTTCG
ACCAGGCGATCGTTCATCAGTCCACTGCCATTGACCACCACATCGAAGTG
TCCGAATCTCTCGGCGGTCGCCTTGTAGGCCGCGTCTATATCCGATTTCT
GGGTTATGTCCAGCTTGTGGTAGAAGACGTCCGTATCGGGATGCTGGCTT
TTCCACTTAGCCAAGAGCTGCTCATTAGCATTTAGATCGAAAATGGCTAG
AGCCTTTATTGGTCGCTGGAACAGTTCTTGCACACATTTTTGGCCTA

BS14941.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4842-PA 780 CG4842-RA 50..779 747..18 3625 99.8 Minus
CG18814-PA 858 CG18814-RA 130..230 667..567 180 87.1 Minus
CG18814-PA 858 CG18814-RA 244..275 553..522 135 96.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:07:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG4842-RA 934 CG4842-RA 118..847 747..18 3635 99.9 Minus
CG18814-RB 956 CG18814-RB 100..783 747..67 1115 77.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16369148..16369431 301..18 1420 100 Minus
3L 28110227 3L 16368606..16368835 705..476 1150 100 Minus
3L 28110227 3L 16368904..16369078 476..302 875 100 Minus
3L 28110227 3L 16370060..16370251 667..476 480 83.3 Minus
3L 28110227 3L 16370307..16370479 474..302 385 81.5 Minus
3L 28110227 3L 16368506..16368550 747..703 210 97.8 Minus
Blast to na_te.dros performed on 2015-02-11 19:07:40 has no hits.

BS14941.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:10 Download gff for BS14941.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4842-PA 51..780 16..746 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:11:01 Download gff for BS14941.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4842-RA 119..847 18..746 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:00:32 Download gff for BS14941.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4842-RA 119..847 18..746 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:00:32 Download gff for BS14941.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16368507..16368549 704..746 97 -> Minus
3L 16368608..16368835 476..703 100 -> Minus
3L 16368905..16369078 302..475 100 -> Minus
3L 16369148..16369431 18..301 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:11:01 Download gff for BS14941.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16361607..16361649 704..746 97 -> Minus
arm_3L 16361708..16361935 476..703 100 -> Minus
arm_3L 16362005..16362178 302..475 100 -> Minus
arm_3L 16362248..16362531 18..301 100   Minus

BS14941.5prime Sequence

810 bp (771 high quality bases) assembled on 2006-10-13

> BS14941.5prime
AAAGTTATCAGTCGACATGGACTTAGCCGGCAAAAATGTCGTTTACCTTG
GCGGATTCGGTGGAATAGGCCAAAAATGTGTGCAAGAACTGCTCCAGCGA
CCAATAAAGGCTCTAGCCATTTTCGATCTAAATGCTAATGAGCAGCTCTT
GGCTAAGTGGAAAAGCCAGCATCCCGATACGGACGTCTTCTACCACAAGC
TGGACATAACCCAGAAATCGGATATAGACGCGGCCTACAAGGCGACCGCC
GAGAGATTCGGACACTTCGATGTGGTGGTCAATGGCAGTGGACTGATGAA
CGATCGCCTGGTCGAACTCACTATTCAAATTAATCTGCTGGGAGTTATCA
ACAGCACTTTGACCGCCTTGGAGTACATGGACAAGGCCAAAGGCGGAAAG
GGTGGGCTCATAGTGAATATATCATCGGTGGCTGGACTGCAGCCCACAGC
TATAATGGCCATTTACTCGGCGGCCAAGACGGGAGTTACCACATTCACCA
GAGCCATGGCTAACCCCTACTTTTACGCCCACTCTGGTGTAGGCTTCCTT
ACCATCTGTCCCGGATTCACGGACACTGGGCTACTGGAGGATATTGGCAA
CAAGACGACATTCACCTACGACACTCCCATGCTGGCCATGTTCAACCGGG
TGAAGCGTCAGAAGGCCGAGGATTGTGCGAGGAACCTGGTCTCAGCAATA
GAGACGTCCAAAAATGGAACTGTCCTCATGCTGGAGATGGGTGAGACGAC
GGAGGTGGACATGCCAGTCATGTGGAAGCCACAGTTGGATAATTAAAAGC
TTTCTAGAAC

BS14941.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG4842-PA 780 CG4842-RA 1..780 17..796 3900 100 Plus
CG18814-PA 858 CG18814-RA 130..230 146..246 180 87.1 Plus
CG18814-PA 858 CG18814-RA 16..77 32..93 160 90.3 Plus
CG18814-PA 858 CG18814-RA 244..275 260..291 135 96.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4842-RA 934 CG4842-RA 65..848 13..796 3920 100 Plus
CG18814-RB 956 CG18814-RB 66..783 32..746 1225 78.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16369148..16369432 512..796 1425 100 Plus
3L 28110227 3L 16368606..16368835 108..337 1150 100 Plus
3L 28110227 3L 16368904..16369078 337..511 875 100 Plus
3L 28110227 3L 16368453..16368550 13..110 490 100 Plus
3L 28110227 3L 16370060..16370251 146..337 480 83.3 Plus
3L 28110227 3L 16370307..16370479 339..511 385 81.5 Plus
3L 28110227 3L 16369891..16369952 32..93 220 90.3 Plus
Blast to na_te.dros performed on 2015-02-12 04:56:38 has no hits.

BS14941.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:11 Download gff for BS14941.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4842-PA 1..780 17..796 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:19:10 Download gff for BS14941.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4842-RA 62..848 9..796 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:30:20 Download gff for BS14941.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4842-RA 62..848 9..796 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:30:20 Download gff for BS14941.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16368450..16368549 9..109 99 -> Plus
3L 16368608..16368835 110..337 100 -> Plus
3L 16368905..16369078 338..511 100 -> Plus
3L 16369148..16369432 512..796 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:19:10 Download gff for BS14941.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16361550..16361649 9..109 99 -> Plus
arm_3L 16361708..16361935 110..337 100 -> Plus
arm_3L 16362005..16362178 338..511 100 -> Plus
arm_3L 16362248..16362532 512..796 100   Plus

BS14941.pep Sequence

Translation from 16 to 795

> BS14941.pep
MDLAGKNVVYLGGFGGIGQKCVQELLQRPIKALAIFDLNANEQLLAKWKS
QHPDTDVFYHKLDITQKSDIDAAYKATAERFGHFDVVVNGSGLMNDRLVE
LTIQINLLGVINSTLTALEYMDKAKGGKGGLIVNISSVAGLQPTAIMAIY
SAAKTGVTTFTRAMANPYFYAHSGVGFLTICPGFTDTGLLEDIGNKTTFT
YDTPMLAMFNRVKRQKAEDCARNLVSAIETSKNGTVLMLEMGETTEVDMP
VMWKPQLDN*

BS14941.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG4842-PA 259 CG4842-PA 1..259 1..259 1335 100 Plus
CG18814-PB 267 CG18814-PB 1..260 1..259 1031 75 Plus
Pdh-PC 261 CG4899-PC 1..254 1..253 501 39 Plus
Pdh-PA 278 CG4899-PA 18..271 1..253 501 39 Plus
Pdh-PD 260 CG4899-PD 1..253 1..253 495 39.4 Plus