Clone Sequence Records
BS14941.complete Sequence
812 bp assembled on 2010-02-09
GenBank Submission: KX806212
> BS14941.complete
GAAGTTATCAGTCGACATGGACTTAGCCGGCAAAAATGTCGTTTACCTTG
GCGGATTCGGTGGAATAGGCCAAAAATGTGTGCAAGAACTGCTCCAGCGA
CCAATAAAGGCTCTAGCCATTTTCGATCTAAATGCTAATGAGCAGCTCTT
GGCTAAGTGGAAAAGCCAGCATCCCGATACGGACGTCTTCTACCACAAGC
TGGACATAACCCAGAAATCGGATATAGACGCGGCCTACAAGGCGACCGCC
GAGAGATTCGGACACTTCGATGTGGTGGTCAATGGCAGTGGACTGATGAA
CGATCGCCTGGTCGAACTCACTATTCAAATTAATCTGCTGGGAGTTATCA
ACAGCACTTTGACCGCCTTGGAGTACATGGACAAGGCCAAAGGCGGAAAG
GGTGGGCTCATAGTGAATATATCATCGGTGGCTGGACTGCAGCCCACAGC
TATAATGGCCATTTACTCGGCGGCCAAGACGGGAGTTACCACATTCACCA
GAGCCATGGCTAACCCCTACTTTTACGCCCACTCTGGTGTAGGCTTCCTT
ACCATCTGTCCCGGATTCACGGACACTGGGCTACTGGAGGATATTGGCAA
CAAGACGACATTCACCTACGACACTCCCATGCTGGCCATGTTCAACCGGG
TGAAGCGTCAGAAGGCCGAGGATTGTGCGAGGAACCTGGTCTCAGCAATA
GAGACGTCCAAAAATGGAACTGTCCTCATGCTGGAGATGGGTGAGACGAC
GGAGGTGGACATGCCAGTCATGTGGAAGCCACAGTTGGATAATTAAAAGC
TTTCTAGACCAT
BS14941.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:05:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4842-RA | 780 | CG4842-PA | 1..780 | 17..796 | 3900 | 100 | Plus |
CG18814-RB | 804 | CG18814-PB | 16..733 | 32..746 | 1200 | 78.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:05:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4842-RA | 934 | CG4842-RA | 65..848 | 13..796 | 3920 | 100 | Plus |
CG18814-RB | 956 | CG18814-RB | 66..783 | 32..746 | 1200 | 78.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:04:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16369148..16369432 | 512..796 | 1425 | 100 | Plus |
3L | 28110227 | 3L | 16368606..16368835 | 108..337 | 1150 | 100 | Plus |
3L | 28110227 | 3L | 16368904..16369078 | 337..511 | 875 | 100 | Plus |
3L | 28110227 | 3L | 16368453..16368550 | 13..110 | 490 | 100 | Plus |
3L | 28110227 | 3L | 16370060..16370251 | 146..337 | 480 | 83.3 | Plus |
3L | 28110227 | 3L | 16370307..16370479 | 339..511 | 385 | 81.5 | Plus |
3L | 28110227 | 3L | 16369891..16369952 | 32..93 | 220 | 90.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:04:59 has no hits.
BS14941.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:36 Download gff for
BS14941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4842-RA | 51..828 | 17..794 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:39 Download gff for
BS14941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4842-RA | 69..846 | 17..794 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:51 Download gff for
BS14941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4842-RA | 51..828 | 17..794 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:24 Download gff for
BS14941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4842-RA | 69..846 | 17..794 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:24 Download gff for
BS14941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16369148..16369430 | 512..794 | 100 | | Plus |
3L | 16368457..16368549 | 17..109 | 100 | -> | Plus |
3L | 16368608..16368835 | 110..337 | 100 | -> | Plus |
3L | 16368905..16369078 | 338..511 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:39 Download gff for
BS14941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16362005..16362178 | 338..511 | 100 | -> | Plus |
arm_3L | 16361557..16361649 | 17..109 | 100 | -> | Plus |
arm_3L | 16361708..16361935 | 110..337 | 100 | -> | Plus |
arm_3L | 16362248..16362530 | 512..794 | 100 | | Plus |
BS14941.3prime Sequence
747 bp (717 high quality bases) assembled on 2006-10-13
> BS14941.3prime
ATGGTCTAGAAAGCTTGTAATTATCCAACTGTGGCTTCCACATGACTGGC
ATGTCCACCTCCGTCGTCTCACCCATCTCCAGCATGAGGACAGTTCCATT
TTTGGACGTCTCTATTGCTGAGACCAGGTTCCTCGCACAATCCTCGGCCT
TCTGACGCTTCACCCGGTTGAACATGGCCAGCATGGGAGTGTCGTAGGTG
AATGTCGTCTTGTTGCCAATATCCTCCAGTAGCCCAGTGTCCGTGAATCC
GGGACAGATGGTAAGGAAGCCTACACCAGAGTGGGCGTAAAAGTAGGGGT
TAGCCATGGCTCTGGTGAATGTGGTAACTCCCGTCTTGGCCGCCGAGTAA
ATGGCCATTATAGCTGTGGGCTGCAGTCCAGCCACCGATGATATATTCAC
TATGAGCCCACCCTTTCCGCCTTTGGCCTTGTCCATGTACTCCAAGGCGG
TCAAAGTGCTGTTGATAACTCCCAGCAGATTAATTTGAATAGTGAGTTCG
ACCAGGCGATCGTTCATCAGTCCACTGCCATTGACCACCACATCGAAGTG
TCCGAATCTCTCGGCGGTCGCCTTGTAGGCCGCGTCTATATCCGATTTCT
GGGTTATGTCCAGCTTGTGGTAGAAGACGTCCGTATCGGGATGCTGGCTT
TTCCACTTAGCCAAGAGCTGCTCATTAGCATTTAGATCGAAAATGGCTAG
AGCCTTTATTGGTCGCTGGAACAGTTCTTGCACACATTTTTGGCCTA
BS14941.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4842-PA | 780 | CG4842-RA | 50..779 | 747..18 | 3625 | 99.8 | Minus |
CG18814-PA | 858 | CG18814-RA | 130..230 | 667..567 | 180 | 87.1 | Minus |
CG18814-PA | 858 | CG18814-RA | 244..275 | 553..522 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:07:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4842-RA | 934 | CG4842-RA | 118..847 | 747..18 | 3635 | 99.9 | Minus |
CG18814-RB | 956 | CG18814-RB | 100..783 | 747..67 | 1115 | 77.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:07:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16369148..16369431 | 301..18 | 1420 | 100 | Minus |
3L | 28110227 | 3L | 16368606..16368835 | 705..476 | 1150 | 100 | Minus |
3L | 28110227 | 3L | 16368904..16369078 | 476..302 | 875 | 100 | Minus |
3L | 28110227 | 3L | 16370060..16370251 | 667..476 | 480 | 83.3 | Minus |
3L | 28110227 | 3L | 16370307..16370479 | 474..302 | 385 | 81.5 | Minus |
3L | 28110227 | 3L | 16368506..16368550 | 747..703 | 210 | 97.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 19:07:40 has no hits.
BS14941.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:10 Download gff for
BS14941.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4842-PA | 51..780 | 16..746 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:11:01 Download gff for
BS14941.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4842-RA | 119..847 | 18..746 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:00:32 Download gff for
BS14941.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4842-RA | 119..847 | 18..746 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:00:32 Download gff for
BS14941.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16368507..16368549 | 704..746 | 97 | -> | Minus |
3L | 16368608..16368835 | 476..703 | 100 | -> | Minus |
3L | 16368905..16369078 | 302..475 | 100 | -> | Minus |
3L | 16369148..16369431 | 18..301 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:11:01 Download gff for
BS14941.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16361607..16361649 | 704..746 | 97 | -> | Minus |
arm_3L | 16361708..16361935 | 476..703 | 100 | -> | Minus |
arm_3L | 16362005..16362178 | 302..475 | 100 | -> | Minus |
arm_3L | 16362248..16362531 | 18..301 | 100 | | Minus |
BS14941.5prime Sequence
810 bp (771 high quality bases) assembled on 2006-10-13
> BS14941.5prime
AAAGTTATCAGTCGACATGGACTTAGCCGGCAAAAATGTCGTTTACCTTG
GCGGATTCGGTGGAATAGGCCAAAAATGTGTGCAAGAACTGCTCCAGCGA
CCAATAAAGGCTCTAGCCATTTTCGATCTAAATGCTAATGAGCAGCTCTT
GGCTAAGTGGAAAAGCCAGCATCCCGATACGGACGTCTTCTACCACAAGC
TGGACATAACCCAGAAATCGGATATAGACGCGGCCTACAAGGCGACCGCC
GAGAGATTCGGACACTTCGATGTGGTGGTCAATGGCAGTGGACTGATGAA
CGATCGCCTGGTCGAACTCACTATTCAAATTAATCTGCTGGGAGTTATCA
ACAGCACTTTGACCGCCTTGGAGTACATGGACAAGGCCAAAGGCGGAAAG
GGTGGGCTCATAGTGAATATATCATCGGTGGCTGGACTGCAGCCCACAGC
TATAATGGCCATTTACTCGGCGGCCAAGACGGGAGTTACCACATTCACCA
GAGCCATGGCTAACCCCTACTTTTACGCCCACTCTGGTGTAGGCTTCCTT
ACCATCTGTCCCGGATTCACGGACACTGGGCTACTGGAGGATATTGGCAA
CAAGACGACATTCACCTACGACACTCCCATGCTGGCCATGTTCAACCGGG
TGAAGCGTCAGAAGGCCGAGGATTGTGCGAGGAACCTGGTCTCAGCAATA
GAGACGTCCAAAAATGGAACTGTCCTCATGCTGGAGATGGGTGAGACGAC
GGAGGTGGACATGCCAGTCATGTGGAAGCCACAGTTGGATAATTAAAAGC
TTTCTAGAAC
BS14941.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:31:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4842-PA | 780 | CG4842-RA | 1..780 | 17..796 | 3900 | 100 | Plus |
CG18814-PA | 858 | CG18814-RA | 130..230 | 146..246 | 180 | 87.1 | Plus |
CG18814-PA | 858 | CG18814-RA | 16..77 | 32..93 | 160 | 90.3 | Plus |
CG18814-PA | 858 | CG18814-RA | 244..275 | 260..291 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:56:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4842-RA | 934 | CG4842-RA | 65..848 | 13..796 | 3920 | 100 | Plus |
CG18814-RB | 956 | CG18814-RB | 66..783 | 32..746 | 1225 | 78.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:56:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16369148..16369432 | 512..796 | 1425 | 100 | Plus |
3L | 28110227 | 3L | 16368606..16368835 | 108..337 | 1150 | 100 | Plus |
3L | 28110227 | 3L | 16368904..16369078 | 337..511 | 875 | 100 | Plus |
3L | 28110227 | 3L | 16368453..16368550 | 13..110 | 490 | 100 | Plus |
3L | 28110227 | 3L | 16370060..16370251 | 146..337 | 480 | 83.3 | Plus |
3L | 28110227 | 3L | 16370307..16370479 | 339..511 | 385 | 81.5 | Plus |
3L | 28110227 | 3L | 16369891..16369952 | 32..93 | 220 | 90.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:56:38 has no hits.
BS14941.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:11 Download gff for
BS14941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4842-PA | 1..780 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:19:10 Download gff for
BS14941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4842-RA | 62..848 | 9..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:30:20 Download gff for
BS14941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4842-RA | 62..848 | 9..796 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:30:20 Download gff for
BS14941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16368450..16368549 | 9..109 | 99 | -> | Plus |
3L | 16368608..16368835 | 110..337 | 100 | -> | Plus |
3L | 16368905..16369078 | 338..511 | 100 | -> | Plus |
3L | 16369148..16369432 | 512..796 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:19:10 Download gff for
BS14941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16361550..16361649 | 9..109 | 99 | -> | Plus |
arm_3L | 16361708..16361935 | 110..337 | 100 | -> | Plus |
arm_3L | 16362005..16362178 | 338..511 | 100 | -> | Plus |
arm_3L | 16362248..16362532 | 512..796 | 100 | | Plus |
BS14941.pep Sequence
Translation from 16 to 795
> BS14941.pep
MDLAGKNVVYLGGFGGIGQKCVQELLQRPIKALAIFDLNANEQLLAKWKS
QHPDTDVFYHKLDITQKSDIDAAYKATAERFGHFDVVVNGSGLMNDRLVE
LTIQINLLGVINSTLTALEYMDKAKGGKGGLIVNISSVAGLQPTAIMAIY
SAAKTGVTTFTRAMANPYFYAHSGVGFLTICPGFTDTGLLEDIGNKTTFT
YDTPMLAMFNRVKRQKAEDCARNLVSAIETSKNGTVLMLEMGETTEVDMP
VMWKPQLDN*
BS14941.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:14:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4842-PA | 259 | CG4842-PA | 1..259 | 1..259 | 1335 | 100 | Plus |
CG18814-PB | 267 | CG18814-PB | 1..260 | 1..259 | 1031 | 75 | Plus |
Pdh-PC | 261 | CG4899-PC | 1..254 | 1..253 | 501 | 39 | Plus |
Pdh-PA | 278 | CG4899-PA | 18..271 | 1..253 | 501 | 39 | Plus |
Pdh-PD | 260 | CG4899-PD | 1..253 | 1..253 | 495 | 39.4 | Plus |