Clone BS14948 Report

Search the DGRC for BS14948

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:149
Well:48
Vector:pDNR-Dual
Associated Gene/Transcriptrush-RA
Protein status:BS14948.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14948.3prime Sequence

782 bp (701 high quality bases) assembled on 2006-10-13

> BS14948.3prime
ATGGTCTAGAAAGCTTTCAACAGTGGCTGCCCGTCGTCGCAACGGCAGCC
GGGGAGCTTTGGACGCTCGGTGTCACCTGGGGAGCCTCCAAGCTGCCAGT
GGTGGCGGAGGAGGGCGAGGTTATCGTCGAGGAGTCTTCGACGGCGGATA
GCACGCTGTTGTCCCCGTAGAAGCGCGGCTCATCGTGCGACTCGCCACCA
GGGGAGGCAGTCTCCTCGTCGGAGTCCTCATCGTTGGAGCTGTCGCCGGC
TGTTGTGTTGAGCTTGTTGCCGGAGGCAGCGCCGGTAGCCGCTGCCGAGT
CCTCGCCAGAGCCAAGGGAACTTGGCACGTGCTTCAAGCGCTCGTAGCAG
GCGTCACAGACGCGCAACGCCTTGGTGCTCTGCTGCGGAAGCAGGAACTT
CTTGGCCGAGCAGCCGGCGCAGACAACAGCGCCGCAGTTGCGGCAGTGAT
GCCGGCGCTGGATGAAAGTAAACTGCGTCTTCTTGCAGTGCATGCAGACG
CTGGCGTCGGTGTCGGGCACCCAAACGGCGGCGTGGTTCTCCACCGGCTT
CTTGCCGCTCTTGCGCAGCAGGTCCTCCACGCACTTGTTGATGTGAGCCA
TCCACTCCTGCTTCTCGGTGCTGGTGGCCGCAAACACCACAAACGACTTG
GTGGTGGTGCGGATGTACCAGCCGTTTCTGTACGTCTGGTTGTCGGCAAT
CGATTCCAGCGAGACCTCCTCCAGCGGCATGATATGCTGCTTGTTGTACT
TCTTCTTGCCAATCACTATGTTTCCGTACACC

BS14948.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG14782-PA 951 CG14782-RA 186..951 782..17 3830 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
rush-RB 2672 CG14782-RB 824..1590 782..16 3835 100 Minus
rush-RA 2082 CG14782-RA 873..1639 782..16 3835 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:22:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1479424..1480190 782..16 3835 100 Minus
Blast to na_te.dros performed on 2015-01-31 10:22:35 has no hits.

BS14948.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:16 Download gff for BS14948.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14782-PA 186..951 17..782 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:39 Download gff for BS14948.3prime
Subject Subject Range Query Range Percent Splice Strand
rush-RA 873..1639 16..782 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:33 Download gff for BS14948.3prime
Subject Subject Range Query Range Percent Splice Strand
rush-RA 873..1639 16..782 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:33 Download gff for BS14948.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1479424..1480190 16..782 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:39 Download gff for BS14948.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1373457..1374223 16..782 100   Minus

BS14948.5prime Sequence

836 bp (732 high quality bases) assembled on 2006-10-13

> BS14948.5prime
GAAGTTATCAGTCGACATGGTGGACCGTCTGGTCAACTCGGAGGCCAACA
CGCGCCGCATCGCCTCCGTGGAGAACTGCTTCGGGAGCTCGGGCGTGCCG
CTGGCGATGCAAGGTCGCGTTCTGGTGGGCGAGGGCGTGCTGACCAAGAT
GTGTCGCAAGCGGCCCAAGTCGCGCCAGTTCTTCCTGTTCAACGACATCC
TGGTGTACGGAAACATAGTGATTGGCAAGAAGAAGTACAACAAGCAGCAT
ATCATGCCGCTGGAGGAGGTCTCGCTGGAATCGATTGCCGACAACCAGAC
GTACAGAAACGGCTGGTACATCCGCACCACCACCAAGTCGTTTGTGGTGT
TTGCGGCCACCAGCACCGAGAAGCAGGAGTGGATGGCTCACATCAACAAG
TGCGTGGAGGACCTGCTGCGCAAGAGCGGCAAGAAGCCGGTGGAGAACCA
CGCCGCCGTTTGGGTGCCCGACACCGACGCCAGCGTCTGCATGCACTGCA
AGAAGACGCAGTTTACTTTCATCCAGCGCCGGCATCACTGCCGCAACTGC
GGCGCTGTTGTCTGCGCCGGCTGCTCGGCCAAGAAGTTCCTGCTTCCGCA
GCAGAGCACCAAGGCGTTGCGCGTCTGTGACGCCTGCTACGAGCGCTTGA
AGCACGTGCCAAGTTCCCTTGGCTCTGGCGAGGACTCGGCAGCGGCTACC
GGCGCTGCCTCCGGCAACAAGCTCAACACAACAGCCGGCGACAGCTCCAA
CGATGAGGACTCCGACGAGGAGACTGCCTCCCCTGGTGGCGAGTCGCACG
ATGAGCCGCGCTTCTACGGGGACAACAGCGTGCTAT

BS14948.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG14782-PA 951 CG14782-RA 1..820 17..836 4100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
rush-RB 2672 CG14782-RB 634..1458 12..836 4110 99.9 Plus
rush-RA 2082 CG14782-RA 683..1507 12..836 4110 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1479234..1480058 12..836 4110 99.9 Plus
Blast to na_te.dros performed on 2015-02-12 04:05:30 has no hits.

BS14948.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:17 Download gff for BS14948.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14782-PA 1..820 17..836 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:45 Download gff for BS14948.5prime
Subject Subject Range Query Range Percent Splice Strand
rush-RA 678..1507 6..836 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:40 Download gff for BS14948.5prime
Subject Subject Range Query Range Percent Splice Strand
rush-RA 678..1507 6..836 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:40 Download gff for BS14948.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1479229..1480058 6..836 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:45 Download gff for BS14948.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1373262..1374091 6..836 99   Plus

BS14948.complete Sequence

983 bp assembled on 2006-11-01

GenBank Submission: FJ637837

> BS14948.complete
GAAGTTATCAGTCGACATGGTGGACCGTCTGGTCAACTCGGAGGCCAACA
CGCGCCGCATCGCCTCCGTGGAGAACTGCTTCGGGAGCTCGGGCGTGCCG
CTGGCGATGCAAGGTCGCGTTCTGGTGGGCGAGGGCGTGCTGACCAAGAT
GTGTCGCAAGCGGCCCAAGTCGCGCCAGTTCTTCCTGTTCAACGACATCC
TGGTGTACGGAAACATAGTGATTGGCAAGAAGAAGTACAACAAGCAGCAT
ATCATGCCGCTGGAGGAGGTCTCGCTGGAATCGATTGCCGACAACCAGAC
GTACAGAAACGGCTGGTACATCCGCACCACCACCAAGTCGTTTGTGGTGT
TTGCGGCCACCAGCACCGAGAAGCAGGAGTGGATGGCTCACATCAACAAG
TGCGTGGAGGACCTGCTGCGCAAGAGCGGCAAGAAGCCGGTGGAGAACCA
CGCCGCCGTTTGGGTGCCCGACACCGACGCCAGCGTCTGCATGCACTGCA
AGAAGACGCAGTTTACTTTCATCCAGCGCCGGCATCACTGCCGCAACTGC
GGCGCTGTTGTCTGCGCCGGCTGCTCGGCCAAGAAGTTCCTGCTTCCGCA
GCAGAGCACCAAGGCGTTGCGCGTCTGTGACGCCTGCTACGAGCGCTTGA
AGCACGTGCCAAGTTCCCTTGGCTCTGGCGAGGACTCGGCAGCGGCTACC
GGCGCTGCCTCCGGCAACAAGCTCAACACAACAGCCGGCGACAGCTCCAA
CGATGAGGACTCCGACGAGGAGACTGCCTCCCCTGGTGGCGAGTCGCACG
ATGAGCCGCGCTTCTACGGGGACAACAGCGTGCTATCCGCCGTCGAAGAC
TCCTCGACGATAACCTCGCCCTCCTCCGCCACCACTGGCAGCTTGGAGGC
TCCCCAGGTGACACCGAGCGTCCAAAGCTCCCCGGCTGCCGTTGCGACGA
CGGGCAGCCACTGTTGAAAGCTTTCTAGACCAT

BS14948.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:32:49
Subject Length Description Subject Range Query Range Score Percent Strand
rush-RB 951 CG14782-PB 1..951 17..967 4755 100 Plus
rush-RA 951 CG14782-PA 1..951 17..967 4755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:51
Subject Length Description Subject Range Query Range Score Percent Strand
rush-RB 2672 CG14782-RB 634..1590 12..968 4770 99.9 Plus
rush-RA 2082 CG14782-RA 683..1639 12..968 4770 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1479234..1480190 12..968 4770 99.9 Plus
Blast to na_te.dros performed on 2014-11-27 14:32:48 has no hits.

BS14948.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:06 Download gff for BS14948.complete
Subject Subject Range Query Range Percent Splice Strand
CG14782-RA 1..951 17..967 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:49 Download gff for BS14948.complete
Subject Subject Range Query Range Percent Splice Strand
CG14782-RA 678..1639 6..968 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:29:55 Download gff for BS14948.complete
Subject Subject Range Query Range Percent Splice Strand
rush-RA 688..1637 17..966 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:06 Download gff for BS14948.complete
Subject Subject Range Query Range Percent Splice Strand
CG14782-RA 678..1639 6..968 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:45 Download gff for BS14948.complete
Subject Subject Range Query Range Percent Splice Strand
rush-RA 688..1637 17..966 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:45 Download gff for BS14948.complete
Subject Subject Range Query Range Percent Splice Strand
X 1479239..1480188 17..966 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:29:55 Download gff for BS14948.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1373272..1374221 17..966 100   Plus

BS14948.pep Sequence

Translation from 16 to 966

> BS14948.pep
MVDRLVNSEANTRRIASVENCFGSSGVPLAMQGRVLVGEGVLTKMCRKRP
KSRQFFLFNDILVYGNIVIGKKKYNKQHIMPLEEVSLESIADNQTYRNGW
YIRTTTKSFVVFAATSTEKQEWMAHINKCVEDLLRKSGKKPVENHAAVWV
PDTDASVCMHCKKTQFTFIQRRHHCRNCGAVVCAGCSAKKFLLPQQSTKA
LRVCDACYERLKHVPSSLGSGEDSAAATGAASGNKLNTTAGDSSNDEDSD
EETASPGGESHDEPRFYGDNSVLSAVEDSSTITSPSSATTGSLEAPQVTP
SVQSSPAAVATTGSHC*

BS14948.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
rush-PB 316 CG14782-PB 1..316 1..316 1655 100 Plus
rush-PA 316 CG14782-PA 1..316 1..316 1655 100 Plus
CG6051-PD 988 CG6051-PD 905..973 149..219 171 50 Plus
CG6051-PC 989 CG6051-PC 906..974 149..219 171 50 Plus
CG6051-PB 989 CG6051-PB 906..974 149..219 171 50 Plus