Clone Sequence Records
BS14948.3prime Sequence
782 bp (701 high quality bases) assembled on 2006-10-13
> BS14948.3prime
ATGGTCTAGAAAGCTTTCAACAGTGGCTGCCCGTCGTCGCAACGGCAGCC
GGGGAGCTTTGGACGCTCGGTGTCACCTGGGGAGCCTCCAAGCTGCCAGT
GGTGGCGGAGGAGGGCGAGGTTATCGTCGAGGAGTCTTCGACGGCGGATA
GCACGCTGTTGTCCCCGTAGAAGCGCGGCTCATCGTGCGACTCGCCACCA
GGGGAGGCAGTCTCCTCGTCGGAGTCCTCATCGTTGGAGCTGTCGCCGGC
TGTTGTGTTGAGCTTGTTGCCGGAGGCAGCGCCGGTAGCCGCTGCCGAGT
CCTCGCCAGAGCCAAGGGAACTTGGCACGTGCTTCAAGCGCTCGTAGCAG
GCGTCACAGACGCGCAACGCCTTGGTGCTCTGCTGCGGAAGCAGGAACTT
CTTGGCCGAGCAGCCGGCGCAGACAACAGCGCCGCAGTTGCGGCAGTGAT
GCCGGCGCTGGATGAAAGTAAACTGCGTCTTCTTGCAGTGCATGCAGACG
CTGGCGTCGGTGTCGGGCACCCAAACGGCGGCGTGGTTCTCCACCGGCTT
CTTGCCGCTCTTGCGCAGCAGGTCCTCCACGCACTTGTTGATGTGAGCCA
TCCACTCCTGCTTCTCGGTGCTGGTGGCCGCAAACACCACAAACGACTTG
GTGGTGGTGCGGATGTACCAGCCGTTTCTGTACGTCTGGTTGTCGGCAAT
CGATTCCAGCGAGACCTCCTCCAGCGGCATGATATGCTGCTTGTTGTACT
TCTTCTTGCCAATCACTATGTTTCCGTACACC
BS14948.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14782-PA | 951 | CG14782-RA | 186..951 | 782..17 | 3830 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:22:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rush-RB | 2672 | CG14782-RB | 824..1590 | 782..16 | 3835 | 100 | Minus |
rush-RA | 2082 | CG14782-RA | 873..1639 | 782..16 | 3835 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:22:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1479424..1480190 | 782..16 | 3835 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:22:35 has no hits.
BS14948.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:16 Download gff for
BS14948.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14782-PA | 186..951 | 17..782 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:39 Download gff for
BS14948.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rush-RA | 873..1639 | 16..782 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:33 Download gff for
BS14948.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rush-RA | 873..1639 | 16..782 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:33 Download gff for
BS14948.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1479424..1480190 | 16..782 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:39 Download gff for
BS14948.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1373457..1374223 | 16..782 | 100 | | Minus |
BS14948.5prime Sequence
836 bp (732 high quality bases) assembled on 2006-10-13
> BS14948.5prime
GAAGTTATCAGTCGACATGGTGGACCGTCTGGTCAACTCGGAGGCCAACA
CGCGCCGCATCGCCTCCGTGGAGAACTGCTTCGGGAGCTCGGGCGTGCCG
CTGGCGATGCAAGGTCGCGTTCTGGTGGGCGAGGGCGTGCTGACCAAGAT
GTGTCGCAAGCGGCCCAAGTCGCGCCAGTTCTTCCTGTTCAACGACATCC
TGGTGTACGGAAACATAGTGATTGGCAAGAAGAAGTACAACAAGCAGCAT
ATCATGCCGCTGGAGGAGGTCTCGCTGGAATCGATTGCCGACAACCAGAC
GTACAGAAACGGCTGGTACATCCGCACCACCACCAAGTCGTTTGTGGTGT
TTGCGGCCACCAGCACCGAGAAGCAGGAGTGGATGGCTCACATCAACAAG
TGCGTGGAGGACCTGCTGCGCAAGAGCGGCAAGAAGCCGGTGGAGAACCA
CGCCGCCGTTTGGGTGCCCGACACCGACGCCAGCGTCTGCATGCACTGCA
AGAAGACGCAGTTTACTTTCATCCAGCGCCGGCATCACTGCCGCAACTGC
GGCGCTGTTGTCTGCGCCGGCTGCTCGGCCAAGAAGTTCCTGCTTCCGCA
GCAGAGCACCAAGGCGTTGCGCGTCTGTGACGCCTGCTACGAGCGCTTGA
AGCACGTGCCAAGTTCCCTTGGCTCTGGCGAGGACTCGGCAGCGGCTACC
GGCGCTGCCTCCGGCAACAAGCTCAACACAACAGCCGGCGACAGCTCCAA
CGATGAGGACTCCGACGAGGAGACTGCCTCCCCTGGTGGCGAGTCGCACG
ATGAGCCGCGCTTCTACGGGGACAACAGCGTGCTAT
BS14948.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14782-PA | 951 | CG14782-RA | 1..820 | 17..836 | 4100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:05:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rush-RB | 2672 | CG14782-RB | 634..1458 | 12..836 | 4110 | 99.9 | Plus |
rush-RA | 2082 | CG14782-RA | 683..1507 | 12..836 | 4110 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:05:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1479234..1480058 | 12..836 | 4110 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:05:30 has no hits.
BS14948.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:17 Download gff for
BS14948.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14782-PA | 1..820 | 17..836 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:45 Download gff for
BS14948.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rush-RA | 678..1507 | 6..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:40 Download gff for
BS14948.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rush-RA | 678..1507 | 6..836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:40 Download gff for
BS14948.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1479229..1480058 | 6..836 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:45 Download gff for
BS14948.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1373262..1374091 | 6..836 | 99 | | Plus |
BS14948.complete Sequence
983 bp assembled on 2006-11-01
GenBank Submission: FJ637837
> BS14948.complete
GAAGTTATCAGTCGACATGGTGGACCGTCTGGTCAACTCGGAGGCCAACA
CGCGCCGCATCGCCTCCGTGGAGAACTGCTTCGGGAGCTCGGGCGTGCCG
CTGGCGATGCAAGGTCGCGTTCTGGTGGGCGAGGGCGTGCTGACCAAGAT
GTGTCGCAAGCGGCCCAAGTCGCGCCAGTTCTTCCTGTTCAACGACATCC
TGGTGTACGGAAACATAGTGATTGGCAAGAAGAAGTACAACAAGCAGCAT
ATCATGCCGCTGGAGGAGGTCTCGCTGGAATCGATTGCCGACAACCAGAC
GTACAGAAACGGCTGGTACATCCGCACCACCACCAAGTCGTTTGTGGTGT
TTGCGGCCACCAGCACCGAGAAGCAGGAGTGGATGGCTCACATCAACAAG
TGCGTGGAGGACCTGCTGCGCAAGAGCGGCAAGAAGCCGGTGGAGAACCA
CGCCGCCGTTTGGGTGCCCGACACCGACGCCAGCGTCTGCATGCACTGCA
AGAAGACGCAGTTTACTTTCATCCAGCGCCGGCATCACTGCCGCAACTGC
GGCGCTGTTGTCTGCGCCGGCTGCTCGGCCAAGAAGTTCCTGCTTCCGCA
GCAGAGCACCAAGGCGTTGCGCGTCTGTGACGCCTGCTACGAGCGCTTGA
AGCACGTGCCAAGTTCCCTTGGCTCTGGCGAGGACTCGGCAGCGGCTACC
GGCGCTGCCTCCGGCAACAAGCTCAACACAACAGCCGGCGACAGCTCCAA
CGATGAGGACTCCGACGAGGAGACTGCCTCCCCTGGTGGCGAGTCGCACG
ATGAGCCGCGCTTCTACGGGGACAACAGCGTGCTATCCGCCGTCGAAGAC
TCCTCGACGATAACCTCGCCCTCCTCCGCCACCACTGGCAGCTTGGAGGC
TCCCCAGGTGACACCGAGCGTCCAAAGCTCCCCGGCTGCCGTTGCGACGA
CGGGCAGCCACTGTTGAAAGCTTTCTAGACCAT
BS14948.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:32:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rush-RB | 951 | CG14782-PB | 1..951 | 17..967 | 4755 | 100 | Plus |
rush-RA | 951 | CG14782-PA | 1..951 | 17..967 | 4755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rush-RB | 2672 | CG14782-RB | 634..1590 | 12..968 | 4770 | 99.9 | Plus |
rush-RA | 2082 | CG14782-RA | 683..1639 | 12..968 | 4770 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1479234..1480190 | 12..968 | 4770 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:32:48 has no hits.
BS14948.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:06 Download gff for
BS14948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14782-RA | 1..951 | 17..967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:49 Download gff for
BS14948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14782-RA | 678..1639 | 6..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:29:55 Download gff for
BS14948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rush-RA | 688..1637 | 17..966 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:06 Download gff for
BS14948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14782-RA | 678..1639 | 6..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:45 Download gff for
BS14948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rush-RA | 688..1637 | 17..966 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:45 Download gff for
BS14948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1479239..1480188 | 17..966 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:29:55 Download gff for
BS14948.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1373272..1374221 | 17..966 | 100 | | Plus |
BS14948.pep Sequence
Translation from 16 to 966
> BS14948.pep
MVDRLVNSEANTRRIASVENCFGSSGVPLAMQGRVLVGEGVLTKMCRKRP
KSRQFFLFNDILVYGNIVIGKKKYNKQHIMPLEEVSLESIADNQTYRNGW
YIRTTTKSFVVFAATSTEKQEWMAHINKCVEDLLRKSGKKPVENHAAVWV
PDTDASVCMHCKKTQFTFIQRRHHCRNCGAVVCAGCSAKKFLLPQQSTKA
LRVCDACYERLKHVPSSLGSGEDSAAATGAASGNKLNTTAGDSSNDEDSD
EETASPGGESHDEPRFYGDNSVLSAVEDSSTITSPSSATTGSLEAPQVTP
SVQSSPAAVATTGSHC*
BS14948.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rush-PB | 316 | CG14782-PB | 1..316 | 1..316 | 1655 | 100 | Plus |
rush-PA | 316 | CG14782-PA | 1..316 | 1..316 | 1655 | 100 | Plus |
CG6051-PD | 988 | CG6051-PD | 905..973 | 149..219 | 171 | 50 | Plus |
CG6051-PC | 989 | CG6051-PC | 906..974 | 149..219 | 171 | 50 | Plus |
CG6051-PB | 989 | CG6051-PB | 906..974 | 149..219 | 171 | 50 | Plus |