Clone BS14950 Report

Search the DGRC for BS14950

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:149
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG13319-RA
Protein status:BS14950.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14950.5prime Sequence

429 bp (429 high quality bases) assembled on 2006-10-13

> BS14950.5prime
GAAGTTATCAGTCGACATGGATAGCGTTCCTGCGAATGTTGTGCCTGCGA
AGGAGTCTGGTGGTTTCACCTCACATTGCGTCCACTTGGCGGCGGGTCCC
TCGCAATTCACCGTGCGCGCCCTGAAAATGCAAGGCAGCACCATGCTGAT
CATAAACCCCAAGGGATTGGAGGTTTTCGAGGAGCTAGCGGTGGCCATGC
CCTCTCGCAATCCCGCCAGCAGCCAGTCCCTATCCTCCACAATCCTGGGC
GGACACGGGCAGACCGACTCATCTGTTCTGGCCGCCAAATTGAGTAAACG
CTACTGCCGCCAGTTCTACGTGAGCCTTAATCTCAAACTGGATCGATTAA
TGGGCCCTCTGTTCGAGAAGACGCTAGTCACCTACATGCAAGACCATCTG
GAGCACTTCGCTTGAAAGCTTTCTAGACC

BS14950.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG13319-PA 399 CG13319-RA 1..399 17..415 1995 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG13319-RB 687 CG13319-RB 46..444 17..415 1995 100 Plus
CG13319-RA 691 CG13319-RA 46..444 17..415 1995 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12923949..12924347 17..415 1995 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:06:06 has no hits.

BS14950.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:17 Download gff for BS14950.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13319-PA 1..399 17..415 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:48 Download gff for BS14950.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13319-RA 37..444 8..415 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:04 Download gff for BS14950.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13319-RA 37..444 8..415 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:04 Download gff for BS14950.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12923940..12924347 8..415 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:48 Download gff for BS14950.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8811445..8811852 8..415 99   Plus

BS14950.3prime Sequence

429 bp (429 high quality bases) assembled on 2006-10-13

> BS14950.3prime
ATGGTCTAGAAAGCTTTCAAGCGAAGTGCTCCAGATGGTCTTGCATGTAG
GTGACTAGCGTCTTCTCGAACAGAGGGCCCATTAATCGATCCAGTTTGAG
ATTAAGGCTCACGTAGAACTGGCGGCAGTAGCGTTTACTCAATTTGGCGG
CCAGAACAGATGAGTCGGTCTGCCCGTGTCCGCCCAGGATTGTGGAGGAT
AGGGACTGGCTGCTGGCGGGATTGCGAGAGGGCATGGCCACCGCTAGCTC
CTCGAAAACCTCCAATCCCTTGGGGTTTATGATCAGCATGGTGCTGCCTT
GCATTTTCAGGGCGCGCACGGTGAATTGCGAGGGACCCGCCGCCAAGTGG
ACGCAATGTGAGGTGAAACCACCAGACTCCTTCGCAGGCACAACATTCGC
AGGAACGCTATCCATGTCGACTGATAACT

BS14950.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13319-PA 399 CG13319-RA 1..399 415..17 1995 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:05:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG13319-RB 687 CG13319-RB 46..444 415..17 1995 100 Minus
CG13319-RA 691 CG13319-RA 46..444 415..17 1995 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:05:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12923949..12924347 415..17 1995 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:05:38 has no hits.

BS14950.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:17 Download gff for BS14950.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13319-PA 1..399 17..415 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:46 Download gff for BS14950.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13319-RA 37..444 17..424 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:52 Download gff for BS14950.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13319-RA 37..444 17..424 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:52 Download gff for BS14950.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12923940..12924347 17..424 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:46 Download gff for BS14950.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8811445..8811852 17..424 99   Minus

BS14950.complete Sequence

431 bp assembled on 2006-11-01

GenBank Submission: FJ637838

> BS14950.complete
GAAGTTATCAGTCGACATGGATAGCGTTCCTGCGAATGTTGTGCCTGCGA
AGGAGTCTGGTGGTTTCACCTCACATTGCGTCCACTTGGCGGCGGGTCCC
TCGCAATTCACCGTGCGCGCCCTGAAAATGCAAGGCAGCACCATGCTGAT
CATAAACCCCAAGGGATTGGAGGTTTTCGAGGAGCTAGCGGTGGCCATGC
CCTCTCGCAATCCCGCCAGCAGCCAGTCCCTATCCTCCACAATCCTGGGC
GGACACGGGCAGACCGACTCATCTGTTCTGGCCGCCAAATTGAGTAAACG
CTACTGCCGCCAGTTCTACGTGAGCCTTAATCTCAAACTGGATCGATTAA
TGGGCCCTCTGTTCGAGAAGACGCTAGTCACCTACATGCAAGACCATCTG
GAGCACTTCGCTTGAAAGCTTTCTAGACCAT

BS14950.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:58:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG13319-RB 399 CG13319-PB 1..399 17..415 1995 100 Plus
CG13319-RA 399 CG13319-PA 1..399 17..415 1995 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG13319-RB 687 CG13319-RB 46..444 17..415 1995 100 Plus
CG13319-RA 691 CG13319-RA 46..444 17..415 1995 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:58:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12923949..12924347 17..415 1995 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:58:11 has no hits.

BS14950.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:07 Download gff for BS14950.complete
Subject Subject Range Query Range Percent Splice Strand
CG13319-RA 1..399 17..415 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:50 Download gff for BS14950.complete
Subject Subject Range Query Range Percent Splice Strand
CG13319-RA 37..444 8..415 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:35:22 Download gff for BS14950.complete
Subject Subject Range Query Range Percent Splice Strand
CG13319-RA 46..443 17..414 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:07 Download gff for BS14950.complete
Subject Subject Range Query Range Percent Splice Strand
CG13319-RA 37..444 8..415 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:22 Download gff for BS14950.complete
Subject Subject Range Query Range Percent Splice Strand
CG13319-RA 46..443 17..414 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:22 Download gff for BS14950.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12923949..12924346 17..414 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:22 Download gff for BS14950.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8811454..8811851 17..414 100   Plus

BS14950.pep Sequence

Translation from 16 to 414

> BS14950.pep
MDSVPANVVPAKESGGFTSHCVHLAAGPSQFTVRALKMQGSTMLIINPKG
LEVFEELAVAMPSRNPASSQSLSSTILGGHGQTDSSVLAAKLSKRYCRQF
YVSLNLKLDRLMGPLFEKTLVTYMQDHLEHFA*

BS14950.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG13319-PB 132 CG13319-PB 1..132 1..132 671 100 Plus
CG13319-PA 132 CG13319-PA 1..132 1..132 671 100 Plus