Clone Sequence Records
BS14954.complete Sequence
785 bp assembled on 2010-02-09
GenBank Submission: KX801315
> BS14954.complete
GAAGTTATCAGTCGACATGTATTGTACTATTGGATTGCTCAGCCTGCTGG
CCTTGGGATGCAGTGCAGCTCCCACGGATAAAAACTACTTTGCTGATTTG
CCAAAATGCTCGACTGAAGAGGATCAGCTGGGTGAGTGCGTGAAGCAGCT
GTTTAACACATTGACTCCGCGCCTCAAGGACGGTAATCCAGAGTTGAGAA
TCGAGCCCTACGAACCTTTGCACCTCAACCGAACCAGCTTCCAATACTCT
AGTGGCACTGTCAATGGTCGCATCACCGTTCGCAATGCCAAGATTTATGG
CTTCTCCTCCAATCGGGCCAAAGAGGTGTCCGTCAAACTCAATGGCGACA
AGGTGAAACTCCGTCTGGTCACCCAAATGCCCAAGTTGAACATTGTGGGC
AGCTATAAGGCCGACATGCAGGTGAATCAGCTGCAACTGAAGCCCAAGGG
TGAATTCAACGTAACGCTCTTGGATGTGGAGGCCATAACGGTGACCGATG
GTGAGGTCTACGAGAAGGATGGTCATCGGTTTTTCCGCCTCAAGAATATC
GACTCAAAGCCAAAGATCAAGGACTTGGTTATCAAGGCAAACGGAATATT
TGCAGATCCTGAACTGGATAAAATCGCTCTGAATGTGGCTAATCAGTATT
GGCGCGATATTTACGGAATAATGTTGCCTGAGACTCGACAGTTTTGGCAA
CCCCTTATGTTGCGAATGTTCAACGAGGCATTCGAACTAGTTCCCATCGA
CCAGTTTCTCAAGGAGTAGAAGCTTTCTAGACCAT
BS14954.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:51:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5945-RB | 753 | CG5945-PB | 1..753 | 17..769 | 3765 | 100 | Plus |
CG5945-RA | 753 | CG5945-PA | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:51:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5945-RB | 1079 | CG5945-RB | 209..961 | 17..769 | 3765 | 100 | Plus |
CG5945-RA | 903 | CG5945-RA | 79..831 | 17..769 | 3765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:50:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13240335..13240710 | 95..470 | 1880 | 100 | Plus |
2L | 23513712 | 2L | 13241503..13241655 | 617..769 | 765 | 100 | Plus |
2L | 23513712 | 2L | 13240763..13240909 | 471..617 | 735 | 100 | Plus |
2L | 23513712 | 2L | 13240197..13240275 | 17..95 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:51:00 has no hits.
BS14954.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:46 Download gff for
BS14954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5945-RA | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:23 Download gff for
BS14954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5945-RA | 65..817 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:05 Download gff for
BS14954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5945-RA | 79..831 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:30:25 Download gff for
BS14954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5945-RA | 65..817 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:25 Download gff for
BS14954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5945-RA | 79..831 | 17..769 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:32:25 Download gff for
BS14954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13240197..13240275 | 17..95 | 100 | -> | Plus |
2L | 13240336..13240710 | 96..470 | 100 | -> | Plus |
2L | 13240763..13240909 | 471..617 | 100 | -> | Plus |
2L | 13241504..13241655 | 618..769 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:05 Download gff for
BS14954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13241504..13241655 | 618..769 | 100 | | Plus |
arm_2L | 13240197..13240275 | 17..95 | 100 | -> | Plus |
arm_2L | 13240336..13240710 | 96..470 | 100 | -> | Plus |
arm_2L | 13240763..13240909 | 471..617 | 100 | -> | Plus |
BS14954.3prime Sequence
783 bp (726 high quality bases) assembled on 2006-10-13
> BS14954.3prime
ATGGTCTAGAAAGCTTCTACTCCTTGAGAAACTGGTCGATGGGAACTAGT
TCGAATGCCTCGTTGAACATTCGCAACATAAGGGGTTGCCAAAACTGTCG
AGTCTCAGGCAACATTATTCCGTAAATATCGCGCCAATACTGATTAGCCA
CATTCAGAGCGATTTTATCCAGTTCAGGATCTGCAAATATTCCGTTTGCC
TTGATAACCAAGTCCTTGATCTTTGGCTTTGAGTCGATATTCTTGAGGCG
GAAAAACCGATGACCATCCTTCTCGTAGACCTCACCATCGGTCACCGTTA
TGGCCTCCACATCCAAGAGCGTTACGTTGAATTCACCCTTGGGCTTCAGT
TGCAGCTGATTCACCTGCATGTCGGCCTTATAGCTGCCCACAATGTTCAA
CTTGGGCATTTGGGTGACCAGACGGAGTTTCACCTTGTCGCCATTGAGTT
TGACGGACACCTCTTTGGCCCGATTGGAGGAGAAGCCATAAATCTTGGCA
TTGCGAACGGTGATGCGACCATTGACAGTGCCACTAGAGTATTGGAAGCT
GGTTCGGTTGAGGTGCAAAGGTTCGTAGGGCTCGATTCTCAACTCTGGAT
TACCGTCCTTGAGGCGCGGAGTCAATGTGTTAAACAGCTGCTTCACGCAC
TCACCCAGCTGATCCTCTTCAGTCGAGCATTTTGGCAAATCAGCAAAGTA
GTTTTTATCCGTGGGAGCTGCACTGCATCCCAAGGCCAGCAGGCTGAGCA
ATCCAATAGTACAATACTTGTCGACTGAAAACT
BS14954.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5945-PA | 753 | CG5945-RA | 3..753 | 767..17 | 3755 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:27:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5945-RB | 1079 | CG5945-RB | 211..961 | 767..17 | 3755 | 100 | Minus |
CG5945-RA | 903 | CG5945-RA | 81..831 | 767..17 | 3755 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:27:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13240335..13240710 | 691..316 | 1880 | 100 | Minus |
2L | 23513712 | 2L | 13241503..13241655 | 169..17 | 765 | 100 | Minus |
2L | 23513712 | 2L | 13240763..13240909 | 315..169 | 735 | 100 | Minus |
2L | 23513712 | 2L | 13240199..13240275 | 767..691 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-05 02:27:11 has no hits.
BS14954.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:20 Download gff for
BS14954.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5945-PA | 1..753 | 17..768 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:12:13 Download gff for
BS14954.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5945-RA | 73..833 | 12..776 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:05:58 Download gff for
BS14954.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5945-RA | 73..833 | 12..776 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:05:58 Download gff for
BS14954.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13240191..13240275 | 691..776 | 96 | -> | Minus |
2L | 13240336..13240710 | 316..690 | 100 | -> | Minus |
2L | 13240763..13240909 | 169..315 | 100 | -> | Minus |
2L | 13241504..13241657 | 12..168 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:12:13 Download gff for
BS14954.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13240191..13240275 | 691..776 | 96 | -> | Minus |
arm_2L | 13240336..13240710 | 316..690 | 100 | -> | Minus |
arm_2L | 13240763..13240909 | 169..315 | 100 | -> | Minus |
arm_2L | 13241504..13241657 | 12..168 | 98 | | Minus |
BS14954.5prime Sequence
783 bp (716 high quality bases) assembled on 2006-10-13
> BS14954.5prime
GAAGTTATCAGTCGACATGTATTGTACTATTGGATTGCTCAGCCTGCTGG
CCTTGGGATGCAGTGCAGCTCCCACGGATAAAAACTACTTTGCTGATTTG
CCAAAATGCTCGACTGAAGAGGATCAGCTGGGTGAGTGCGTGAAGCAGCT
GTTTAACACATTGACTCCGCGCCTCAAGGACGGTAATCCAGAGTTGAGAA
TCGAGCCCTACGAACCTTTGCACCTCAACCGAACCAGCTTCCAATACTCT
AGTGGCACTGTCAATGGTCGCATCACCGTTCGCAATGCCAAGATTTATGG
CTTCTCCTCCAATCGGGCCAAAGAGGTGTCCGTCAAACTCAATGGCGACA
AGGTGAAACTCCGTCTGGTCACCCAAATGCCCAAGTTGAACATTGTGGGC
AGCTATAAGGCCGACATGCAGGTGAATCAGCTGCAACTGAAGCCCAAGGG
TGAATTCAACGTAACGCTCTTGGATGTGGAGGCCATAACGGTGACCGATG
GTGAGGTCTACGAGAAGGATGGTCATCGGTTTTTCCGCCTCAAGAATATC
GACTCAAAGCCAAAGATCAAGGACTTGGTTATCAAGGCAAACGGAATATT
TGCAGATCCTGAACTGGATAAAATCGCTCTGAATGTGGCTAATCAGTATT
GGCGCGATATTTACGGAATAATGTTGCCTGAGACTCGACAGTTTTGGCAA
CCCCTTATGTTGCGAATGTTCAACGAGGCATTCGAACTAGTTCCCATCGA
CCAGTTTCTCAAGGAGTAAAAACTTTCTAGACC
BS14954.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5945-PA | 753 | CG5945-RA | 1..752 | 17..768 | 3760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:34:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5945-RB | 1079 | CG5945-RB | 209..960 | 17..768 | 3760 | 100 | Plus |
CG5945-RA | 903 | CG5945-RA | 79..830 | 17..768 | 3760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:33:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13240335..13240710 | 95..470 | 1880 | 100 | Plus |
2L | 23513712 | 2L | 13241503..13241654 | 617..768 | 760 | 100 | Plus |
2L | 23513712 | 2L | 13240763..13240909 | 471..617 | 735 | 100 | Plus |
2L | 23513712 | 2L | 13240197..13240275 | 17..95 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:33:58 has no hits.
BS14954.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:20 Download gff for
BS14954.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5945-PA | 1..753 | 17..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:54:47 Download gff for
BS14954.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5945-RA | 68..833 | 5..774 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:51 Download gff for
BS14954.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5945-RA | 68..833 | 5..774 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:51 Download gff for
BS14954.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13240186..13240275 | 5..95 | 95 | -> | Plus |
2L | 13240336..13240710 | 96..470 | 100 | -> | Plus |
2L | 13240763..13240909 | 471..617 | 100 | -> | Plus |
2L | 13241504..13241657 | 618..774 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:54:47 Download gff for
BS14954.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13240186..13240275 | 5..95 | 95 | -> | Plus |
arm_2L | 13240336..13240710 | 96..470 | 100 | -> | Plus |
arm_2L | 13240763..13240909 | 471..617 | 100 | -> | Plus |
arm_2L | 13241504..13241657 | 618..774 | 97 | | Plus |
BS14954.pep Sequence
Translation from 16 to 768
> BS14954.pep
MYCTIGLLSLLALGCSAAPTDKNYFADLPKCSTEEDQLGECVKQLFNTLT
PRLKDGNPELRIEPYEPLHLNRTSFQYSSGTVNGRITVRNAKIYGFSSNR
AKEVSVKLNGDKVKLRLVTQMPKLNIVGSYKADMQVNQLQLKPKGEFNVT
LLDVEAITVTDGEVYEKDGHRFFRLKNIDSKPKIKDLVIKANGIFADPEL
DKIALNVANQYWRDIYGIMLPETRQFWQPLMLRMFNEAFELVPIDQFLKE
*
BS14954.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:58:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5945-PB | 250 | CG5945-PB | 1..250 | 1..250 | 1301 | 100 | Plus |
CG5945-PA | 250 | CG5945-PA | 1..250 | 1..250 | 1301 | 100 | Plus |
CG5867-PA | 262 | CG5867-PA | 38..259 | 27..248 | 506 | 39.6 | Plus |
CG16820-PA | 309 | CG16820-PA | 84..307 | 27..248 | 351 | 30.8 | Plus |
CG10407-PB | 259 | CG10407-PB | 38..222 | 28..213 | 199 | 27.3 | Plus |