Clone BS14954 Report

Search the DGRC for BS14954

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:149
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG5945-RA
Protein status:BS14954.pep: full length peptide match
Sequenced Size:785

Clone Sequence Records

BS14954.complete Sequence

785 bp assembled on 2010-02-09

GenBank Submission: KX801315

> BS14954.complete
GAAGTTATCAGTCGACATGTATTGTACTATTGGATTGCTCAGCCTGCTGG
CCTTGGGATGCAGTGCAGCTCCCACGGATAAAAACTACTTTGCTGATTTG
CCAAAATGCTCGACTGAAGAGGATCAGCTGGGTGAGTGCGTGAAGCAGCT
GTTTAACACATTGACTCCGCGCCTCAAGGACGGTAATCCAGAGTTGAGAA
TCGAGCCCTACGAACCTTTGCACCTCAACCGAACCAGCTTCCAATACTCT
AGTGGCACTGTCAATGGTCGCATCACCGTTCGCAATGCCAAGATTTATGG
CTTCTCCTCCAATCGGGCCAAAGAGGTGTCCGTCAAACTCAATGGCGACA
AGGTGAAACTCCGTCTGGTCACCCAAATGCCCAAGTTGAACATTGTGGGC
AGCTATAAGGCCGACATGCAGGTGAATCAGCTGCAACTGAAGCCCAAGGG
TGAATTCAACGTAACGCTCTTGGATGTGGAGGCCATAACGGTGACCGATG
GTGAGGTCTACGAGAAGGATGGTCATCGGTTTTTCCGCCTCAAGAATATC
GACTCAAAGCCAAAGATCAAGGACTTGGTTATCAAGGCAAACGGAATATT
TGCAGATCCTGAACTGGATAAAATCGCTCTGAATGTGGCTAATCAGTATT
GGCGCGATATTTACGGAATAATGTTGCCTGAGACTCGACAGTTTTGGCAA
CCCCTTATGTTGCGAATGTTCAACGAGGCATTCGAACTAGTTCCCATCGA
CCAGTTTCTCAAGGAGTAGAAGCTTTCTAGACCAT

BS14954.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5945-RB 753 CG5945-PB 1..753 17..769 3765 100 Plus
CG5945-RA 753 CG5945-PA 1..753 17..769 3765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5945-RB 1079 CG5945-RB 209..961 17..769 3765 100 Plus
CG5945-RA 903 CG5945-RA 79..831 17..769 3765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13240335..13240710 95..470 1880 100 Plus
2L 23513712 2L 13241503..13241655 617..769 765 100 Plus
2L 23513712 2L 13240763..13240909 471..617 735 100 Plus
2L 23513712 2L 13240197..13240275 17..95 395 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:51:00 has no hits.

BS14954.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:46 Download gff for BS14954.complete
Subject Subject Range Query Range Percent Splice Strand
CG5945-RA 1..753 17..769 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:23 Download gff for BS14954.complete
Subject Subject Range Query Range Percent Splice Strand
CG5945-RA 65..817 17..769 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:05 Download gff for BS14954.complete
Subject Subject Range Query Range Percent Splice Strand
CG5945-RA 79..831 17..769 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:30:25 Download gff for BS14954.complete
Subject Subject Range Query Range Percent Splice Strand
CG5945-RA 65..817 17..769 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:25 Download gff for BS14954.complete
Subject Subject Range Query Range Percent Splice Strand
CG5945-RA 79..831 17..769 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:32:25 Download gff for BS14954.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13240197..13240275 17..95 100 -> Plus
2L 13240336..13240710 96..470 100 -> Plus
2L 13240763..13240909 471..617 100 -> Plus
2L 13241504..13241655 618..769 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:05 Download gff for BS14954.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13241504..13241655 618..769 100   Plus
arm_2L 13240197..13240275 17..95 100 -> Plus
arm_2L 13240336..13240710 96..470 100 -> Plus
arm_2L 13240763..13240909 471..617 100 -> Plus

BS14954.3prime Sequence

783 bp (726 high quality bases) assembled on 2006-10-13

> BS14954.3prime
ATGGTCTAGAAAGCTTCTACTCCTTGAGAAACTGGTCGATGGGAACTAGT
TCGAATGCCTCGTTGAACATTCGCAACATAAGGGGTTGCCAAAACTGTCG
AGTCTCAGGCAACATTATTCCGTAAATATCGCGCCAATACTGATTAGCCA
CATTCAGAGCGATTTTATCCAGTTCAGGATCTGCAAATATTCCGTTTGCC
TTGATAACCAAGTCCTTGATCTTTGGCTTTGAGTCGATATTCTTGAGGCG
GAAAAACCGATGACCATCCTTCTCGTAGACCTCACCATCGGTCACCGTTA
TGGCCTCCACATCCAAGAGCGTTACGTTGAATTCACCCTTGGGCTTCAGT
TGCAGCTGATTCACCTGCATGTCGGCCTTATAGCTGCCCACAATGTTCAA
CTTGGGCATTTGGGTGACCAGACGGAGTTTCACCTTGTCGCCATTGAGTT
TGACGGACACCTCTTTGGCCCGATTGGAGGAGAAGCCATAAATCTTGGCA
TTGCGAACGGTGATGCGACCATTGACAGTGCCACTAGAGTATTGGAAGCT
GGTTCGGTTGAGGTGCAAAGGTTCGTAGGGCTCGATTCTCAACTCTGGAT
TACCGTCCTTGAGGCGCGGAGTCAATGTGTTAAACAGCTGCTTCACGCAC
TCACCCAGCTGATCCTCTTCAGTCGAGCATTTTGGCAAATCAGCAAAGTA
GTTTTTATCCGTGGGAGCTGCACTGCATCCCAAGGCCAGCAGGCTGAGCA
ATCCAATAGTACAATACTTGTCGACTGAAAACT

BS14954.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5945-PA 753 CG5945-RA 3..753 767..17 3755 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:27:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5945-RB 1079 CG5945-RB 211..961 767..17 3755 100 Minus
CG5945-RA 903 CG5945-RA 81..831 767..17 3755 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13240335..13240710 691..316 1880 100 Minus
2L 23513712 2L 13241503..13241655 169..17 765 100 Minus
2L 23513712 2L 13240763..13240909 315..169 735 100 Minus
2L 23513712 2L 13240199..13240275 767..691 385 100 Minus
Blast to na_te.dros performed on 2015-02-05 02:27:11 has no hits.

BS14954.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:20 Download gff for BS14954.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5945-PA 1..753 17..768 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:12:13 Download gff for BS14954.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5945-RA 73..833 12..776 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:05:58 Download gff for BS14954.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5945-RA 73..833 12..776 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:05:58 Download gff for BS14954.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13240191..13240275 691..776 96 -> Minus
2L 13240336..13240710 316..690 100 -> Minus
2L 13240763..13240909 169..315 100 -> Minus
2L 13241504..13241657 12..168 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:12:13 Download gff for BS14954.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13240191..13240275 691..776 96 -> Minus
arm_2L 13240336..13240710 316..690 100 -> Minus
arm_2L 13240763..13240909 169..315 100 -> Minus
arm_2L 13241504..13241657 12..168 98   Minus

BS14954.5prime Sequence

783 bp (716 high quality bases) assembled on 2006-10-13

> BS14954.5prime
GAAGTTATCAGTCGACATGTATTGTACTATTGGATTGCTCAGCCTGCTGG
CCTTGGGATGCAGTGCAGCTCCCACGGATAAAAACTACTTTGCTGATTTG
CCAAAATGCTCGACTGAAGAGGATCAGCTGGGTGAGTGCGTGAAGCAGCT
GTTTAACACATTGACTCCGCGCCTCAAGGACGGTAATCCAGAGTTGAGAA
TCGAGCCCTACGAACCTTTGCACCTCAACCGAACCAGCTTCCAATACTCT
AGTGGCACTGTCAATGGTCGCATCACCGTTCGCAATGCCAAGATTTATGG
CTTCTCCTCCAATCGGGCCAAAGAGGTGTCCGTCAAACTCAATGGCGACA
AGGTGAAACTCCGTCTGGTCACCCAAATGCCCAAGTTGAACATTGTGGGC
AGCTATAAGGCCGACATGCAGGTGAATCAGCTGCAACTGAAGCCCAAGGG
TGAATTCAACGTAACGCTCTTGGATGTGGAGGCCATAACGGTGACCGATG
GTGAGGTCTACGAGAAGGATGGTCATCGGTTTTTCCGCCTCAAGAATATC
GACTCAAAGCCAAAGATCAAGGACTTGGTTATCAAGGCAAACGGAATATT
TGCAGATCCTGAACTGGATAAAATCGCTCTGAATGTGGCTAATCAGTATT
GGCGCGATATTTACGGAATAATGTTGCCTGAGACTCGACAGTTTTGGCAA
CCCCTTATGTTGCGAATGTTCAACGAGGCATTCGAACTAGTTCCCATCGA
CCAGTTTCTCAAGGAGTAAAAACTTTCTAGACC

BS14954.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5945-PA 753 CG5945-RA 1..752 17..768 3760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5945-RB 1079 CG5945-RB 209..960 17..768 3760 100 Plus
CG5945-RA 903 CG5945-RA 79..830 17..768 3760 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13240335..13240710 95..470 1880 100 Plus
2L 23513712 2L 13241503..13241654 617..768 760 100 Plus
2L 23513712 2L 13240763..13240909 471..617 735 100 Plus
2L 23513712 2L 13240197..13240275 17..95 395 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:33:58 has no hits.

BS14954.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:20 Download gff for BS14954.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5945-PA 1..753 17..769 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:54:47 Download gff for BS14954.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5945-RA 68..833 5..774 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:51 Download gff for BS14954.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5945-RA 68..833 5..774 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:51 Download gff for BS14954.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13240186..13240275 5..95 95 -> Plus
2L 13240336..13240710 96..470 100 -> Plus
2L 13240763..13240909 471..617 100 -> Plus
2L 13241504..13241657 618..774 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:54:47 Download gff for BS14954.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13240186..13240275 5..95 95 -> Plus
arm_2L 13240336..13240710 96..470 100 -> Plus
arm_2L 13240763..13240909 471..617 100 -> Plus
arm_2L 13241504..13241657 618..774 97   Plus

BS14954.pep Sequence

Translation from 16 to 768

> BS14954.pep
MYCTIGLLSLLALGCSAAPTDKNYFADLPKCSTEEDQLGECVKQLFNTLT
PRLKDGNPELRIEPYEPLHLNRTSFQYSSGTVNGRITVRNAKIYGFSSNR
AKEVSVKLNGDKVKLRLVTQMPKLNIVGSYKADMQVNQLQLKPKGEFNVT
LLDVEAITVTDGEVYEKDGHRFFRLKNIDSKPKIKDLVIKANGIFADPEL
DKIALNVANQYWRDIYGIMLPETRQFWQPLMLRMFNEAFELVPIDQFLKE
*

BS14954.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG5945-PB 250 CG5945-PB 1..250 1..250 1301 100 Plus
CG5945-PA 250 CG5945-PA 1..250 1..250 1301 100 Plus
CG5867-PA 262 CG5867-PA 38..259 27..248 506 39.6 Plus
CG16820-PA 309 CG16820-PA 84..307 27..248 351 30.8 Plus
CG10407-PB 259 CG10407-PB 38..222 28..213 199 27.3 Plus